![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jun 5, 2020:
- 7:03 PM ChangeLog edited by
- (diff)
- 6:50 PM ChangeLog edited by
- (diff)
- 6:26 PM ChangeLog edited by
- (diff)
- 6:14 PM Ticket #3373 (Opening large RNA takes 90 seconds instead of 2 seconds due to ...) created by
- […]
- 6:01 PM Ticket #3105 (addh wrong hydrogen name on glycosylated Asn residues) closed by
- fixed: Fixed in the next daily build. Might put an AddH 1.0.1 bundle on the …
- 5:50 PM Ticket #3372 (Writing mmCIF file takes 35 minutes) created by
- […] sarscov2_rna.cif
- 5:45 PM Ticket #3371 (Make "usage open" report some option info) created by
- […]
- 4:36 PM Ticket #3358 (Remove deprecated chimerax.core.geometry imports) closed by
- fixed: Fixed in ChimeraX 1.1 (not 1.0).
- 4:10 PM Ticket #3359 (map/surface color is None) closed by
- fixed: Fixed. Made volume viewer handle situation where surface is closed. …
- 3:35 PM Ticket #3162 (Incorrect commands easily lost) closed by
- fixed: Failed commands no longer get auto-selected, so it is not easy to …
- 3:07 PM Ticket #3370 (split command ValueError: Tried to add model with incompatible id) closed by
- fixed: Fixed. Split command was adding child models to a new grouping model. …
- 2:58 PM Ticket #3370 (split command ValueError: Tried to add model with incompatible id) created by
- […]
Jun 4, 2020:
- 8:33 PM Ticket #3360 (Ribbon index error) closed by
- duplicate: Fixed 1.5 months ago.
- 8:20 PM Ticket #3369 (Make bug reporter to check if bug already fixed) created by
- Users often report the same fixed bug many times. It would save the …
- 8:05 PM Ticket #3368 (API needed for saving non-State classes) created by
- Currently geometry.Place and graphics.Drawing, graphics.View, ... do …
- 7:56 PM Ticket #3364 (Surface dust restored from session not saved in session) closed by
- fixed: Fixed. There were two bugs. When a session with hide dust was …
- 7:07 PM Ticket #3367 (Save position matrices for subtomogram boxes) created by
- Would like to be able to write out the position matrices for …
- 7:01 PM Ticket #3366 (Report color by height settings) created by
- Want a command to report current color by height settings, useful when …
- 6:59 PM Ticket #3365 (Report surface dust settings) created by
- Would like a command to report the current surface dust settings, …
- 6:57 PM Ticket #3364 (Surface dust restored from session not saved in session) created by
- […]
- 6:47 PM Ticket #3363 (Visually distinguish old log output from new) created by
- […]
- 6:42 PM Ticket #3362 (Run command from VR wand button press) created by
- Would like to be able to click a VR button to run a command such as …
- 6:31 PM Ticket #3361 (Clip in VR further from face) created by
- When moving around inside tomograms with surface display it would help …
- 5:56 PM Ticket #3360 (Ribbon index error) created by
- […]
- 5:10 PM Ticket #3359 (map/surface color is None) created by
- […]
- 5:01 PM Ticket #3358 (Remove deprecated chimerax.core.geometry imports) created by
- After geometry was moved out of core, temporary code was put in …
- 4:01 PM Ticket #3356 (Test clean startup with updated bundle) closed by
- fixed: A fake 1.1 version of the Help bundle is on the preview website. …
- 3:49 PM Ticket #3352 (Disable toolshed bundle update notification mechanism) closed by
- fixed
- 1:45 PM Ticket #3357 (Add installed version numbers to the bug reporter) created by
- 1:40 PM Ticket #3356 (Test clean startup with updated bundle) created by
- Greg will put a new version of help viewer on preview site
- 1:37 PM Ticket #3355 (Open ticket with UCSF IT to open up pre-release toolshed to outside ...) created by
- 1:37 PM Milestone 1.0 completed
- == Overview * Useful subset of Chimera features * Focus on …
- 1:35 PM Ticket #3354 (Test update of bundles with binary (e.g. C++) components) created by
- Atomic is a good example
- 1:34 PM Ticket #3353 (Flatten bundle hierarchy) created by
- Atomic and Volume are good examples of this.
- 1:32 PM Ticket #3352 (Disable toolshed bundle update notification mechanism) created by
- 9:44 AM Ticket #3351 (ribbon pick: index is out of bounds for axis) closed by
- duplicate: Fixed a month and a half ago.
- 12:16 AM Ticket #3351 (ribbon pick: index is out of bounds for axis) created by
- […]
Jun 3, 2020:
- 5:41 PM Ticket #3348 (Filled rings unusably slow on large structures) reopened by
- 5:32 PM Ticket #3327 (mmCIF output problem for inserted residues) closed by
- fixed: Okay, fixed AFAICT. My test case with a peptide stitched into a …
- 4:40 PM Ticket #3233 (Remove bogus 1-star reviews) closed by
- fixed: No response from Tempy contact. Went ahead and deleted the ratings …
- 4:36 PM Ticket #3348 (Filled rings unusably slow on large structures) closed by
- fixed: Adding a add_shapes API, to add multiple shapes at one time, changed …
- 12:33 PM Ticket #3350 (Better information for bundle requirement problems) created by
- […]
- 8:56 AM Ticket #3349 (Problem handling bad template) closed by
- fixed: While this particular error has been fixed for a while, I'd like to …
- 12:43 AM Ticket #3349 (Problem handling bad template) created by
- […]
Jun 2, 2020:
- 4:29 PM Ticket #3348 (Filled rings unusably slow on large structures) created by
- […]
- 12:17 PM Ticket #3347 (Session saving creating arbitrary class instances) closed by
- fixed: isinstance is used throughout the session saving and serialization …
- 10:19 AM Ticket #3346 (config file is all nulls) closed by
- can't reproduce: Not sure why this happened. But you recover by deleting …
- 8:18 AM Ticket #3347 (Session saving creating arbitrary class instances) created by
- […]
- 2:50 AM Ticket #3346 (config file is all nulls) created by
- […]
Jun 1, 2020:
- 6:24 PM Ticket #2567 (Command History window shown when it shouldn't be) closed by
- fixed: I *believe* I fixed this on 2/21/2020 with commit …
- 3:42 PM Ticket #3345 (Model closed twice) closed by
- fixed: Fixed. Code change a few hours ago that made Models.remove() not …
- 3:26 PM Ticket #3345 (Model closed twice) created by
- […]
- 11:36 AM Ticket #3339 (Easy to get surface cap deletion wrong) closed by
- fixed: Ok, I changed Models.remove() so it does not disassemble the tree of …
- 10:46 AM Ticket #3340 (Permission denied saving image to C:\Users\Public\Desktop) closed by
- not a bug: The save snapshot button tries to save the image file on the desktop. …
- 9:56 AM Ticket #3344 (Opening structure-factor cif) closed by
- not a bug: No, you've got that backwards, given a format/suffix the open command …
- 9:52 AM Ticket #3343 (OpenMM: gbforce.addParticles: AttributeError) closed by
- fixed: Long since fixed - the user has an old, mid-development build of …
- 9:28 AM Ticket #3344 (Opening structure-factor cif) created by
- […]
May 31, 2020:
May 30, 2020:
- 1:04 PM Ticket #3342 (Segger: crash selecting segments) created by
- […]
- 4:27 AM Ticket #3341 (Memory error in libqsvg.so on exit) created by
- I've been seeing occasional segmentation faults (maybe 1 time in 20) …
- 4:12 AM Ticket #3340 (Permission denied saving image to C:\Users\Public\Desktop) created by
- […]
- 3:03 AM Ticket #3339 (Easy to get surface cap deletion wrong) created by
- […]
May 29, 2020:
- 11:43 PM Ticket #3295 (Help Viewer back-button bug) closed by
- fixed: Not updating the status of the back and forward buttons also happened …
- 11:41 PM Ticket #3317 (CCD fetch failures need to be cached) closed by
- fixed: Also reduce the warnings due to a missing CCD entry to one line …
- 10:32 AM Ticket #3337 (Error assigning non-contiguous array to atom.bfactors) closed by
- fixed: Fixed in ChimeraX 1.1. Assigning a molecular collection attribute …
- 9:58 AM Ticket #3336 (Many graphics errors) closed by
- nonchimerax: Your graphics driver is defective and ChimeraX does not support Windows 7.
- 9:52 AM Ticket #3338 (Phenix mmCIF problems) created by
- We should work with the Phenix group to get them to output conforming …
- 8:14 AM Ticket #3337 (Error assigning non-contiguous array to atom.bfactors) created by
- […]
May 28, 2020:
- 9:48 PM Ticket #3336 (Many graphics errors) created by
- […]
- 6:06 PM Ticket #3334 (20.04 install fail) closed by
- fixed: Thank you for reporting this. It will be fixed in the next release …
- 2:20 PM Ticket #3333 (Probable HTML crash (help viewer?)) closed by
- can't reproduce: I thought Greg/Conrad did do something about that. Created a Schema …
- 2:18 PM Ticket #3333 (Probable HTML crash (help viewer?)) reopened by
- 2:01 PM Ticket #3330 (Sequence window unreadable in Dark Mode) closed by
- fixed: Hi Loc, Thanks for reporting this problem. I have fixed it and the …
- 1:56 PM Ticket #3335 (open command: UnboundLocalError: local variable 'data_format' ...) closed by
- duplicate: Fixed on 4/30
- 1:28 PM Ticket #3333 (Probable HTML crash (help viewer?)) closed by
- can't reproduce
- 11:29 AM Ticket #3335 (open command: UnboundLocalError: local variable 'data_format' ...) created by
- […]
- 10:43 AM Ticket #3319 (cartoon style modeHelix wrap: 'NoneType' object does not support item ...) closed by
- fixed: Fixed in ChimeraX 1.1. Cartoon helix mode wrap assumed guide atoms (O …
- 10:27 AM Ticket #3334 (20.04 install fail) created by
- […] 20200528_Chimerax_ubuntu_20_04_install_fail_log
- 9:55 AM Ticket #3333 (Probable HTML crash (help viewer?)) created by
- […]
- 9:51 AM Ticket #3332 (Get sample code from relevant branch) created by
- Original mail: The CGI script that generates the sample-code zip file …
- 1:23 AM Ticket #3331 (Installation error) created by
- […] chimerax_error2.png [attachment:"Screenshot …
May 27, 2020:
- 11:58 PM Ticket #3330 (Sequence window unreadable in Dark Mode) created by
- […] Screen Shot 2020-05-28 at 2.55.31 AM.png
- 10:47 PM Ticket #3318 (Shape command allows creating submodel without a parent model) closed by
- fixed: Fixed in ChimeraX 1.1 Rewrote Models.add() and added extensive error …
- 10:46 PM Ticket #3324 (Wrong parent model assigned when shape command modelId given) closed by
- fixed: Fixed in ChimeraX 1.1 Rewrote Models.add() and added extensive error …
- 5:16 PM Ticket #3329 (Changing 2D label model id can cause problems) created by
- […]
- 4:32 PM Ticket #3328 (Make Surface model show clip caps by default) created by
- I think it would be good to have models that are instances of the …
- 3:35 PM Ticket #3279 (Prevent bad model hierarchies from being formed) closed by
- duplicate
- 2:45 PM Ticket #2876 (core import hook makes non-equivalent classes) closed by
- fixed
- 2:14 PM Ticket #3160 (Install updated bundle into 1.0) closed by
- fixed: Verified that an updated standard bundle will install into the …
- 11:28 AM Ticket #3322 (Blast Protein has trouble with sequences that include UNK) closed by
- fixed: Fixed in 2ddcddb1e. Use 'X' instead of '?' for unknown …
- 10:40 AM Ticket #3326 ('rename' command: maximum recursion depth exceeded) closed by
- fixed: Fixed. The rename command didn't handle the case where a model id …
- 9:46 AM Ticket #3315 (Lighting dark in stereo mode) closed by
- duplicate: This is very likely the same problem as #3226 that everything inside …
- 9:16 AM Ticket #3320 (No bug reported) closed by
- not a bug
- 5:01 AM Ticket #3327 (mmCIF output problem for inserted residues) created by
- […] building_bug.cxs
- 3:00 AM Ticket #3326 ('rename' command: maximum recursion depth exceeded) created by
- […]
May 26, 2020:
- 8:40 PM Ticket #3325 (Crash when clicking on logged "silhouette false" command) created by
- […]
- 6:28 PM Ticket #3324 (Wrong parent model assigned when shape command modelId given) created by
- […]
- 6:20 PM Ticket #3323 (Side View should log a clipping command) created by
- Side View should log a clip command when the user moves a clip plane. …
- 6:17 PM Ticket #3292 (Circular dependency saving surface ("shape icosahedron"?)) closed by
- fixed: Fixed. Session save of surface geometry was incorrectly trying to …
- 6:14 PM Ticket #3200 (configfile/configparser not handling encoding) closed by
- fixed: No response. Assume it's been fixed.
- 5:37 PM Ticket #3309 (some color commands should only target atomic models) closed by
- wontfix: MarkerSet is a Structure. There is another class called …
- 4:59 PM Ticket #3302 ("tool show" expanding to "toolshed show") closed by
- fixed: Done. Also suppressed "tool" is a prefix of existing command …
- 4:25 PM Ticket #3296 (volume "subregion" keyword inconsistent with documentation) closed by
- wontfix: Named volume regions are a Chimera feature not currently supported in …
- 4:19 PM Ticket #3290 (selected_residues(session) very slow for large models) closed by
- fixed: After looking at the code, I'm not looping in Python. The lesson is …
- 4:03 PM Ticket #3298 (Crash getting global interpreter lock) reopened by
- 3:50 PM Ticket #3294 (Deleted color-blob check box still being used) closed by
- fixed: Fixed. Pick blobs mouse mode used after pick blobs gui panel was …
- 3:34 PM Ticket #3322 (Blast Protein has trouble with sequences that include UNK) created by
- […]
- 2:54 PM Ticket #3321 (remotecontrol subcommands on/off keywords inconsistent) created by
- Currently the REST subcommand takes start/stop and the XMLRPC one …
- 12:58 PM Ticket #3320 (No bug reported) created by
- […]
- 11:34 AM Ticket #3319 (cartoon style modeHelix wrap: 'NoneType' object does not support item ...) created by
- […]
- 11:12 AM Ticket #3318 (Shape command allows creating submodel without a parent model) created by
- […]
- 11:06 AM Ticket #3317 (CCD fetch failures need to be cached) created by
- […] big_membrane_lipids_only.cif
- 11:04 AM Ticket #3314 (Non-functional selectors) closed by
- not a bug: Hi Phil, The basic "name" command takes literally what you typed as …
- 10:29 AM Ticket #3310 (Session restore failure: ValueError: int is not allowed for map key) closed by
- duplicate: Hi Doreen, This bug was fixed the day after the version you are …
- 10:23 AM Ticket #3316 (Test if bug report log contains all commands) closed by
- not a bug: All commands in this test seemed to make it into the bug report log.
- 10:18 AM Ticket #3308 (User-supplied template does not match the residue) closed by
- duplicate
- 10:17 AM Ticket #3316 (Test if bug report log contains all commands) created by
- […]
- 10:13 AM Ticket #3307 (Model panel, list index out of range, restoring session) closed by
- duplicate: Similar to #3279 -- same user, related session.
- 10:10 AM Ticket #3305 (Save dialog failure) closed by
- duplicate: Hi Raoul, This problem was fixed in the build immediately after the …
- 9:54 AM Ticket #3304 (safeguard chain IDs) closed by
- wontfix: Hi Tristan, I do not envision "setattr" as being the command for …
- 9:40 AM Ticket #3315 (Lighting dark in stereo mode) created by
- Begin forwarded message: From: Kenneth Satyshur Subject: …
- 9:39 AM Ticket #3280 (Error saving session in Clipper symmetry, CORE_STATE_VERSION gone) closed by
- fixed: All sorted. Saving and restoring happily again.
- 9:06 AM Ticket #3311 (Installing ISOLDE in old ChimeraX version) closed by
- fixed
- 6:36 AM Ticket #3314 (Non-functional selectors) created by
- […] InducedFit_model1_rec.mae
- 6:09 AM Ticket #3313 ("Vestigial" ViewDockX can interfere with session restore) created by
- […] ViewDocX_bug.cxs
- 5:35 AM Ticket #3312 (Help Viewer crash) created by
- […]
- 3:08 AM Ticket #3311 (Installing ISOLDE in old ChimeraX version) created by
- […]
- 2:38 AM Ticket #3310 (Session restore failure: ValueError: int is not allowed for map key) created by
- […] chimera bug opening csx file.PNG
- 2:06 AM Ticket #3309 (some color commands should only target atomic models) created by
- […]
May 25, 2020:
- 6:13 PM Ticket #3308 (User-supplied template does not match the residue) created by
- […]
- 5:51 PM Ticket #3307 (Model panel, list index out of range, restoring session) created by
- […]
- 5:30 PM Ticket #3306 (ChimeraX startup: unsupported locale setting) created by
- […]
- 4:28 PM Ticket #3305 (Save dialog failure) created by
- […]
- 3:55 PM Ticket #3284 (Unknown command: linux xdg-install system true) closed by
- fixed: Sorry about that. The fixed will be in the next release candidate, …
- 2:49 PM Ticket #3304 (safeguard chain IDs) created by
- […]
- 12:49 PM Ticket #3303 (Weird copy/paste behavior) created by
- […]
- 12:46 PM Ticket #3302 ("tool show" expanding to "toolshed show") created by
- […]
- 9:43 AM Ticket #3299 (unexpected unindent running Volume Viewer) closed by
- duplicate: Was fixed a week ago. Get current ChimeraX.
- 9:43 AM Ticket #3293 (unexpected unindent running Volume Viewer) closed by
- duplicate: Was fixed a week ago. Get current ChimeraX build.
- 9:38 AM Ticket #3301 (Model panel, list index out of range, restoring session) closed by
- duplicate: Similar to #3279 -- same user, related session. Would be nice if …
- 9:30 AM Ticket #3298 (Crash getting global interpreter lock) closed by
- can't reproduce
- 9:12 AM Ticket #3286 (ISOLDE: KeyError in find_glycan_template_name_and_link) closed by
- fixed: Arg! Didn't notice that this was an anonymous report. Sigh. Closing as …
- 9:06 AM Ticket #3291 (Model panel, list index out of range, restoring session) closed by
- duplicate: Exact duplicate of #3279 (same user/session)
- 9:02 AM Ticket #3289 (Model panel, list index out of range, restoring session) closed by
- duplicate: Exact duplicate of #3279 (same user/session)
- 9:00 AM Ticket #3288 (Model panel, list index out of range, restoring session) closed by
- duplicate: Exact duplicate of #3279 (same user/session)
- 8:59 AM Ticket #3287 (Model panel, list index out of range, restoring session) closed by
- duplicate: Exact duplicate of #3279 (same user/session)
- 8:57 AM Ticket #3300 (ISOLDE and reporting error) closed by
- fixed: The new ISOLDE builds (once released) will give more helpful error …
- 8:41 AM Ticket #3301 (Model panel, list index out of range, restoring session) created by
- […]
- 4:47 AM Ticket #3300 (ISOLDE and reporting error) created by
- […]
- 2:04 AM Ticket #3299 (unexpected unindent running Volume Viewer) created by
- […] emd_9333_msk_1.map
May 24, 2020:
- 7:21 PM Ticket #3298 (Crash getting global interpreter lock) created by
- […]
- 4:35 PM Ticket #3297 (Error opening grayscale + alpha 2D image) created by
- […] gray_alpha.tif
- 1:37 AM Ticket #3296 (volume "subregion" keyword inconsistent with documentation) created by
- […]
- 1:27 AM Ticket #3295 (Help Viewer back-button bug) created by
- […]
- 12:51 AM Ticket #3294 (Deleted color-blob check box still being used) created by
- […]
May 23, 2020:
- 11:46 AM Ticket #3293 (unexpected unindent running Volume Viewer) created by
- […]
- 9:38 AM Ticket #3292 (Circular dependency saving surface ("shape icosahedron"?)) created by
- […]
- 5:52 AM Ticket #3291 (Model panel, list index out of range, restoring session) created by
- […]
- 4:14 AM Ticket #3290 (selected_residues(session) very slow for large models) created by
- From #3285. For 3j3y, with all atoms selected: […] The actual …
May 22, 2020:
- 8:48 PM Ticket #3289 (Model panel, list index out of range, restoring session) created by
- […]
- 6:25 PM Ticket #3288 (Model panel, list index out of range, restoring session) created by
- […]
- 6:16 PM Ticket #3275 (Registration server unavailable) closed by
- fixed: The registration script should be able to handle UTF-8 characters now. …
- 6:12 PM Ticket #3287 (Model panel, list index out of range, restoring session) created by
- […]
- 5:00 PM Ticket #1885 (error using BLOSUM100 in blast) closed by
- fixed: Fixed in 7510c8922. The list of supported similarity …
- 3:01 PM Ticket #3286 (ISOLDE: KeyError in find_glycan_template_name_and_link) created by
- […]
- 2:59 PM Ticket #3285 (Slow graphics updates) created by
- […]
- 2:21 PM Ticket #3234 (ISOLDE Tool Shed install button not appearing) closed by
- fixed: Heard from Tristan that this was fixed. If not, please let us know.
- 1:57 PM Ticket #3232 (Tool Shed download problem) closed by
- fixed: The production toolshed has been updated with the new code.
- 1:47 PM Ticket #3281 (Garbled PostiveIntArg error message) closed by
- fixed: Fixed the error message.
- 11:59 AM Ticket #3284 (Unknown command: linux xdg-install system true) created by
- […] 20200522_Chimerax_ubuntu_20_04_install_fail_log
- 11:23 AM Ticket #3283 (Truncated fetched file produces error when fetched again) created by
- […]
- 11:18 AM Ticket #1311 (Windows 10 display scaling gives wrong GUI text sizes) closed by
- fixed: Font sizes currently look reasonable at 100%, 125% and 175% scaling on …
- 11:13 AM Ticket #1134 (VR gui panel does not work hidden on desktop) closed by
- fixed: VR now shows each ChimeraX tool and a separate pane and those panels …
- 10:55 AM Ticket #3251 (Another clEnqueueReadBuffer problem) closed by
- fixed: Great! I'll go ahead and close this then.
- 10:30 AM Ticket #151 (Rendering ribbon with stick is slow) closed by
- can't reproduce: Retried this test on a newer Mac laptop with larger system 4v88, …
- 10:24 AM Ticket #61 (Rendering takes minutes, Mac Nvidia Geforce GT 330M graphics) closed by
- nonchimerax: The computers that have these extremely limited graphics seem rare …
- 10:20 AM Ticket #947 (Image save only includes lower left quadrant, Mac retina display) closed by
- can't reproduce: This was a macOS graphics driver issue. I have not seen it reported …
- 10:18 AM Ticket #1041 (Surprising slowdown when drawing multiple drawings) closed by
- fixed: Seems performance was made adequate with some bounding box optimization.
- 10:12 AM Ticket #2408 (Cannot use Lenobo explorer for VR) closed by
- can't reproduce: No response from user debugging VR setup.
- 10:09 AM Ticket #2536 (Tug mouse mode bad allocation error) closed by
- fixed: ChimeraX now uses the updated OpenMM 7.4.1
- 10:08 AM Ticket #2566 (Can't start ChimeraX) closed by
- can't reproduce: Some kind of OpenGL / graphics driver problem on reporter's computer. …
- 10:06 AM Ticket #2565 (Problems using previously fetched files) closed by
- can't reproduce: Haven't seen this reported again. So I suspect improvements to macOS …
- 9:52 AM Ticket #2961 (Tips for remote use) closed by
- wontfix: In general my recommendation for running ChimeraX remotely is "Don't …
- 9:43 AM Ticket #3037 (Selection problems) closed by
- can't reproduce: Could be that the default framebuffer depth was not 24 as assumed by …
- 9:39 AM Ticket #3222 (During ChimeraX quit: Could not make graphics context current) closed by
- can't reproduce: I added code so that if an OpenGL error occurs when deleting a Drawing …
- 9:36 AM Ticket #3239 (Graphics window banks to gray) closed by
- can't reproduce
- 9:21 AM Ticket #3282 (Add mcopy command) created by
- The mcopy command is useful for replacing a model in a figure and …
- 7:38 AM Ticket #3281 (Garbled PostiveIntArg error message) created by
- […]
- 6:21 AM Ticket #3280 (Error saving session in Clipper symmetry, CORE_STATE_VERSION gone) created by
- […]
May 21, 2020:
- 7:00 PM Ticket #3278 (Bogus capitalization of SimpleXMLRPCServer.__Init__) closed by
- fixed: Fixed. Jeez, I guess I managed to upcase the word with an errant key …
- 6:49 PM Ticket #3279 (Prevent bad model hierarchies from being formed) created by
- […]
- 5:52 PM Ticket #2080 (Awkward text copy from Help Viewer (HTML widgets?)) closed by
- fixed: Was able to move the log window's workaround into the base class, but …
- 5:39 PM Ticket #3278 (Bogus capitalization of SimpleXMLRPCServer.__Init__) created by
- […]
- 4:03 PM Ticket #3277 (Import error running Linux installer) closed by
- fixed: Hi John, Thanks for reporting this problem. It is fixed now and the …
- 3:52 PM Ticket #3274 (Re: [chimerax-users] Recreating views) closed by
- invalid: intended for chimerax-users
- 3:36 PM Ticket #3277 (Import error running Linux installer) created by
- […] 20200521_Chimerax_ubuntu_20_04_install_log
- 2:46 PM Ticket #3270 (Bfactor sharpening on resampled map) closed by
- not a bug: This is not a bug. I attached an image showing that the resampling …
- 2:21 PM Ticket #3257 (unable to reopen data from file history) closed by
- fixed: I wound up change FileHistory as per Tom's suggestion to map the old …
- 12:50 PM Ticket #3276 (nucleotide sugar-tubes disconnected from ribbon in restored session) created by
- open 2bna save nuctest.cxs close open nuctext.cxs .... now …
- 12:28 PM Ticket #3275 (Registration server unavailable) created by
- […]
- 11:24 AM Ticket #3272 (MAV: region name is None) closed by
- fixed: If the setting for showing the selection region was off, then fetching …
- 10:35 AM Ticket #2712 (A lot of array size mismatches after deletions) closed by
- can't reproduce: This does not look like a ribbon error. It was caused by deleting …
- 10:26 AM Ticket #3213 (REST: broken pipe) closed by
- fixed: The fix worked!
- 10:05 AM Ticket #3273 (Missed a "toolshed show" conversion) closed by
- fixed: That was fixed shortly after you downloaded the candidate release. …
- 9:47 AM Ticket #3274 (Re: [chimerax-users] Recreating views) created by
- […]
- 2:30 AM Ticket #3273 (Missed a "toolshed show" conversion) created by
- […]
May 20, 2020:
- 9:38 PM Ticket #3272 (MAV: region name is None) created by
- […]
- 6:27 PM Ticket #3271 (Line-ending issues for resaved PDB files) created by
- […] pdb-export-eol-test-case.zip
- 6:00 PM Ticket #3270 (Bfactor sharpening on resampled map) created by
- […] Screenshot 2020-05-20 20.56.53.png
- 5:04 PM Ticket #3064 (Adding images and descriptions to RBVI bundles) closed by
- fixed: "maestro" is already on the toolshed. "speech" should not see the …
- 4:59 PM Ticket #2917 (BlaST web service: No alias or index file found for protein database) closed by
- fixed: Fixed in b62257089. Instead of catching one specific …
- 4:52 PM Ticket #3014 (Blast Protein tool: threading) reopened by
- This is an RFE not a bug report. Request is to allow entering …
- 4:43 PM Ticket #3014 (Blast Protein tool: threading) closed by
- not a bug: Currently, the Blast Protein tool can only use the sequence from a …
- 4:32 PM Ticket #2373 (Registration failure) closed by
- can't reproduce: Not sure where a self-signed cert would be used when connecting to …
- 4:30 PM Ticket #2993 (KeyError picking ribbon) closed by
- wontfix: Ribbon code has been completely revamped.
- 4:21 PM Ticket #3079 (Registration failure (while plato was down)) closed by
- fixed: Fixed in d60748b6c. Looks like a "Connection refused" …
- 4:03 PM Ticket #3256 (ViewDockX save broken) closed by
- fixed: Fixed in 1baab4c05. Some code got indented too far and …
- 3:29 PM Ticket #3267 (REST https responses garbled) closed by
- not a bug: The server got gobbledygook on input and logged it as such. Not sure …
- 3:25 PM Ticket #3268 (ssl.SSLError starting REST server with 'ssl true') closed by
- fixed: Fixed in 82e20c048. The code works, but uses a …
- 2:54 PM Ticket #2818 (Improve sample bundle code) closed by
- fixed: Hi Tristan, Thanks for this -- it's really excellent and it must have …
- 12:57 PM Ticket #3191 (remove dead I/O code) closed by
- fixed
- 9:50 AM Ticket #3269 (Custom multitouch trackpad bindings) created by
- This has been on the to-do list for a while, and I was recently …
- 9:36 AM Ticket #3268 (ssl.SSLError starting REST server with 'ssl true') created by
- […]
- 9:27 AM Ticket #3267 (REST https responses garbled) created by
- […]
- 8:38 AM Ticket #3262 (Problems both saving and restoring nucleotides) closed by
- duplicate: duplicate of #3263
- 8:03 AM Ticket #3266 (RFE: have matchmaker maintain original SS assignments) created by
- […]
- 7:55 AM Ticket #3264 (glTF save error) closed by
- fixed: Hi Jonathan Thanks for reporting this problem. I have just fixed it …
- 7:53 AM Ticket #3265 (glTF save error) closed by
- fixed: Hi Thibault, Thanks for reporting this problem. I have just fixed it …
- 1:05 AM Ticket #3265 (glTF save error) created by
- […] error_chimeraX.txt
- 12:44 AM Ticket #3264 (glTF save error) created by
- […] adenine.mol
May 19, 2020:
- 7:09 PM Ticket #3252 (DCD "append" not working) closed by
- fixed: Fixed. Reading DCD coordinates with replace false was ignoring the …
- 6:53 PM Ticket #3263 (problems both saving and restoring nucleotides) created by
- […]
- 6:53 PM Ticket #3262 (Problems both saving and restoring nucleotides) created by
- […]
- 6:46 PM Ticket #3261 (Make model-panel coloring issue command) created by
- […]
- 6:19 PM Ticket #3255 (labels for hidden objects not auto-hiding) closed by
- fixed: Fixed. Changed tracking of atom display changed 7 weeks ago (#3000) …
- 6:14 PM Ticket #3253 (3 wishes) closed by
- duplicate: I divided these into separate tickets so that they could be assigned …
- 6:11 PM Ticket #3260 ('clipping' mouse mode should section) created by
- The right mouse mode "clipping", when set to "clip screen planes" in …
- 6:10 PM Ticket #3259 (Saved tool positions not preserving tabbing) created by
- When docked tools are tabbed, saving the tool positions does not save …
- 6:09 PM Ticket #3258 (Clipped molecule only shown partially in Side View) created by
- After clipping symmetrically using the command "clip near -10 far 10 …
- 5:06 PM Ticket #3257 (unable to reopen data from file history) created by
- One of my file history items expanded to: […] and fails with …
- 4:59 PM Ticket #3256 (ViewDockX save broken) created by
- […]
- 4:52 PM Ticket #3255 (labels for hidden objects not auto-hiding) created by
- […]
- 4:45 PM Ticket #3254 (Cannot pick-select ribbon; no atom spec balloons for ribbons) closed by
- fixed: Yikes. Does anyone use ChimeraX? I broke this last Friday and no one …
- 4:13 PM Ticket #3254 (Cannot pick-select ribbon; no atom spec balloons for ribbons) created by
- […]
- 4:06 PM Ticket #3253 (3 wishes) created by
- […] Screenshot 2020-05-19 19.00.48.png
- 2:06 PM Ticket #3252 (DCD "append" not working) created by
- […]
- 11:50 AM Ticket #3250 (Problem updating parameters) closed by
- duplicate: Same bug as #3251. Will continue discussion there.
- 11:19 AM Ticket #3245 (Crash drawing Qt interface) closed by
- can't reproduce: Well, I've got my fingers crossed that the release candidate works …
- 11:02 AM Ticket #3249 (ChimeraX 1.0 rc cannot restore old sessions) closed by
- fixed: Fixed. Will be in the next release candidate.
- 10:17 AM Ticket #3251 (Another clEnqueueReadBuffer problem) created by
- […]
- 10:03 AM Ticket #3250 (Problem updating parameters) created by
- […] ChimeraX-093.jpg
- 9:13 AM Ticket #3246 (Write mmCIF: citation is None) closed by
- duplicate: Duplicate of #3204 that was fixed on May 13th. Please download a …
- 9:11 AM Ticket #3249 (ChimeraX 1.0 rc cannot restore old sessions) created by
- […]
- 8:46 AM Ticket #3248 (Crash drawing Qt interface) closed by
- can't reproduce: We're getting a lot of these.
- 8:45 AM Ticket #3247 (Crash drawing Qt interface) closed by
- can't reproduce
- 8:31 AM Ticket #3248 (Crash drawing Qt interface) created by
- […]
- 8:15 AM Ticket #3247 (Crash drawing Qt interface) created by
- […]
- 7:58 AM Ticket #3246 (Write mmCIF: citation is None) created by
- […]
- 1:40 AM Ticket #3245 (Crash drawing Qt interface) created by
- […]
May 18, 2020:
- 3:36 PM Ticket #3243 (Newly installed file suffixes not recognized) closed by
- fixed: Hi Phil, The 1.6 version of Maestro has now been uploaded to the …
- 1:45 PM Ticket #3244 ("toolshed uninstall" failure) created by
- […]
- 1:05 PM Ticket #3231 (Underscores in atom/residue names) closed by
- fixed: Fixed in a9440a9f9. Allow underscore in atom, residue, …
- 11:34 AM Ticket #3243 (Newly installed file suffixes not recognized) created by
- […]
- 11:34 AM Ticket #3241 (opening omap file gives IndentationError: unexpected unindent) closed by
- duplicate: Greg misindented the volume code but fixed in a few days ago. Should …
- 11:06 AM Ticket #3242 (ctrl-click selects all atoms with same name in a residue) created by
- When a residue has multiple atoms with the same name, ctrl-clicking on …
- 10:55 AM Ticket #3240 ("select add" from menu not working) closed by
- fixed: Okay, the fix will be in the next successful release candidate. …
- 10:37 AM Ticket #3241 (opening omap file gives IndentationError: unexpected unindent) created by
- […] 2fma.omap
- 10:18 AM Ticket #3236 (Crash in graphics driver) closed by
- nonchimerax: Graphics driver bug. "Graphics hardware encountered an error and was …
- 10:14 AM Ticket #3235 (Could not start space navigator) closed by
- duplicate: Fixed a week ago. Get current ChimeraX release candidate.
- 10:06 AM Ticket #3224 (Cartoon pick: index is out of bounds) closed by
- duplicate: Fixed a month ago.
- 10:04 AM Ticket #3223 (glClearColor: invalid enumerant) closed by
- can't reproduce: The error suggests your graphics driver is not capable of running …
- 7:41 AM Ticket #3240 ("select add" from menu not working) created by
- […]
- 7:30 AM Ticket #3239 (Graphics window banks to gray) created by
- […] chimera.png
- 6:36 AM Ticket #3238 (core version requirement) created by
- […]
- 6:28 AM Ticket #3237 (nucleotides disconnected) created by
- […] Screenshot_26546.png
- 1:41 AM Ticket #3236 (Crash in graphics driver) created by
- […]
May 17, 2020:
- 12:38 PM Ticket #3214 (Tube helices broken on Windows, Scipy cannot import _uarray) closed by
- fixed: I agree that the installer asking to restart the computer is annoying. …
- 12:22 PM Ticket #3235 (Could not start space navigator) created by
- […]
- 12:08 PM Ticket #3214 (Tube helices broken on Windows, Scipy cannot import _uarray) reopened by
- I tested the May 16 Windows build and tube helices worked. But …
- 1:50 AM Ticket #3234 (ISOLDE Tool Shed install button not appearing) created by
- Bug report received as email from Wenxin Xi, Chinese Academy of …
- 12:00 AM Ticket #3233 (Remove bogus 1-star reviews) created by
- […]
May 16, 2020:
- 11:58 PM Ticket #3232 (Tool Shed download problem) created by
- […]
- 9:20 PM Ticket #3231 (Underscores in atom/residue names) created by
- […]
- 9:18 PM Ticket #3229 (Atom names with underscores not parsed in commands) closed by
- invalid: I'm going to rereport this with current ChimeraX build since this bug …
- 9:16 PM Ticket #3230 (Checking if bug report includes all logged commands) closed by
- not a bug
- 9:10 PM Ticket #3230 (Checking if bug report includes all logged commands) created by
- […] Screen Shot 2020-05-16 at 9.10.28 PM.png
- 8:55 PM Ticket #3229 (Atom names with underscores not parsed in commands) created by
- […]
- 12:10 PM Ticket #3228 (Preference setting for model id numbers) created by
- Would be helpful if new model numbers were always one larger than …
- 8:35 AM Ticket #3227 (Cannot import _uarray) created by
- […]
- 6:44 AM Ticket #3226 (Make mesh surfaces not cast shadows) created by
- […] soft_lighting_map_issues.tar.gz
- 3:23 AM Ticket #3225 (Failure reading DCD: unexpected end of data) created by
- […]
- 2:14 AM Ticket #3224 (Cartoon pick: index is out of bounds) created by
- […]
- 2:14 AM Ticket #3223 (glClearColor: invalid enumerant) created by
- […]
- 12:31 AM ChangeLog edited by
- (diff)
May 15, 2020:
- 9:07 PM Ticket #3214 (Tube helices broken on Windows, Scipy cannot import _uarray) closed by
- fixed: Windows release candidates will now include the Visual C++ runtime and …
- 2:43 PM Ticket #3220 (Volume viewer broken; registration checking still broken) closed by
- fixed: Fixed. Triple checked previous patch to see if this was systemic or …
- 2:40 PM Ticket #3217 (Saving mmCIF: citation is None) closed by
- duplicate: That is consistent. The bug was happened when a mmCIF model was read …
- 1:21 PM Ticket #3222 (During ChimeraX quit: Could not make graphics context current) created by
- […]
- 10:29 AM Ticket #3219 (Tether atom spec balloon wrong) closed by
- fixed: Fixed. Tethers never had support for showing atomspec balloons, they …
- 8:51 AM Ticket #3215 (Resized Windows text + Ramachandran plato crashes ChimeraX) closed by
- fixed: Wow - believe it or not, you're the second person in a week to figure …
- 8:15 AM Ticket #3221 (Chain mix up using ISOLDE) created by
- […]
- 3:12 AM Ticket #3220 (Volume viewer broken; registration checking still broken) created by
- […]
- 1:58 AM Ticket #3219 (Tether atom spec balloon wrong) created by
- […]
May 14, 2020:
- 11:57 PM Ticket #3218 (Duplicate residues created in Chain) created by
- […] 7bv2_extended.pdb
- 8:20 PM Ticket #3217 (Saving mmCIF: citation is None) created by
- […]
- 5:29 PM Ticket #3216 (open/save need to be aware of uninstalled formats) created by
- Also Info.plist. So toolshed needs to be enhanced to allow access to …
- 3:59 PM Ticket #3194 (remove bare excepts) closed by
- fixed: All of the bare excepts have been replace with "except Exception".
- 12:06 PM Ticket #3215 (Resized Windows text + Ramachandran plato crashes ChimeraX) created by
- […] ChimeraX_Application Errors_CR.evtx
- 10:38 AM Ticket #3211 (Scipy can't import _uarray) closed by
- duplicate: Duplicate of #3214.
- 10:30 AM Ticket #3172 (Space Navigator does not start on Mac) closed by
- fixed: Fixed. Tested today's mac build and space navigator worked.
- 10:23 AM Ticket #3212 (Drawing silhouette: glFramebufferTexture2D: invalid operation) closed by
- can't reproduce: OpenGL InvalidOperation error in glFramebufferTexture2D when drawing …
- 10:07 AM Ticket #3214 (Tube helices broken on Windows, Scipy cannot import _uarray) created by
- […]
- 10:03 AM Ticket #3209 (Graphics hardware error) closed by
- nonchimerax: Crashed in Mac OpenGL graphics driver. Apple OpenGL drivers are prone …
- 9:58 AM Ticket #3208 (Cartoon pick: index is out of bounds) closed by
- duplicate: Was fixed April 21. Reporter is using April 14 build.
- 9:13 AM Ticket #3213 (REST: broken pipe) created by
- On May 14, 2020, at 8:07 AM, Mungo Carstairs (Staff) …
- 8:44 AM Ticket #3206 (wrong version in download) closed by
- wontfix: Was responded to on the chimera-users list
- 7:16 AM Ticket #3212 (Drawing silhouette: glFramebufferTexture2D: invalid operation) created by
- […]
- 5:26 AM Ticket #3211 (Scipy can't import _uarray) created by
- […]
May 13, 2020:
- 10:19 PM Ticket #3210 (develop stragegy for updating JavaScript toolkits embedded in ui module) created by
- The UI module provides several JavaScript toolkits, namely bootgrid …
- 7:15 PM Ticket #3209 (Graphics hardware error) created by
- […]
- 7:08 PM Ticket #3208 (Cartoon pick: index is out of bounds) created by
- […]
- 3:49 PM Ticket #3207 (Re: [chimerax-users] wrong version in download) closed by
- wontfix
- 3:31 PM Ticket #3207 (Re: [chimerax-users] wrong version in download) created by
- […]
- 2:38 PM Ticket #3204 (Save mmCIF: citation is None) closed by
- fixed: Fixed. Thanks for report this.
- 1:18 PM Ticket #3205 (Can't save settings file (in use by another process)) closed by
- fixed: Hi Stephen, This only happened the very first time you started …
- 1:07 PM Ticket #3206 (wrong version in download) created by
- […]
- 1:07 PM Ticket #3159 (Registration traceback) closed by
- fixed: Fixed in [changset:1a20a02de]. Temporarily set locale to en_us when …
- 10:41 AM Ticket #3205 (Can't save settings file (in use by another process)) created by
- […]
- 9:45 AM Ticket #3204 (Save mmCIF: citation is None) created by
- […]
- 9:24 AM Ticket #3203 (Crash creating OpenGL context) closed by
- can't reproduce: No idea how QOpenGLContext::create() can crash. One Qt bug report …
- 9:10 AM Ticket #3202 (CUDA_ERROR_UNKNOWN starting ISOLDE simulation) closed by
- wontfix: Would require further feedback from the user to debug.
- 9:00 AM Ticket #3203 (Crash creating OpenGL context) created by
- […]
- 8:29 AM Ticket #3202 (CUDA_ERROR_UNKNOWN starting ISOLDE simulation) created by
- […]
- 6:25 AM Ticket #3201 (Out of memory error starting ISOLDE simulation) closed by
- wontfix
- 5:34 AM Ticket #3201 (Out of memory error starting ISOLDE simulation) created by
- […]
May 12, 2020:
- 9:27 PM Ticket #3199 (Map segmentation coloring array size mismatch) closed by
- fixed: Fixed. Image style rendering was sometimes using a region size that …
- 6:29 PM Ticket #3200 (configfile/configparser not handling encoding) created by
- […]
- 6:19 PM Ticket #3199 (Map segmentation coloring array size mismatch) created by
- […]
- 6:16 PM Ticket #3198 (Segmentation map coloring in opaque mode gives error) closed by
- fixed: Fixed. Segment colors array was not correctly converted to opaque colors.
- 5:48 PM Ticket #3198 (Segmentation map coloring in opaque mode gives error) created by
- […]
- 4:53 PM Ticket #3197 (command to change chain IDs) created by
- per summary; can leverage work from #2528
- 1:58 PM Ticket #3195 (Open PDB file in already running ChimeraX) closed by
- fixed: Fixed. ChimeraX was getting the Qt FileOpen event but ignored it …
- 11:49 AM Ticket #3193 ("web fetch" format not recognized) closed by
- fixed: Okay, I have quashed this bug, so that file-history entry should work …
- 11:30 AM Ticket #3196 (Add chimerax --send startup option) created by
- Want to be able to open a file in a currently running ChimeraX from a …
- 11:22 AM Ticket #3195 (Open PDB file in already running ChimeraX) created by
- On Mac double clicking a PDB file starts ChimeraX and shows it, but …
- 11:19 AM Ticket #3153 (Mac ChimeraX not registered to open PDB, mmCIF, MRC, ....) reopened by
- 11:08 AM Ticket #3153 (Mac ChimeraX not registered to open PDB, mmCIF, MRC, ....) closed by
- fixed: Confirmed additional data formats are in the distributed application's …
- 11:00 AM Ticket #3194 (remove bare excepts) created by
- All bare excepts, "except:" should be removed from ChimeraX. Instead, …
- 10:42 AM Ticket #3193 ("web fetch" format not recognized) created by
- […] 2020-05-12_chimerax_1_tutorial_fail.pdf
- 10:42 AM Ticket #3192 (Faster decompression of maps in session files) created by
- Maps saved in session files are compressed with gzip. Compression and …
- 10:36 AM Ticket #3189 (Keyboard interrupt during session restore (hang reading volume data?)) closed by
- not a bug: The full exception is in the bug report. A session file was opened, …
- 10:13 AM Ticket #3191 (remove dead I/O code) created by
- At least remove the dead I/O code from the core. It is very confusing …
- 9:50 AM Ticket #3188 (glDrawBuffer: invalid operation) closed by
- can't reproduce: This is the third report by the same user of this error in 5 months on …
- 9:48 AM Ticket #3187 (Can't save settings file (in use by another process)) closed by
- can't reproduce: Hi Steffen, Thanks for getting back to me. This feels like a problem …
- 9:39 AM Ticket #3190 (Bug reporter test) closed by
- fixed: Works.
- 9:37 AM Ticket #3190 (Bug reporter test) created by
- […]
- 9:31 AM Ticket #3189 (Keyboard interrupt during session restore (hang reading volume data?)) created by
- […]
- 8:35 AM Ticket #3186 (Save options widgets deleted) closed by
- duplicate: Hi Thomas, Very sorry for this problem. It was fixed on Friday and is …
- 8:33 AM Ticket #3185 (Crash getting global interpreter lock) closed by
- can't reproduce
- 5:44 AM Ticket #3188 (glDrawBuffer: invalid operation) created by
- […]
- 4:15 AM Ticket #3187 (Can't save settings file (in use by another process)) created by
- […]
May 11, 2020:
- 4:04 PM Ticket #3186 (Save options widgets deleted) created by
- […]
- 3:34 PM Ticket #3185 (Crash getting global interpreter lock) created by
- […]
- 11:50 AM Ticket #3184 (Save options widgets deleted) closed by
- duplicate: Hi Rebecca, Very sorry for this problem. It was fixed on Friday and …
- 11:45 AM Milestone RC 1 completed
- See Milestone 1.0
- 11:44 AM Ticket #3184 (Save options widgets deleted) created by
- […]
- 11:13 AM Ticket #1166 (Ribbon: operands could not be broadcast together with shapes) closed by
- wontfix: No feedback and ribbon code revamped by Tom Goddard.
- 11:12 AM Ticket #622 (Develop protocol for releasing standard bundles onto toolshed) closed by
- not a bug: The consensus is that we will *not* automatically put standard bundles …
- 11:04 AM Ticket #3183 (pb_scene_coord returning None) closed by
- duplicate: This was fixed a month ago. Use ChimeraX daily build.
- 11:04 AM Ticket #922 (Revise tutorials for new data format and bundle APIs) closed by
- fixed: The new open/save APIs were documented before the RC1 release.
- 10:08 AM Ticket #3182 (Crash restoring Structure) closed by
- duplicate: duplicate of #3181
- 10:07 AM Ticket #3181 (Crash restoring Structure) closed by
- can't reproduce: Corrupted session? Unfortunately, would need the session file to make …
- 10:02 AM Ticket #3180 (Save options widgets deleted) closed by
- duplicate: Hi Ulrich, Very sorry for this problem. It was fixed on Friday and is …
- 10:00 AM Ticket #3179 (Crash syncing threads) closed by
- can't reproduce
- 9:57 AM Ticket #3178 (Error with GaudiViewX opening a .zip file) closed by
- nonchimerax
- 9:55 AM Ticket #3177 (Save options widgets deleted) closed by
- duplicate
- 9:54 AM Ticket #3176 (Save options widgets deleted) closed by
- duplicate: Hi Caillan, Actually the problem is that the save dialog only works …
- 9:52 AM Ticket #3175 (Save options widgets deleted) closed by
- duplicate: Hi Cailian, Very sorry for this problem. It was fixed on Friday and …
- 9:49 AM Ticket #3174 (Save options widgets deleted) closed by
- duplicate: Hi Eva, Very sorry for this problem. It was fixed on Friday and is …
- 9:43 AM Ticket #3171 (Save options widgets deleted) closed by
- duplicate: duplicate of #3166
- 9:30 AM Ticket #3170 (Ubuntu 20.04 (Linux) 64-bit download fails) closed by
- fixed: Try again :-) It now works for me.
- 8:18 AM Ticket #2837 (Crash displaying ISOLDE ramachandran plot) closed by
-
fixed: Fixed. Turns out this was being triggered by calling
MatPlotLib's … - 1:37 AM Ticket #3183 (pb_scene_coord returning None) created by
- […]
May 10, 2020:
- 9:31 PM Ticket #3182 (Crash restoring Structure) created by
- […]
- 9:29 PM Ticket #3181 (Crash restoring Structure) created by
- […]
- 11:48 AM Ticket #3180 (Save options widgets deleted) created by
- […]
- 6:52 AM Ticket #3179 (Crash syncing threads) created by
- […]
May 9, 2020:
- 4:52 PM Ticket #3178 (Error with GaudiViewX opening a .zip file) created by
- […]
- 12:03 PM Ticket #3169 (No Report a Bug option for OpenGL error) closed by
- fixed: Fixed. Code was using logger.error() instead of logger.bug() when …
- 10:20 AM Ticket #3177 (Save options widgets deleted) created by
- […]
- 9:55 AM Ticket #3176 (Save options widgets deleted) created by
- […]
- 8:24 AM Ticket #3175 (Save options widgets deleted) created by
- […]
- 5:40 AM Ticket #3174 (Save options widgets deleted) created by
- […]
May 8, 2020:
- 11:25 PM Ticket #2936 (MemoryError saving session) closed by
- fixed: Not sure if this is the same bug, but the msgpack size limits have …
- 11:21 PM Ticket #1918 (Documentation warnings) closed by
- fixed: Changed code to only report "errors" found when building the merged …
- 10:24 PM Ticket #2573 (safe-save permission denied writing temp file) closed by
- can't reproduce
- 10:23 PM Ticket #2700 (Can't open .pyc file) closed by
- fixed: pyc files from different versions of Python are rejected with a …
- 8:54 PM Ticket #2855 (Command to run tests deprecated) closed by
- fixed: Removing testing from bundle builder. Tests are done, separately, …
- 6:37 PM Ticket #3173 (BLAST PDB web services being removed November 2020) created by
- The PDB announced that legacy PDB web services will be discontinued …
- 5:06 PM Ticket #3172 (Space Navigator does not start on Mac) created by
- […]
- 4:47 PM Ticket #2785 (Nucleotides saving deleted Residue) closed by
- duplicate: Duplicate of #2955. And fixed!
- 4:45 PM Ticket #2823 (Nucleotides trying to save dead Residue in session) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 4:39 PM Ticket #3166 (Save options widgets deleted) closed by
- fixed: Can't cache format-specific options because the dialog is destroyed …
- 3:13 PM Ticket #2994 (Nucleotides trying to save closed structure) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 3:12 PM Ticket #2955 (Nucleotides trying to save closed structure) closed by
- fixed: Fixed.
- 3:11 PM Ticket #3123 (self.positions is None) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 3:11 PM Ticket #3164 (Nucleotides trying to save dead structure) closed by
- duplicate: Duplicate of #2955. Finally able to reproduce and fix.
- 1:30 PM Ticket #3171 (Save options widgets deleted) created by
- […]
- 12:52 PM Ticket #3170 (Ubuntu 20.04 (Linux) 64-bit download fails) created by
- […]
- 11:57 AM Ticket #3161 (camera 360sbs: Shader does not have uniform variable "model_view_matrix") closed by
- fixed: Fixed
- 11:29 AM Ticket #3169 (No Report a Bug option for OpenGL error) created by
- […]
- 10:21 AM Ticket #3168 (Support CHARMM/X-PLOR format PDB files) created by
- Like it or not, these are still a favourite with many in the molecular …
- 10:21 AM Ticket #3165 (Problem drawing selection outline: Invalid operation: glBlitFramebuffer) closed by
- duplicate: Fixed several days ago. Selection outline broken by default …
- 10:17 AM Ticket #3167 (Add crystalcontacts command) created by
- From: Guillaume Gaullier Subject: [chimerax-users] How to display …
- 9:09 AM Ticket #3163 (Model panel problem) closed by
- duplicate
- 7:09 AM Ticket #3166 (Save options widgets deleted) created by
- […]
- 5:37 AM Ticket #3165 (Problem drawing selection outline: Invalid operation: glBlitFramebuffer) created by
- […]
- 1:16 AM Ticket #3164 (Nucleotides trying to save dead structure) created by
- […]
May 7, 2020:
- 11:23 PM Ticket #3163 (Model panel problem) created by
- […]
- 8:14 PM Ticket #3157 (License string not "Sphinx compliant") closed by
- fixed: Extra digit in enumeration requires nested paragraph to be indented …
- 6:00 PM Ticket #3162 (Incorrect commands easily lost) created by
- […]
- 5:55 PM Ticket #3161 (camera 360sbs: Shader does not have uniform variable "model_view_matrix") created by
- […]
- 3:29 PM Ticket #3160 (Install updated bundle into 1.0) created by
- Sometime prior to the 1.0 release, we need to verify that an updated …
- 3:27 PM Ticket #3159 (Registration traceback) created by
- At the beginning of #3123 is a traceback in the Registration bundle. …
- 3:20 PM Ticket #3158 (Bogus Linux test failures) created by
- The nightly build reports Linux test failures when there aren't any.
- 1:50 PM Ticket #3145 (File history unreadable) closed by
- can't reproduce: Saw this once before. Not sure how file history JSON file gets …
- 12:38 PM Ticket #1903 (Tabbed toolbar customization) closed by
- fixed: Done, modulo macOS Qt errors rearranging sections.
- 12:36 PM Ticket #1149 (bundles need test suites) closed by
- fixed: Developers need to add their own tests now :-)
- 12:12 PM Ticket #1482 (bundle-ize WebServices + improve docs) closed by
- fixed
- 12:10 PM Ticket #3060 (Adding images and descriptions to RBVI bundles) closed by
- fixed: have apportioned the list to the corresponding programmers
- 11:58 AM Ticket #1173 (Ribbon normalization error) closed by
- fixed: This appears to have been fixed.
- 11:12 AM Ticket #3150 (open/save severely hampered) closed by
- fixed: Okay, I've committed a fix that works in my testing.
- 8:59 AM Ticket #3155 (Model panel problem) closed by
- duplicate
- 8:58 AM Ticket #3154 (Model panel problem) closed by
- can't reproduce: Seen this once before. I *believe* it indicates that a level in the …
- 3:15 AM Ticket #3157 (License string not "Sphinx compliant") created by
- Just a minor formatting issue, by the looks of it. On the license …
- 2:29 AM Ticket #3156 (Error initializing context: clGetPlatformIDs) created by
- […]
May 6, 2020:
- 9:37 PM Ticket #3155 (Model panel problem) created by
- […]
- 9:37 PM Ticket #3154 (Model panel problem) created by
- […]
- 6:32 PM Ticket #3153 (Mac ChimeraX not registered to open PDB, mmCIF, MRC, ....) created by
- […]
- 3:29 PM Ticket #3131 (Read CCD CIFs directly) closed by
- fixed: Error was only happening for fetch-only formats. SMILES suffered from …
- 2:50 PM Ticket #3137 (SeggerX and save dialog need updating) closed by
- fixed: Fixed. Ok, the Segger File / Save... menu now sets the Save dialog …
- 11:02 AM Ticket #3152 (Toolbar icon rollover → crash) created by
- […]
- 9:25 AM Ticket #3148 (pb_scene_coord returning None) closed by
- duplicate: Error showing pseudobonds fixed a month ago. Use a ChimeraX daily …
- 8:46 AM Ticket #3151 (Close session: clipper: 'SymmetryManager' object has no attribute ...) closed by
- fixed: This should be fixed in the latest version (for ChimeraX 0.93). Could …
- 8:24 AM Ticket #3149 (arrays moved to bundle) closed by
- fixed
- 8:19 AM Ticket #3147 (Crash moving window) closed by
- can't reproduce
- 4:35 AM Ticket #3151 (Close session: clipper: 'SymmetryManager' object has no attribute ...) created by
- […] errorWhenSavingSession.rtf
- 4:15 AM Ticket #3150 (open/save severely hampered) created by
- […]
- 1:39 AM Ticket #3149 (arrays moved to bundle) created by
- […]
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