![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Oct 16, 2025: Today
- 8:00 AM Ticket #19170 (ChimeraX bug report submission) created by
- […] clipping_bug_report.zip
- 3:02 AM Ticket #19169 (ChimeraX bug report submission) created by
- […]
- 1:23 AM Ticket #19168 (ChimeraX bug report submission) created by
- […]
Oct 15, 2025: Yesterday
- 5:34 PM Ticket #19164 (Crash using open/save dialog, along with many OpenGL errors) closed by
- can't reproduce
- 5:15 PM Ticket #19167 (just saving and restoring session gives Animation message in Log when ...) created by
- In today's daily build UCSF ChimeraX version: 1.11.dev202510150607 …
- 4:38 PM Ticket #19166 (Make scenes restore surface per-vertex coloring and triangle masking) created by
- Currently per-vertex coloring and triangle masking (surface zones) are …
- 2:53 PM Ticket #19165 (Improving usability of deep mutational scan visualization tools) created by
- Willow and I discussed for an hour today a dozen aspects of how to …
- 2:44 PM Ticket #19164 (Crash using open/save dialog, along with many OpenGL errors) created by
- […]
- 2:42 PM ChangeLog edited by
- (diff)
- 2:08 PM Ticket #19133 (KVFinder crash with large grid spacing / step size) closed by
- fixed: Fixed by limiting grid spacing value to >0 and <5
- 1:54 PM Ticket #19163 (Arrows save in sessions, but not if in scenes) created by
- […]
- 1:22 PM Ticket #19149 (Scene restore is restoring calling each model.restore_scene() many times) closed by
- fixed: That was indeed the issue. I have now exdented that loop.
- 1:16 PM Ticket #19162 (ChimeraX bug report submission) closed by
- not a bug
- 1:16 PM Ticket #19161 (ChimeraX bug report submission) closed by
- not a bug
- 1:15 PM Ticket #19162 (ChimeraX bug report submission) created by
- […]
- 1:14 PM Ticket #19161 (ChimeraX bug report submission) created by
- […]
- 1:13 PM Ticket #19160 (ChimeraX bug report submission) closed by
- not a bug
- 1:13 PM Ticket #19160 (ChimeraX bug report submission) created by
- […]
- 1:12 PM Ticket #19159 (ChimeraX bug report submission) closed by
- not a bug
- 1:11 PM Ticket #19159 (ChimeraX bug report submission) created by
- […]
- 1:11 PM Ticket #19158 (ChimeraX bug report submission) closed by
- not a bug
- 1:10 PM Ticket #19158 (ChimeraX bug report submission) created by
- […]
- 1:09 PM Ticket #19157 (ChimeraX bug report submission) closed by
- not a bug
- 1:08 PM Ticket #19157 (ChimeraX bug report submission) created by
- […]
- 1:03 PM Ticket #19156 (ChimeraX bug report submission) closed by
- not a bug
- 1:03 PM Ticket #19155 (ChimeraX bug report submission) closed by
- not a bug
- 1:02 PM Ticket #19154 (ChimeraX bug report submission) closed by
- not a bug
- 1:01 PM Ticket #19153 (ChimeraX bug report submission) closed by
- not a bug
- 11:56 AM phenix-10-15-25 edited by
- (diff)
- 11:56 AM phenix-10-15-25 edited by
- (diff)
- 11:54 AM phenix-10-15-25 edited by
- (diff)
- 11:54 AM phenix-10-15-25 edited by
- (diff)
- 10:27 AM Ticket #19156 (ChimeraX bug report submission) created by
- […]
- 10:25 AM Ticket #19155 (ChimeraX bug report submission) created by
- […]
- 10:21 AM phenix-10-15-25 edited by
- (diff)
- 10:19 AM Ticket #19154 (ChimeraX bug report submission) created by
- […]
- 10:16 AM phenix-10-15-25 created by
- 10:14 AM Features edited by
- (diff)
- 9:42 AM Ticket #19153 (ChimeraX bug report submission) created by
- […]
- 12:08 AM Ticket #19143 (Make bug report CGI script drop anonymous reports from old ChimeraX ...) closed by
- fixed: Makes sense to me too. I changed the bug report dialog to catch HTTP …
Oct 14, 2025:
- 10:00 PM Ticket #19152 (ChimeraX bug report submission) closed by
- not a bug: more bug reporter dialog testing
- 9:59 PM Ticket #19152 (ChimeraX bug report submission) created by
- […]
- 8:16 PM Ticket #19151 (Various minimize errors) created by
- […]
- 6:56 PM Ticket #19150 (Add scene support for volumes) closed by
- fixed: Done. Zach had added some initial scene support for volumes that …
- 6:48 PM Ticket #19150 (Add scene support for volumes) created by
- Make the scenes command and tool work with volumes.
- 6:45 PM Ticket #19149 (Scene restore is restoring calling each model.restore_scene() many times) created by
- […]
- 6:41 PM Ticket #19148 (ChimeraX bug report submission) closed by
- not a bug: more bug submission debugging
- 6:41 PM Ticket #19148 (ChimeraX bug report submission) created by
- […]
- 6:35 PM Ticket #19147 (ChimeraX bug report submission) closed by
- not a bug: Should have been rejected by bug submission
- 6:34 PM Ticket #19147 (ChimeraX bug report submission) created by
- […]
- 6:29 PM Ticket #19146 (ChimeraX bug report submission) closed by
- not a bug: Darn, this should have been an anonymous bug submission test.
- 6:28 PM Ticket #19145 (ChimeraX bug report submission) closed by
- not a bug: Darn, this should have been an anonymous bug submission test.
- 6:19 PM Ticket #19146 (ChimeraX bug report submission) created by
- […]
- 6:18 PM Ticket #19145 (ChimeraX bug report submission) created by
- […]
- 3:40 PM Ticket #19144 (Make an interactive deep mutation scan trace plot) created by
- I was looking for a way to see an overview of the DMS scores when …
- 3:33 PM Ticket #19142 (Make bug reporter discourage anonymous reports from old chimerax versions) closed by
- fixed: Done. I added the text "Bugs in older ChimeraX versions will not be …
- 2:24 PM Ticket #19141 (Disable Windows and Linux crash reporting) closed by
- fixed: Fixed. Crashes will only be detected using Python faulthandler on Mac.
- 1:04 PM Ticket #19143 (Make bug report CGI script drop anonymous reports from old ChimeraX ...) created by
- To reduce the burden triaging duplicate bug reports we decided …
- 1:02 PM Ticket #19142 (Make bug reporter discourage anonymous reports from old chimerax versions) created by
- Add a sentence to Bug Reporter that says we will not evaluate bug …
- 12:58 PM Ticket #19141 (Disable Windows and Linux crash reporting) created by
- Windows and Linux crash reports have been useless and take time to …
- 12:34 PM Ticket #19140 (Creating zero length arrow reports "Can't find font for arrow".) created by
- […]
- 12:32 PM Ticket #19124 (visible arrow & label become invisible when session restored) closed by
- fixed: Fixed. Labels and arrows had an attribute "visibility" that did not …
- 12:04 PM Ticket #18691 (Preset file contains non-Unicode character) closed by
- fixed: Fix: …
- 11:28 AM Dev2025-10-20 created by
- 11:27 AM 2025-10-16 created by
- 11:27 AM 2025-10-9 edited by
- (diff)
- 11:22 AM DeveloperMeetings edited by
- (diff)
- 11:20 AM Ticket #19136 (Crash in swap_buffers) closed by
- nonchimerax: Graphics driver crash, Windows, Intel(R) HD Graphics 4600, driver …
- 11:13 AM Ticket #19135 (Crash using open/save dialog) closed by
- can't reproduce
- 9:23 AM Ticket #19139 (ChimeraX bug report submission) closed by
- not a bug
- 9:22 AM Ticket #19139 (ChimeraX bug report submission) created by
- […]
- 9:11 AM Ticket #19138 (ChimeraX bug report submission) closed by
- not a bug
- 9:11 AM Ticket #19138 (ChimeraX bug report submission) created by
- […]
- 9:05 AM Ticket #19137 (ChimeraX bug report submission) closed by
- not a bug
- 9:02 AM Ticket #19137 (ChimeraX bug report submission) created by
- […]
- 7:47 AM Ticket #19136 (Crash in swap_buffers) created by
- […]
- 7:13 AM Ticket #19135 (Crash using open/save dialog) created by
- […]
- 6:13 AM Ticket #19134 (SEQCROW: index is out of bounds reading .out file) created by
- […] SAPT.out
- 3:41 AM Ticket #19133 (KVFinder crash with large grid spacing / step size) created by
- […]
- 2:18 AM Ticket #19132 (Model Archive non-chain residue sequence number is '.') created by
- […] …
- 12:44 AM Ticket #19131 (Save mmCIF: not a legal chain id (underscore)) created by
- […]
- 12:05 AM Ticket #19130 (Modeller: 'charmap' codec can't encode character) created by
- […]
Oct 13, 2025:
- 11:12 PM Ticket #19129 (Allow XTC coords to use float32) created by
- […]
- 10:09 PM Ticket #19128 (ChimeraX bug report submission) closed by
- not a bug
- 10:09 PM Ticket #19127 (ChimeraX bug report submission) closed by
- not a bug
- 10:08 PM Ticket #19128 (ChimeraX bug report submission) created by
- […]
- 10:08 PM Ticket #19127 (ChimeraX bug report submission) created by
- […]
- 10:00 PM Ticket #19126 (ChimeraX bug report submission) closed by
- not a bug
- 10:00 PM Ticket #19126 (ChimeraX bug report submission) created by
- […]
- 10:00 PM Ticket #19125 (ChimeraX bug report submission) closed by
- not a bug
- 9:58 PM Ticket #19125 (ChimeraX bug report submission) created by
- […]
- 7:36 PM Ticket #19110 (Make mutationscores associate easier to use when sequences don't match) closed by
- fixed: Done. Made mutationscores structure command able to align to mutation …
- 5:44 PM Ticket #19124 (visible arrow & label become invisible when session restored) created by
- I run a script that fades out my label and arrow. Then in the model …
- 5:21 PM Ticket #19120 (H-Bonds: acc_phi_psi() bad number of arguments) closed by
- not a bug: Bad structure (e.g. "/A DG 4 O4' has bad number of bonds")
- 5:18 PM Ticket #19123 (Crash on Mac waking from sleep) closed by
- duplicate
- 4:24 PM Dev2025-10-13 edited by
- (diff)
- 3:10 PM Ticket #19123 (Crash on Mac waking from sleep) created by
- […]
- 2:43 PM Ticket #19122 (MemoryError reading trajectory) closed by
- limitation: Hi Shahin, Thanks for reporting this problem. ChimeraX ran out of …
- 2:24 PM Ticket #19113 (Crash gathering OpenGL info for bug report) closed by
- can't reproduce: Something is going on with the OpenGL setup. Maybe a bad driver, or …
- 2:12 PM Ticket #19121 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:08 PM Ticket #19119 (Crash using open/save dialog) closed by
- can't reproduce
- 2:06 PM Ticket #19116 (Crash in swap_buffers, macOS 26 status line expose event) closed by
- can't reproduce: macOS 26 crash in OpenGL swap buffers rendering status line on expose …
- 2:06 PM Ticket #19118 (Crash using open/save dialog) closed by
- can't reproduce
- 2:03 PM Ticket #19114 (glTexImage2D failure) closed by
- nonchimerax: OpenGL out of memory error trying to create a 2D texture for drawing …
- 1:59 PM Ticket #19115 ('ArrayGridData' object has no attribute 'dicom_data') closed by
- duplicate
- 1:52 PM Ticket #19112 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:49 PM Ticket #19111 (Crash using open/save dialog) closed by
- can't reproduce
- 1:43 PM Ticket #19108 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 1:41 PM Ticket #19107 (Segmentations: chimerax misspelled in import statement) closed by
- duplicate: Hi Otniel, Thanks for reporting this problem. It is fixed in the …
- 1:39 PM Ticket #19105 (Crash in swap_buffers) closed by
- duplicate: Seems macOS 26 and Qt are not getting along. This status line crash …
- 1:30 PM Ticket #19104 (Crash on Mac waking from sleep) closed by
- duplicate
- 1:29 PM Ticket #19103 (Crash using open/save dialog) closed by
- can't reproduce
- 1:25 PM Ticket #19102 (wrapped C/C++ object of type StatusOpenGLWindow has been deleted) closed by
- can't reproduce: Can't reproduce this no matter how many times I cause the sequence …
- 12:51 PM Ticket #19122 (MemoryError reading trajectory) created by
- […]
- 12:12 PM Ticket #19101 (Crash using open/save dialog) closed by
- can't reproduce
- 11:57 AM Ticket #19098 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:56 AM Ticket #19097 (Crash using open/save dialog) closed by
- can't reproduce
- 11:35 AM Ticket #19094 (Crash in swap_buffers) closed by
- nonchimerax: Expose event of status line results in crash in OpenGL swap buffers in …
- 11:25 AM Ticket #19093 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce: Need the file
- 11:05 AM Ticket #19091 (Crash in event loop) closed by
- can't reproduce: We've gotten several of these.
- 9:43 AM Ticket #19121 (ffmpeg: Permission Denied) created by
- […]
- 9:20 AM Ticket #19120 (H-Bonds: acc_phi_psi() bad number of arguments) created by
- […]
- 8:51 AM Ticket #19119 (Crash using open/save dialog) created by
- […]
- 8:47 AM Ticket #19118 (Crash using open/save dialog) created by
- […]
- 6:56 AM Ticket #19117 (Crash in event loop) created by
- […]
- 6:23 AM Ticket #19116 (Crash in swap_buffers, macOS 26 status line expose event) created by
- […]
Oct 12, 2025:
- 11:22 PM Ticket #19115 ('ArrayGridData' object has no attribute 'dicom_data') created by
- […]
- 8:05 PM Ticket #19114 (glTexImage2D failure) created by
- […]
- 8:03 PM Ticket #19113 (Crash gathering OpenGL info for bug report) created by
- […]
- 7:53 AM Ticket #19112 (Crash on Mac waking from sleep) created by
- […]
- 5:54 AM Ticket #19111 (Crash using open/save dialog) created by
- […]
Oct 11, 2025:
- 10:30 PM Ticket #19110 (Make mutationscores associate easier to use when sequences don't match) created by
- Willow said associating structures with DMS data where the sequences …
- 10:18 PM Ticket #19109 (Add 2D label and arrow GUI) created by
- Add a GUI to place labels and arrows and adjust their settings like …
- 9:01 AM Ticket #19108 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 3:54 AM Ticket #19107 (Segmentations: chimerax misspelled in import statement) created by
- […]
- 1:44 AM Ticket #19106 (GLOzone not found for unknown) created by
- […]
Oct 10, 2025:
- 6:19 PM Ticket #19105 (Crash in swap_buffers) created by
- […]
- 10:30 AM Ticket #19104 (Crash on Mac waking from sleep) created by
- […]
- 10:20 AM Ticket #19103 (Crash using open/save dialog) created by
- […]
- 9:53 AM Ticket #19102 (wrapped C/C++ object of type StatusOpenGLWindow has been deleted) created by
- […]
- 9:30 AM Ticket #19101 (Crash using open/save dialog) created by
- […]
- 8:41 AM Ticket #19100 (UnboundLocalError: cannot access local variable 'dirs' where it is not ...) created by
- […]
- 6:27 AM Ticket #19099 ('Surface' object has no attribute 'data') created by
- […]
- 5:33 AM Ticket #19098 (Crash on Mac waking from sleep) created by
- […]
- 4:41 AM Ticket #19097 (Crash using open/save dialog) created by
- […]
- 2:39 AM Ticket #19096 (SEQCROW: UV/Vis Spectrum: could not convert string to float) created by
- […]
- 2:04 AM Ticket #19095 (Crash in chem_group on Windows) created by
- […]
- 1:35 AM Ticket #19094 (Crash in swap_buffers) created by
- […]
Oct 9, 2025:
- 8:23 PM Ticket #19093 (UnicodeDecodeError reading PDB file) created by
- […]
- 7:05 PM Ticket #19092 (Test of improved Mac crash report formatting.) closed by
- not a bug
- 7:04 PM Ticket #18819 (Improve Mac crash dump formatting of stack trace) closed by
- fixed: I improved the appearance of Mac crash report stack traces so the …
- 6:56 PM Ticket #19092 (Test of improved Mac crash report formatting.) created by
- […]
- 6:30 PM Ticket #19091 (Crash in event loop) created by
- […]
- 4:35 PM windows-signing edited by
- (diff)
- 3:25 PM Ticket #19082 (Sequence search found 1 AlphaFold id that do not have AlphaFold ...) closed by
- fixed: The closest sequence to what you were searching for has UniProt …
- 3:03 PM Ticket #19090 (Place marker on maximum can place marker behind camera) closed by
- fixed: Fixed. The place marker on maximum code was indeed using the entire …
- 2:24 PM Ticket #19089 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:23 PM Ticket #19090 (Place marker on maximum can place marker behind camera) created by
- […]
- 2:20 PM Ticket #19089 (ffmpeg: Permission Denied) created by
- […]
- 2:07 PM Ticket #19087 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:06 PM windows-signing created by
- 2:05 PM Ticket #19080 (Crash in swap_buffers) closed by
- can't reproduce: I suspect this is a Qt Mac multi-display crash. The Log shows the …
- 2:03 PM Ticket #19085 (Crash in garbage collection) closed by
- can't reproduce
- 2:02 PM Ticket #19084 (Crash creating QMenuBar) closed by
- can't reproduce
- 1:59 PM Ticket #19083 (Crash in chem_group on Windows) closed by
- can't reproduce: *Possibly* fixed by #17278
- 1:59 PM Ticket #19079 (glClear: invalid framebuffer operation) closed by
- can't reproduce: A ticket from yesterday showed a crash with expose event for status …
- 1:58 PM Ticket #19088 (ffmpeg: Permission Denied) created by
- […]
- 1:51 PM Ticket #19081 (Crash using open/save dialog) closed by
- can't reproduce
- 1:49 PM Ticket #19087 (ffmpeg: Permission Denied) created by
- […]
- 11:06 AM WikiStart edited by
- (diff)
- 10:14 AM Ticket #19086 (Problem mapping features onto UniProt entry) created by
- […]
- 8:20 AM Ticket #19085 (Crash in garbage collection) created by
- […]
- 7:58 AM Ticket #19084 (Crash creating QMenuBar) created by
- […]
- 7:07 AM Ticket #19083 (Crash in chem_group on Windows) created by
- […]
- 3:47 AM Ticket #19082 (Sequence search found 1 AlphaFold id that do not have AlphaFold ...) created by
- […]
- 3:09 AM Ticket #19081 (Crash using open/save dialog) created by
- […]
- 2:42 AM Ticket #19080 (Crash in swap_buffers) created by
- […]
Oct 8, 2025:
- 9:25 PM Ticket #19079 (glClear: invalid framebuffer operation) created by
- […]
- 7:03 PM Ticket #19073 (Save MRC file: unsupported format character) closed by
- duplicate: This was fixed in July 2024 so in ChimeraX 1.9 and newer.
- 6:49 PM Ticket #19076 (Deep mutational scan histogram scrolling to zoom is wonky) closed by
- fixed: Fixed. Made scrolling mutation score histogram only zoom x axis. …
- 6:41 PM Ticket #19078 (Stacked tools do not show tab buttons Mac Qt 6.9.2) created by
- […]
- 6:33 PM Ticket #19077 (Dragging Altloc tool rapidly up and down over Log and Model Panel crashes) created by
- […]
- 5:31 PM Ticket #19075 (ffmpeg: Permission denied) closed by
- duplicate
- 4:39 PM Ticket #19076 (Deep mutational scan histogram scrolling to zoom is wonky) created by
- […]
- 3:57 PM Ticket #19075 (ffmpeg: Permission denied) created by
- […]
- 12:48 PM Ticket #19074 (SEQCROW causes warning messages at ChimeraX exit) created by
- […]
- 12:46 PM Ticket #19071 (Mac ChimeraX spews "WARNING:" messages to terminal on exit) closed by
- nonchimerax: I'll make a new ticket assigned to Tony Schaefer to track down why …
- 12:13 PM Ticket #19073 (Save MRC file: unsupported format character) created by
- […]
- 11:48 AM Ticket #19072 (H-Bonds: Singular matrix) closed by
- not a bug: Pretty sure it's a problematic structure (e.g. "Combining 37 symmetry …
- 11:40 AM Ticket #19072 (H-Bonds: Singular matrix) created by
- […]
- 11:02 AM Ticket #19071 (Mac ChimeraX spews "WARNING:" messages to terminal on exit) created by
- […]
- 10:50 AM Ticket #19065 (The GPU device instance has been suspended) closed by
- can't reproduce: Online sources say "The GPU device instance has been suspended" means …
- 10:46 AM Ticket #19064 (Unwanted clipping plane) closed by
- can't reproduce: I have never seen the phantom clip planes that you describe. I won't …
- 10:20 AM Ticket #19070 (Crash in garbage collection) closed by
- duplicate
- 10:18 AM Ticket #19070 (Crash in garbage collection) created by
- […]
- 9:51 AM Ticket #19069 (Segmentations: chimerax misspelled in import statement) closed by
- duplicate: Duplicate of #18313
- 9:38 AM Ticket #19068 (ffmpeg: Permission denied) closed by
- duplicate
- 9:33 AM Ticket #19067 (Bad DCD file) closed by
- can't reproduce
- 9:28 AM Ticket #19066 (Crash running modal dialog) closed by
- can't reproduce
- 9:17 AM Ticket #19063 (Closing a previously destroyed window) closed by
- can't reproduce: This "execute three identical commands in a row" behavior seems to …
- 9:08 AM Ticket #19062 (Crash in accessibility routines while showing window) closed by
- can't reproduce
- 9:02 AM Ticket #19061 (Structure::_get_interres_connectivity calling itself while deleting atoms) closed by
- can't reproduce: Not possible. Probably a bad stack trace and a duplicate of #18841
- 8:56 AM Ticket #19069 (Segmentations: chimerax misspelled in import statement) created by
- […]
- 8:53 AM Ticket #19060 (Scipy symbol not found) closed by
- duplicate: Duplicate of #17690
- 8:51 AM ChangeLog edited by
- (diff)
- 8:50 AM ChangeLog edited by
- (diff)
- 7:31 AM Ticket #19068 (ffmpeg: Permission denied) created by
- […]
- 6:31 AM Ticket #19067 (Bad DCD file) created by
- […]
- 5:57 AM Ticket #19066 (Crash running modal dialog) created by
- […]
- 4:13 AM Ticket #19065 (The GPU device instance has been suspended) created by
- […]
- 2:51 AM Ticket #19064 (Unwanted clipping plane) created by
- […]
Oct 7, 2025:
- 10:36 PM Ticket #19063 (Closing a previously destroyed window) created by
- […]
- 10:20 PM Ticket #19062 (Crash in accessibility routines while showing window) created by
- […]
- 2:06 PM Ticket #19061 (Structure::_get_interres_connectivity calling itself while deleting atoms) created by
- […]
- 12:09 PM Ticket #19060 (Scipy symbol not found) created by
- […]
- 11:24 AM DeveloperMeetings edited by
- (diff)
- 11:23 AM 2025-10-9 created by
- 11:22 AM 2025-10-2 edited by
- (diff)
- 11:21 AM Dev2025-10-13 created by
- 11:20 AM DeveloperMeetings edited by
- (diff)
- 10:15 AM Ticket #19054 (Segger: bounding_grid() missing 1 required positional argument: 'cube') closed by
- duplicate: Was fixed in ChimeraX 1.9.
- 10:13 AM Ticket #19052 (glClear: invalid framebuffer operation) closed by
- can't reproduce: Unfortunately the Qt window toolkit on Mac with multiple displays …
- 9:44 AM Ticket #19059 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by
- duplicate: Hi Jing, Thanks for reporting this problem. Find Cavities uses the …
- 9:28 AM Ticket #19056 (KVFinder on old MacOS) closed by
- limitation
- 9:26 AM Ticket #19055 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by
- duplicate: Duplicate of #18630
- 9:24 AM ChangeLog edited by
- (diff)
- 9:17 AM Ticket #19053 (H-Bonds: no bisectors) closed by
- not a bug: Bad structure; don't know how they managed to open it since there is …
- 9:14 AM Ticket #19050 (Cannot write output file to current directory) closed by
- not a bug
- 8:52 AM Ticket #19059 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by
- […]
- 6:56 AM Ticket #19058 (isolde sim start: Residue has multiple bonds to neighbor) created by
- […]
- 6:49 AM Ticket #19057 (Crash creating QWebEngineProfile) created by
- […]
- 5:25 AM Ticket #19056 (KVFinder on old MacOS) created by
- […]
- 4:14 AM Ticket #19055 (Crash closing tool with in-window status bar with PySide 6.9.2) created by
- […]
- 2:31 AM Ticket #19054 (Segger: bounding_grid() missing 1 required positional argument: 'cube') created by
- […]
Oct 6, 2025:
- 9:40 PM Ticket #19053 (H-Bonds: no bisectors) created by
- […]
- 8:46 PM Ticket #19052 (glClear: invalid framebuffer operation) created by
- […]
- 7:30 PM Ticket #19051 (Make Boltz add an mmCIF table that says it is a Boltz prediction) created by
- This will help the PAE error plot tool choose an initial structure …
- 7:28 PM Ticket #19049 (AlphaFold error plot tool does not suggest PAE file) closed by
- fixed: Fixed. The code was only showing the file suggestion if it recognizes …
- 7:19 PM Ticket #19050 (Cannot write output file to current directory) created by
- […]
- 7:11 PM Ticket #19049 (AlphaFold error plot tool does not suggest PAE file) created by
- […]
- 6:57 PM Ticket #19048 (boltz predict protein option treats DNA chains as protein sequences) closed by
- fixed: Fixed. Made boltz predict protein/dna/rna options filter out chains …
- 6:33 PM Ticket #19048 (boltz predict protein option treats DNA chains as protein sequences) created by
- […]
- 5:39 PM Ticket #19047 (alphafold contacts command says no PAE data open when Boltz Error Plot ...) closed by
- fixed: Fixed. The alphafold pae command set the structure.alphafold_pae …
- 5:35 PM Ticket #19047 (alphafold contacts command says no PAE data open when Boltz Error Plot ...) created by
- […]
- 5:34 PM Ticket #8961 (ViewDockX suggestions) closed by
- fixed: Fixed by re-implemented ViewDock
- 3:50 PM Dev2025-10-6 edited by
- (diff)
- 3:02 PM Dev2025-10-6 edited by
- (diff)
- 2:53 PM Ticket #19040 (Web services down) closed by
- fixed: Web services are working again.
- 2:45 PM Ticket #19046 (Crash on Mac waking from sleep) closed by
- duplicate
- 2:43 PM Ticket #19043 ('pip install pyKVFinder' fails with empty error message) closed by
- can't reproduce: Hi Juliana, Thanks for reporting this problem. It's usually been our …
- 2:33 PM Ticket #19046 (Crash on Mac waking from sleep) created by
- […]
- 2:27 PM Ticket #19042 (Crash in event loop) closed by
- can't reproduce
- 2:12 PM Ticket #19030 (File history unreadable) closed by
- can't reproduce: The most likely cause of the ChimeraX file history being corrupted is …
- 2:07 PM Ticket #19014 (Crash gathering Linux info for bug reporter) closed by
- nonchimerax: ChimeraX is not finding the Nvidia graphics driver. If you haven't …
- 1:50 PM Ticket #19045 (Document info about checking web service/queue status) created by
- There is already a "Get info about a cxservices web job" link on the …
- 1:46 PM Ticket #19044 (Automatic notification of death of job workers) created by
- Need some automated task that runs every so often (5 minutes? 10 …
- 1:26 PM Ticket #19039 (Crash creating QWebEngineProfile) closed by
- can't reproduce
- 1:25 PM Ticket #19038 (ffmpeg: Permission Denied) closed by
- duplicate
- 1:20 PM Ticket #19036 (Crash in OpenGL swap buffers after status line expose event) closed by
- duplicate: Didn't get screened out despite being anonymous.
- 1:19 PM Ticket #19035 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by
- can't reproduce
- 1:16 PM Ticket #19034 (ffmpeg: Permission Denied) closed by
- duplicate: Hi Arvind, Thanks for reporting this problem. It is fixed in the …
- 1:15 PM Ticket #19033 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate: Duplicate of #18238
- 1:14 PM Ticket #19032 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate: Duplicate of #18238
- 1:13 PM Ticket #19031 (Crash after opening 12 sequences) closed by
- can't reproduce: No obvious error
- 12:42 PM Ticket #19025 (Crash drawing graphics after resize) closed by
- can't reproduce: The Python stack trace shows a Qt ResizeEvent was dispatched which …
- 12:06 PM Ticket #19028 (Crash using open/save dialog) closed by
- can't reproduce
- 12:01 PM Ticket #19043 ('pip install pyKVFinder' fails with empty error message) created by
- […]
- 11:59 AM Ticket #19027 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate: Duplicate of #18238
- 11:56 AM Ticket #19026 (Session restore: invalid load key) closed by
- limitation: Version 1.1!
- 11:41 AM Ticket #19021 (Didn't find section 'Peptide bond' in tab 'ISOLDE') closed by
- limitation
- 11:36 AM Ticket #19042 (Crash in event loop) created by
- […]
- 11:36 AM Ticket #19024 (Crash on Mac waking from sleep) closed by
- duplicate
- 11:31 AM Ticket #19023 (ffmpeg: Permission Denied) closed by
- duplicate
- 11:31 AM Ticket #19022 (ffmpeg: Permission Denied) closed by
- duplicate
- 11:25 AM Ticket #19020 (Various ViewDockX errors) closed by
- can't reproduce: Well, the Mol2 file needs to end with .mol2, not .mol2.txt. And the …
- 11:20 AM Ticket #19019 (Bad DCD file) closed by
- nonchimerax: Many follow-on errors after the bad DCD file. Perhaps if this happens …
- 11:17 AM Ticket #19018 (Bad DCD file) closed by
- nonchimerax
- 11:12 AM Ticket #19016 (Scalebar: invalid literal for int() with base 10) closed by
- duplicate: Duplicate of #16649
- 11:07 AM Ticket #19015 (Crash using open/save dialog) closed by
- can't reproduce
- 10:35 AM Ticket #19041 (chirality command incorrectly says S atom of ligand SAM is non-chiral) created by
- […]
- 5:24 AM Ticket #19040 (Web services down) created by
- […]
- 5:02 AM Ticket #19039 (Crash creating QWebEngineProfile) created by
- […]
- 4:36 AM Ticket #19038 (ffmpeg: Permission Denied) created by
- […]
Oct 5, 2025:
- 11:37 PM Ticket #19037 (SEQCROW: job.scratch_dir is None) created by
- […]
- 2:21 PM Ticket #19036 (Crash in OpenGL swap buffers after status line expose event) created by
- […]
- 2:57 AM Ticket #19035 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:07 AM Ticket #19034 (ffmpeg: Permission Denied) created by
- […]
Oct 4, 2025:
- 7:13 PM Ticket #19033 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 6:53 PM Ticket #19032 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 3:52 PM Ticket #19031 (Crash after opening 12 sequences) created by
- […]
- 6:23 AM Ticket #19030 (File history unreadable) created by
- […]
- 3:36 AM Ticket #19029 (ArtiaX: SuperQt slider tick interval: 'float' object cannot be ...) created by
- […]
- 2:50 AM Ticket #19028 (Crash using open/save dialog) created by
- […]
- 1:40 AM Ticket #19027 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 12:29 AM Ticket #19026 (Session restore: invalid load key) created by
- […]
Oct 3, 2025:
- 10:31 PM Ticket #19025 (Crash drawing graphics after resize) created by
- […]
- 6:53 PM Ticket #19024 (Crash on Mac waking from sleep) created by
- […]
- 4:25 PM Ticket #19023 (ffmpeg: Permission Denied) created by
- […]
- 3:06 PM Ticket #19022 (ffmpeg: Permission Denied) created by
- […]
- 9:33 AM Ticket #19021 (Didn't find section 'Peptide bond' in tab 'ISOLDE') created by
- […]
- 7:40 AM Ticket #19020 (Various ViewDockX errors) created by
- […]
- 7:25 AM Ticket #19019 (Bad DCD file) created by
- […]
- 7:24 AM Ticket #19018 (Bad DCD file) created by
- […]
- 6:16 AM Ticket #19017 (isolde sim start: OpenMMException: Error compiling kernel) created by
- […]
- 5:20 AM Ticket #19016 (Scalebar: invalid literal for int() with base 10) created by
- […]
- 12:21 AM Ticket #19015 (Crash using open/save dialog) created by
- […]
Oct 2, 2025:
- 9:36 PM Ticket #19014 (Crash gathering Linux info for bug reporter) created by
- […]
- 2:22 PM Ticket #9387 (ESPALOMA-based parameter estimation) closed by
- fixed: Minimization has been implemented via Antechamber+OpenMM rather than …
- 12:07 PM 2025-10-2 edited by
- (diff)
- 11:59 AM Dev2025-10-6 edited by
- (diff)
- 11:59 AM DeveloperMeetings edited by
- (diff)
- 10:04 AM Ticket #19011 ('NoneType' object has no attribute 'image_colors') closed by
- duplicate: Use the daily build.
- 10:02 AM Ticket #19007 (Crash during Boltz prediction) closed by
- nonchimerax: This ChimeraX crash was probably caused by graphics driver problems. …
- 9:58 AM Ticket #19006 (Crash on Mac waking from sleep) closed by
- duplicate: This ChimeraX crash is caused by a bug in the Qt window toolkit that …
- 8:46 AM Ticket #19012 (Crash moving between screens) closed by
- duplicate
- 8:43 AM Ticket #19010 (ffmpeg: Permission denied) closed by
- duplicate: Hi Sean, Thanks for reporting this problem. It is fixed in the …
- 8:39 AM Ticket #19009 (Crash showing main graphics window) closed by
- limitation: version 1.4; remote display
- 8:37 AM Ticket #19008 (Unknown crash) closed by
- can't reproduce
- 6:02 AM Ticket #19013 (HtmlView: session and view must be set) created by
- […]
- 5:47 AM Ticket #19012 (Crash moving between screens) created by
- […]
- 5:05 AM Ticket #19011 ('NoneType' object has no attribute 'image_colors') created by
- […]
- 4:11 AM Ticket #19010 (ffmpeg: Permission denied) created by
- […]
- 1:12 AM Ticket #19009 (Crash showing main graphics window) created by
- […]
Oct 1, 2025:
- 5:30 PM Ticket #19008 (Unknown crash) created by
- […]
- 3:42 PM Ticket #18601 (Chimera Not Using Graphics Card) closed by
- nonchimerax
- 3:31 PM Ticket #19007 (Crash during Boltz prediction) created by
- […]
- 12:53 PM ChangeLog edited by
- (diff)
- 11:47 AM ChangeLog edited by
- (diff)
- 11:47 AM ChangeLog edited by
- (diff)
- 10:40 AM Ticket #19005 (GPU failure after large image save) closed by
- nonchimerax: Lots of problems with an external display and GPU. The GPU is an …
- 10:37 AM Ticket #19006 (Crash on Mac waking from sleep) created by
- […]
- 9:34 AM Ticket #19005 (GPU failure after large image save) created by
- […]
- 9:30 AM Ticket #19004 (Crash on exit) closed by
- duplicate: From before the crash-on-exit workaround went in.
- 9:17 AM Ticket #19002 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') closed by
- duplicate: Duplicate of #18731
- 9:05 AM Ticket #19001 (Crash on Mac waking from sleep) closed by
- duplicate
- 7:06 AM Ticket #19004 (Crash on exit) created by
- […]
- 5:47 AM Ticket #19003 (isolde sim start: OpenMMException: Error compiling kernel) created by
- […]
- 5:19 AM Ticket #19002 ('CategorizedOptionsPanel' object has no attribute 'currentIndex') created by
- […]
- 3:20 AM Ticket #19001 (Crash on Mac waking from sleep) created by
- […]
Sep 30, 2025:
- 6:07 PM Ticket #18992 (Re-saving flipped map → empty file) closed by
- fixed: Fixed. There was already code to avoid overwriting a volume file with …
- 3:49 PM Ticket #18864 (Text shown as question marks on MacOS Tahoe) closed by
- nonchimerax: Glad that fixed it.
- 1:42 PM Ticket #18712 ('BlobOutlineBox' object has no attribute 'data') closed by
- fixed: As of tomorrow's daily build, BlobOutlineBoxes are no longer …
- 1:10 PM Ticket #19000 (Inadequate OpenGL) closed by
- limitation
- 1:08 PM Ticket #18999 (Crash creating sequence viewer for FASTA file) closed by
- can't reproduce
- 1:06 PM Ticket #18998 (Crash in graphics driver during Qt drawing) closed by
- can't reproduce
- 12:05 PM Ticket #18996 (Crash creating QWebEngineProfile) closed by
- can't reproduce
- 12:03 PM Ticket #18995 (Crash moving window between screens) closed by
- duplicate
- 11:36 AM Dev2025-10-6 created by
- 11:35 AM Dev2025-9-29 edited by
- (diff)
- 11:35 AM 2025-10-2 created by
- 11:34 AM 2025-9-25 edited by
- (diff)
- 11:34 AM 2025-9-25 edited by
- (diff)
- 11:31 AM DeveloperMeetings edited by
- (diff)
- 11:07 AM Ticket #18988 ('DicomGrid' object has no attribute 'reference_data') closed by
- can't reproduce: User probably tried opening a DICOM file that has no image data. There …
- 11:01 AM Ticket #18993 (Crash in event loop) closed by
- can't reproduce
- 10:57 AM Ticket #18991 (ffmpeg: Permission denied) closed by
- duplicate
- 10:55 AM Ticket #18990 (Crash calling some object's finalizer) closed by
- can't reproduce
- 10:48 AM Ticket #17721 (DICOM: Cancer Imaging Archive timeout) closed by
- nonchimerax: We can't control TCIA's availability, but it would be good to catch …
- 10:47 AM Ticket #18079 (Setting 'display' attribute of closed segmentation cursor) closed by
- fixed: This ticket should be fixed by the same fix from #18556 and others. …
- 10:41 AM Ticket #18895 (Render By Attribute menu ownership) closed by
- duplicate: Duplicate of #18610
- 10:04 AM Ticket #18894 (Crash using open/save dialog) closed by
- can't reproduce
- 9:56 AM Ticket #18893 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by
- duplicate: Duplicate of #18630
- 9:55 AM Ticket #18892 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by
- duplicate: Duplicate of #18630
- 9:54 AM Ticket #18891 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by
- duplicate: Duplicate of #18630
- 9:49 AM Ticket #18890 (Crash in event loop) closed by
- can't reproduce
- 9:43 AM Ticket #18889 (Crash in garbage collection) closed by
- duplicate
- 9:42 AM Ticket #18888 ('pip install pyKVFinder' fails with empty error message) closed by
- duplicate: Still waiting for this to be reported in the daily build.
- 8:58 AM Ticket #19000 (Inadequate OpenGL) created by
- […]
- 4:38 AM Ticket #18999 (Crash creating sequence viewer for FASTA file) created by
- […]
- 12:05 AM Ticket #18998 (Crash in graphics driver during Qt drawing) created by
- […]
Sep 29, 2025:
- 7:25 PM Dev2025-9-29 edited by
- (diff)
- 7:17 PM DeveloperMeetings edited by
- (diff)
- 6:05 PM Ticket #18997 (QScore: scores is None) created by
- […]
- 6:05 PM Ticket #18996 (Crash creating QWebEngineProfile) created by
- […]
- 6:05 PM Ticket #18995 (Crash moving window between screens) created by
- […]
- 6:05 PM Ticket #18994 (Alignment observer not in list) created by
- […]
- 6:05 PM Ticket #18993 (Crash in event loop) created by
- […]
- 6:05 PM Ticket #18992 (Re-saving flipped map → empty file) created by
- […]
- 6:05 PM Ticket #18991 (ffmpeg: Permission denied) created by
- […]
- 6:05 PM Ticket #18990 (Crash calling some object's finalizer) created by
- […]
- 6:05 PM Ticket #18989 (glClear: invalid framebuffer operation) created by
- […]
- 6:05 PM Ticket #18988 ('DicomGrid' object has no attribute 'reference_data') created by
- […]
Sep 27, 2025:
- 5:10 PM Ticket #18895 (Render By Attribute menu ownership) created by
- […]
- 1:03 PM Ticket #18894 (Crash using open/save dialog) created by
- […]
- 12:29 PM Ticket #18893 (Crash closing tool with in-window status bar with PySide 6.9.2) created by
- […]
- 7:45 AM Ticket #18892 (Crash closing tool with in-window status bar with PySide 6.9.2) created by
- […]
- 4:01 AM Ticket #18891 (Crash closing tool with in-window status bar with PySide 6.9.2) created by
- […]
- 3:56 AM Ticket #18890 (Crash in event loop) created by
- […]
- 2:56 AM Ticket #18889 (Crash in garbage collection) created by
- […]
Sep 26, 2025:
- 8:33 PM Ticket #18888 ('pip install pyKVFinder' fails with empty error message) created by
- […]
- 7:25 PM Ticket #18887 (Crash in event loop) created by
- […]
- 3:26 PM Ticket #18668 ('NoneType' object has no attribute 'image_colors') closed by
- fixed
- 3:24 PM Ticket #18753 (Closing segmentation cursors: self._positions is None) closed by
- fixed: If you accidentally close a segmentation cursor, but the tool is open …
- 2:54 PM Ticket #18760 ('MRCGrid' object has no attribute 'dicom_data') closed by
- fixed: Use 1.10.1
- 2:54 PM Ticket #18781 (Orthoplanes: 'NoneType' object has no attribute 'image_colors') closed by
- duplicate: Same resolution as #18854.
- 2:53 PM Ticket #18854 (Orthoplanes: self.view.drawing.parent is None) closed by
- fixed: I have added a test for None in the offending function.
- 2:06 PM Ticket #18885 (ffmpeg permission error) closed by
- duplicate
- 1:58 PM Ticket #18886 (Associated structure with profile grid sequence is slow) created by
- […] paired.fasta
- 12:37 PM Ticket #18885 (ffmpeg permission error) created by
- […] chimerax 1.10 bug 20250926.docx
- 9:45 AM Ticket #18884 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:45 AM Ticket #18883 (Cannot capture thumbnail: inadequate OpenGL) closed by
- limitation
- 9:43 AM Ticket #18882 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:42 AM Ticket #18881 (Crash in garbage collection) closed by
- duplicate
- 7:07 AM Ticket #18884 (Crash on Mac waking from sleep) created by
- […]
- 5:51 AM Ticket #18883 (Cannot capture thumbnail: inadequate OpenGL) created by
- […]
- 3:57 AM Ticket #18882 (Crash on Mac waking from sleep) created by
- […]
- 1:09 AM Ticket #18881 (Crash in garbage collection) created by
- […]
Sep 25, 2025:
- 5:48 PM Ticket #18870 (Crash at startup) closed by
- nonchimerax: Try running ChimeraX directly on your computer instead of remotely on …
- 4:42 PM Ticket #18880 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by
- duplicate: Duplicate of #18630
- 4:26 PM Ticket #18877 ('MRCGrid' object has no attribute 'dicom_data') closed by
- duplicate
- 4:25 PM Ticket #18876 ('MRCGrid' object has no attribute 'dicom_data') closed by
- duplicate
- 1:53 PM Ticket #18880 (Crash closing tool with in-window status bar with PySide 6.9.2) created by
- […]
- 1:40 PM Ticket #18879 (Scenes tool: using Delete leaves name filled in and Update button) created by
- should clear name and change Update to Save because when you delete …
- 1:34 PM Ticket #18878 (Somehow model.overall_color is being saved/restored) created by
- […]
- 1:25 PM Ticket #18874 (Crash in swap_buffers) closed by
- can't reproduce: A lot going on in the crash stack trace. It appears a display was …
- 12:49 PM Ticket #18877 ('MRCGrid' object has no attribute 'dicom_data') created by
- […]
- 12:37 PM Ticket #18876 ('MRCGrid' object has no attribute 'dicom_data') created by
- […]
- 10:58 AM Ticket #18875 (Scenes involving deleted atoms needs better error handling) created by
- […]
- 10:50 AM Ticket #18873 ('MRCGrid' object has no attribute 'dicom_data') closed by
- duplicate
- 10:45 AM Ticket #18874 (Crash in swap_buffers) created by
- […]
- 10:28 AM Ticket #18871 (Crash at startup) closed by
- duplicate: Duplicate of #18870
- 10:25 AM Ticket #18851 (OpenMM compiler failure on Windows) closed by
- duplicate: Continued in #18869
- 10:21 AM Ticket #18868 (Crash in python_instances_of_class) closed by
- duplicate
- 10:20 AM Ticket #18867 (Crash in event loop) closed by
- can't reproduce: Crash in QAccessible-related code, so some similarity to the other …
- 10:15 AM Ticket #18866 (Crash in event loop) closed by
- can't reproduce
- 8:30 AM Ticket #18873 ('MRCGrid' object has no attribute 'dicom_data') created by
- […]
- 7:37 AM Ticket #18872 (File→Open "copy location" does not paste into command line on Ubuntu) created by
- […]
- 4:02 AM Ticket #18871 (Crash at startup) created by
- […]
- 3:03 AM Ticket #18870 (Crash at startup) created by
- […]
Sep 24, 2025:
- 10:12 PM Ticket #18869 (OpenMM compiler failure on Windows) created by
- […] 10mer_2.pdb
- 6:32 PM Ticket #18868 (Crash in python_instances_of_class) created by
- […]
- 6:14 PM Ticket #18867 (Crash in event loop) created by
- […]
- 6:11 PM Ticket #18866 (Crash in event loop) created by
- […]
- 1:04 PM Ticket #18865 (Add option to fetch emdb map when opening a PDB structure) closed by
- fixed: Done. Example open 7pkz fetchEmdbMap true I added an option …
- 12:35 PM Ticket #18865 (Add option to fetch emdb map when opening a PDB structure) created by
- Begin forwarded message: From: Samuel Haysom via ChimeraX-users …
- 10:57 AM Ticket #18864 (Text shown as question marks on MacOS Tahoe) created by
- […] Screen shot.pdf
- 10:51 AM Ticket #18863 (Number_Entry widget: could not convert string to float: '') closed by
- fixed: Fixed. Needed to change the scalebar code which was looking for a …
- 10:43 AM Ticket #18859 (Crash drawing Side View) closed by
- nonchimerax
- 9:21 AM Ticket #18863 (Number_Entry widget: could not convert string to float: '') created by
- […]
- 9:06 AM Ticket #18862 (Molecular Dynamics Viewer: list index out of range) closed by
- limitation: Hi Abdul, The Molecular Dynamics viewer does not work with a series …
- 8:44 AM Ticket #18861 (MemoryError opening mmCIF files) closed by
- duplicate
- 8:44 AM Ticket #18860 (Crash destroying tool window) closed by
- can't reproduce
- 8:40 AM Ticket #18858 (Crash on Mac waking from sleep) closed by
- duplicate
- 8:37 AM Ticket #18857 (Crash on Mac waking from sleep) closed by
- duplicate
- 8:36 AM Ticket #18856 (ffmpeg: Permission denied) closed by
- duplicate
- 8:34 AM Ticket #18855 (Crash on Mac waking from sleep) closed by
- duplicate
- 7:33 AM Ticket #18862 (Molecular Dynamics Viewer: list index out of range) created by
- […]
- 6:23 AM Ticket #18861 (MemoryError opening mmCIF files) created by
- […]
- 4:30 AM Ticket #18860 (Crash destroying tool window) created by
- […]
Sep 23, 2025:
- 8:51 PM Ticket #18859 (Crash drawing Side View) created by
- […]
- 7:42 PM Ticket #18858 (Crash on Mac waking from sleep) created by
- […]
- 6:05 PM Ticket #18857 (Crash on Mac waking from sleep) created by
- […]
- 3:01 PM Ticket #18856 (ffmpeg: Permission denied) created by
- […]
- 2:23 PM Ticket #18855 (Crash on Mac waking from sleep) created by
- […]
- 2:12 PM Ticket #18854 (Orthoplanes: self.view.drawing.parent is None) created by
- […]
- 1:23 PM Ticket #18852 (Boltz install fails on Windows because git is not available) closed by
- fixed: Fixed in Sept 24, 2025 daily build. Can pip install from github using …
- 12:57 PM Ticket #18853 (Windows build from scratch has become very slow) created by
- I just made a ChimeraX build on Windows on vizvault.cgl.ucsf.edu and …
- 11:18 AM Ticket #18850 (Error downloading Boltz parameters) closed by
- nonchimerax: This error means Boltz installation failed to get the chemical …
- 11:12 AM Ticket #18852 (Boltz install fails on Windows because git is not available) created by
- […]
- 10:34 AM Ticket #18847 (Crash during Boltz prediction) closed by
- nonchimerax: The Log shows the following error before ChimeraX crashed Invalid …
- 10:22 AM Dev2025-9-29 created by
- 10:22 AM 2025-9-25 created by
- 10:21 AM DeveloperMeetings edited by
- (diff)
- 9:29 AM Ticket #18844 (OpenMM compiler failure on Windows) closed by
- duplicate: Duplicate of #18851, but that ticket has the input file attached.
- 9:21 AM Ticket #18849 (ffmpeg: Permission denied) closed by
- duplicate
- 9:17 AM Ticket #18848 (Crash on Mac waking from sleep) closed by
- duplicate
- 9:11 AM Ticket #18846 (Crash in event loop) closed by
- can't reproduce: Possibly while using Render By Attribute
- 9:08 AM Ticket #18845 (Crash installing pyKVFinder from PyPi) closed by
- can't reproduce
- 7:51 AM Ticket #18851 (OpenMM compiler failure on Windows) created by
- […] 10mer_2.pdb
- 6:28 AM Ticket #18850 (Error downloading Boltz parameters) created by
- […]
- 12:50 AM Ticket #18849 (ffmpeg: Permission denied) created by
- […]
- 12:43 AM Ticket #18848 (Crash on Mac waking from sleep) created by
- […]
- 12:27 AM Ticket #18847 (Crash during Boltz prediction) created by
- […]
Sep 22, 2025:
- 5:56 PM Ticket #18846 (Crash in event loop) created by
- […]
- 5:28 PM Ticket #18845 (Crash installing pyKVFinder from PyPi) created by
- […]
- 5:26 PM Dev2025-9-22 edited by
- (diff)
- 4:17 PM Ticket #18844 (OpenMM compiler failure on Windows) created by
- […]
- 3:02 PM Dev2025-9-22 edited by
- (diff)
- 11:32 AM Ticket #18834 (Qt crash calling observer when giving a window keyboard focus) closed by
- can't reproduce: No Log so hard to know what the user was doing.
- 11:27 AM Ticket #18832 (ArrayMemoryError hiding atoms) closed by
- limitation: Opened 480,000 atom 7pkz rat liver vault structure and showed …
- 11:17 AM Ticket #18843 (Molecular Dynamics Viewer: list index out of range) closed by
- limitation
- 11:15 AM Ticket #18842 (Crash in event loop) closed by
- can't reproduce: YA allocation/deallocation crash
- 11:12 AM Ticket #18841 (Crash getting missing-structure pseudobonds while deleting atoms) closed by
- can't reproduce
- 11:05 AM Ticket #18840 (Can't save session because NewerVersionQuery not listed) closed by
- duplicate
- 10:57 AM Ticket #18839 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:56 AM Ticket #18838 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate: Duplicate of #18238
- 10:43 AM Ticket #18837 (Crash in event loop) closed by
- can't reproduce: Again some kind of memory allocation/deallocation problem
- 10:42 AM Ticket #18836 (Crash using save dialog) closed by
- can't reproduce: Some kind of memory allocation/deallocation problem while save dialog …
- 10:37 AM Ticket #18835 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by
- duplicate: Duplicate of #18804
- 10:26 AM Ticket #18833 (ffmpeg: Permission Denied) closed by
- duplicate
- 10:24 AM Ticket #18831 (AddH: more than 2 coplanar positions specified) closed by
- not a bug
- 10:23 AM Ticket #18830 (Alignment headers somehow being directly saved in sessions) closed by
- duplicate: Duplicate of #5560
- 10:18 AM Ticket #18829 (Crash in event loop) closed by
- can't reproduce: Looks like some kind of memory allocation/deallocation problem.
- 10:15 AM Ticket #18828 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate: Duplicate of #18238
- 9:04 AM Ticket #18843 (Molecular Dynamics Viewer: list index out of range) created by
- […]
- 5:07 AM Ticket #18842 (Crash in event loop) created by
- […]
- 4:40 AM Ticket #18841 (Crash getting missing-structure pseudobonds while deleting atoms) created by
- […]
- 3:49 AM Ticket #18840 (Can't save session because NewerVersionQuery not listed) created by
- […]
Sep 21, 2025:
- 10:44 PM Ticket #18839 (MemoryError opening mmCIF files) created by
- […]
- 9:27 PM Ticket #18838 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 9:13 PM Ticket #18837 (Crash in event loop) created by
- […]
- 5:52 PM Ticket #18836 (Crash using save dialog) created by
- […]
- 6:32 AM Ticket #18835 (Vina output in ViewDock: KeyError: 'RMSD l.b.') created by
- […]
Sep 20, 2025:
- 8:08 AM Ticket #18834 (Qt crash calling observer when giving a window keyboard focus) created by
- […]
- 7:49 AM Ticket #18833 (ffmpeg: Permission Denied) created by
- […]
- 2:37 AM Ticket #18832 (ArrayMemoryError hiding atoms) created by
- […]
Sep 19, 2025:
- 10:27 PM Ticket #18831 (AddH: more than 2 coplanar positions specified) created by
- […]
- 8:28 PM Ticket #18830 (Alignment headers somehow being directly saved in sessions) created by
- […]
- 8:27 PM Ticket #18829 (Crash in event loop) created by
- […]
- 8:22 PM Ticket #18828 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 6:12 PM Ticket #18827 (Allow alphafold dimers command to restrict to nearby sequences) closed by
- fixed: Done. Added maxSpacing option. It applies to all output formats …
- 6:11 PM Ticket #18827 (Allow alphafold dimers command to restrict to nearby sequences) created by
- It is sometimes useful to restrict predictions of dimers to sequences …
- 5:53 PM Ticket #18826 (Make alphafold dimers and monomers commands write Boltz yaml input files) closed by
- fixed: Done. I added an outputYaml option (default false) and an …
- 5:46 PM Ticket #18826 (Make alphafold dimers and monomers commands write Boltz yaml input files) created by
- The alphafold dimers and monomers commands currently can write out …
- 4:28 PM Ticket #18825 (Crash opening .cif file) created by
- […]
- 12:54 PM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) closed by
- nonchimerax
- 12:54 PM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) reopened by
- 12:54 PM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) closed by
- not a bug: Computer did not have OpenGL 3.3 support as it said at the beginning …
- 12:51 PM Ticket #18822 (Crash creating QWebEngineProfile) closed by
- can't reproduce: Seems like a Qt bug.
- 9:10 AM Ticket #18824 (Capture file-history thumbnail: 'NoneType' object is not subscriptable) created by
- […]
- 9:00 AM Ticket #18821 (Crash in event loop) closed by
- can't reproduce
- 8:51 AM Ticket #18820 (session.warning should be session.logger.warning) closed by
- fixed
- 8:16 AM Ticket #18823 (SEQCROW: reading ORCA output: could not convert string to float: 'DampErr') created by
- […]
Sep 18, 2025:
- 9:22 PM Ticket #18822 (Crash creating QWebEngineProfile) created by
- […]
- 8:10 PM Ticket #18821 (Crash in event loop) created by
- […]
- 6:02 PM Ticket #18820 (session.warning should be session.logger.warning) created by
- […]
- 5:33 PM Ticket #18815 (Crash on Mac waking from sleep) closed by
- duplicate
- 5:17 PM Ticket #18819 (Improve Mac crash dump formatting of stack trace) created by
- The Mac crash dumps are hard to read in Trac because the "threads" key …
- 3:19 PM Ticket #18804 (Vina output in ViewDock: KeyError: 'RMSD l.b.') closed by
- fixed: Hi Kathe, Thanks for reporting this problem. I have committed a fix, …
- 3:18 PM Ticket #18809 (Various DLL load failures) closed by
- can't reproduce: Looks like a corrupt installation.
- 2:32 PM Ticket #18818 (Graphics hardware encountered an error and was reset) closed by
- duplicate
- 2:20 PM 2025-9-19 edited by
- (diff)
- 2:11 PM Ticket #18177 (ffmpeg permission denied, Mac, ChimeraX 1.10) closed by
- fixed: Use 1.10.1
- 2:10 PM Ticket #18709 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:06 PM Ticket #18799 (ffmpeg: Permission denied) closed by
- duplicate: Use 1.10.1
- 12:13 PM Ticket #18818 (Graphics hardware encountered an error and was reset) created by
- […]
- 11:46 AM Ticket #18817 (Resize Ramachandran plot: 'box_aspect' and 'fig_aspect' must be positive) created by
- […]
- 10:55 AM Ticket #18816 (SEQCROW: 'ArtistList' object has no attribute 'remove') closed by
- duplicate: Duplicate of #17581
- 10:51 AM Ticket #18814 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:49 AM Ticket #18813 (ffmpeg: Permission Denied) closed by
- duplicate
- 10:48 AM Ticket #18812 (Crash on Mac waking from sleep) closed by
- duplicate
- 10:47 AM Ticket #18811 (Crash on Mac in OpenGL driver) closed by
- duplicate
- 10:41 AM Ticket #18808 (Various sequence-viewer errors) closed by
- can't reproduce: Pretty good chance they've already been fixed
- 10:38 AM Ticket #18807 (Crash in event loop) closed by
- can't reproduce: From the traceback it seems the crash occurred while starting the GUI, …
- 10:33 AM Ticket #18806 (ISOLDE Ramachandran Plot: UnboundLocalError: cannot access local ...) closed by
- duplicate
- 10:24 AM Ticket #18802 (ffmpeg: Permission Denied) closed by
- duplicate: Hi Thom, Thanks for reporting this problem. It is fixed in the …
- 10:21 AM Ticket #18432 (kvfinder KeyError: 'KAA') closed by
- fixed: Fixed by pyKVFinder 0.8.3
- 6:55 AM Ticket #18816 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by
- […]
- 6:50 AM Ticket #18815 (Crash on Mac waking from sleep) created by
- […]
- 6:48 AM Ticket #18814 (Crash on Mac waking from sleep) created by
- […]
- 4:46 AM Ticket #18813 (ffmpeg: Permission Denied) created by
- […]
- 2:54 AM Ticket #18812 (Crash on Mac waking from sleep) created by
- […]
- 2:52 AM Ticket #18811 (Crash on Mac in OpenGL driver) created by
- […]
- 1:03 AM Ticket #18810 (QScore: 'scores' is None) created by
- […]
- 1:03 AM Ticket #18809 (Various DLL load failures) created by
- […]
- 12:14 AM Ticket #18808 (Various sequence-viewer errors) created by
- […]
Sep 17, 2025:
- 11:24 PM Ticket #18807 (Crash in event loop) created by
- […]
- 10:41 PM Ticket #18806 (ISOLDE Ramachandran Plot: UnboundLocalError: cannot access local ...) created by
- […]
- 10:37 PM Ticket #18805 (ISOLDE Ramachandran Plot: UnboundLocalError: cannot access local ...) created by
- […]
- 9:05 PM Ticket #18804 (Vina output in ViewDock: KeyError: 'RMSD l.b.') created by
- […]
- 5:58 PM 2025-9-19 edited by
- (diff)
- 5:58 PM DeveloperMeetings edited by
- (diff)
- 5:09 PM Ticket #18803 (ViewDock H-bonds → traceback) created by
- […]
- 4:03 PM Training edited by
- (diff)
- 4:01 PM Training edited by
- (diff)
- 3:02 PM Ticket #18802 (ffmpeg: Permission Denied) created by
- […]
- 10:06 AM Ticket #18800 (Opening OME TIFF stack: KeyError: 'Name') closed by
- fixed: Fixed. Opened an OME TIFF file where the Image tag did not have a …
- 9:50 AM Ticket #18801 (Crash closing tool with in-window status bar with PySide 6.9.2) closed by
- duplicate
- 9:42 AM Ticket #18801 (Crash closing tool with in-window status bar with PySide 6.9.2) created by
- […]
- 9:21 AM Ticket #18798 (AddH: Singular matrix) closed by
- not a bug: Hi Jitendra, Thanks for reporting this problem. It typically …
- 9:17 AM Ticket #18797 (Crash opening file) closed by
- can't reproduce
- 9:10 AM Ticket #18800 (Opening OME TIFF stack: KeyError: 'Name') created by
- […]
- 6:45 AM Ticket #18799 (ffmpeg: Permission denied) created by
- […]
- 5:50 AM Ticket #18798 (AddH: Singular matrix) created by
- […]
Sep 16, 2025:
- 5:09 PM Ticket #18692 (Sequence viewer 'PySide6.QtWebEngineCore.QWebEngineUrlRequestInfo' ...) closed by
- fixed: I think this is fixed for the same reason #18646 is fixed. I played …
- 3:34 PM Ticket #18646 (log hyperlink: 'PySide6.QtCore.QUrl.toString' called with wrong ...) closed by
- fixed: PySide6 expects a QUrl.ComponentFormatingOption, not a …
- 2:34 PM Ticket #18653 (PySide: crash destroying tool) closed by
- fixed: I think 6.9.2 or possibly some code change made while I was away fixed …
- 2:30 PM Ticket #18658 (PySide: closing Renumber Residues) closed by
- can't reproduce: Wasn't able to reproduce this on *my* Mac. I did a fresh build with …
- 2:18 PM Ticket #18797 (Crash opening file) created by
- […]
- 10:33 AM Ticket #18795 (HDF5: file signature not found) closed by
- can't reproduce: This is the 5th report of HDF "file signature not found". Four of the …
- 10:29 AM Ticket #18794 (Boltz: _each_ligand_predictions: name 'self' is not defined) closed by
- fixed: Fixed. Predicting for multiple ligands with Boltz without predicting …
- 10:22 AM Dev2025-9-22 created by
- 10:19 AM 2025-9-19 created by
- 10:18 AM DeveloperMeetings edited by
- (diff)
- 10:16 AM DeveloperMeetings edited by
- (diff)
- 9:07 AM Ticket #18796 (Crash moving window between screens) closed by
- duplicate
- 9:05 AM Ticket #18796 (Crash moving window between screens) created by
- […]
- 8:46 AM Ticket #18792 (Crash on Mac waking from sleep) closed by
- duplicate
- 8:44 AM Ticket #18791 (Crash adding/removing screen) closed by
- duplicate
- 8:39 AM Ticket #18795 (HDF5: file signature not found) created by
- […]
- 6:53 AM Ticket #18794 (Boltz: _each_ligand_predictions: name 'self' is not defined) created by
- […]
- 1:01 AM Ticket #18793 (CliX: Could not determine home directory) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
