Opened 5 years ago

Closed 5 years ago

#3288 closed defect (duplicate)

Model panel, list index out of range, restoring session

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: General Controls Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-11-26)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | 'clip' is a prefix of an existing command 'clipper'  
  
UCSF ChimeraX version: 0.91 (2019-11-26)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/chunyan/2020/gp8-asym/gp8-asym-20200521.cxs

opened ChimeraX session  
Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  

> view p6

> view p3

> open /Users/chunyan/2020/gp8-asym/gp8-asym-20200521.cxs

opened ChimeraX session  
Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  

> preset cartoons/nucleotides cylinders/stubs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides stubs

  

> select clear

> toolshed show "Side View"

> view orient

> transparency #7 30

> transparency #7 0

Expected a keyword  

> surface dust #7 size 30

> hide sel cartoons

> select clear

> select clear

> hide sel atoms

> show sel atoms

> hide sel atoms

> show sel cartoons

> show sel atoms

> select clear

> open /Users/chunyan/2020/gp8-asym/gp8-asym-3.8-masked.mrc

Opened gp8-asym-3.8-masked.mrc, grid size 400,400,400, pixel 1.05, shown at
level 0.00372, step 2, values float32  
Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  

> volume #25 level 0.007402

> select #25

2 models selected  

> ui mousemode rightMode "rotate selected models"

> ui mousemode rightMode "translate selected models"

> volume #10 color #ffff0080

> volume #10 color #ff000080

> volume #10 color #fff30080

> volume #10 color #fff40080

> volume #10 color #fff50080

> volume #10 color #fff80080

> volume #10 color #fffe0080

> volume #10 color #ffff0080

> volume #10 color #ffb20080

> volume #10 color #ff970080

> volume #10 color #ff970280

> volume #10 color #ff970680

> volume #10 color #ff970682

> volume #10 color #ff970686

> volume #10 color #ff97069f

> volume #10 color #ff9706ba

> volume #10 color #ff9706d7

> volume #10 color #ff9706f2

> volume #10 color #ff9706

> volume #10 color #ff9705

> volume #10 color #ff9701

> volume #10 color #ff9700

> volume #10 color #ff9600

> volume #10 color #ff9400

> volume #10 color #ff8700

> volume #10 color #ff8000

> volume #10 color #ff7600

> volume #10 color #ff7400

> volume #10 color #ff6e00

> volume #10 color #ff6a00

> volume #10 color #ff6900

> volume #10 color #ff6c00

> volume #10 color #ff6d00

> volume #10 color #ff7100

> volume #10 color #ff7800

> volume #10 color #ff7c00

> volume #10 color #ff7f00

> volume #10 color #ff8200

> volume #10 color #ff8500

> volume #10 color #ff8600

> volume #10 color #ff8800

> volume #10 color #ff8900

> volume #10 color #ff8b00

> volume #10 color #ff8f00

> volume #10 color #ff9100

> volume #10 color #ff9200

> volume #10 color #ff9300

> volume #10 color #ff9400

> volume #10 color #ff9300

> volume #10 color #ff9200

> volume #10 color #ff8f00

> volume #10 color #ff8e00

> volume #10 color #ff8d00

> volume #10 color darkorange

> volume #10 color #ff8b00

> volume #10 color #ff8800

> volume #10 color #ff8600

> volume #10 color #ff8500

> volume #10 color #ff8400

> volume #10 color #ff8300

> volume #10 color #ff8200

> volume #10 color #ff8100

> volume #10 color #ff8000

> volume #10 color #ff8a00

> volume #10 color #ff8e00

> volume #10 color #ff9400

> volume #10 color #ff9600

> volume #10 color #ff9700

> lighting soft

> fitmap #25 inMap #11

Fit map gp8-asym-3.8-masked.mrc in map gp8-basen-new.mrc using 44005 points  
correlation = 0.9045, correlation about mean = 0.7313, overlap = 7.239  
steps = 172, shift = 16, angle = 7.26 degrees  
  
Position of gp8-asym-3.8-masked.mrc (#25) relative to gp8-basen-new.mrc (#11)
coordinates:  
Matrix rotation and translation  
0.11304689 0.99358827 -0.00165499 -21.85520186  
0.99358559 -0.11304151 0.00304704 24.49850256  
0.00284042 -0.00198884 -0.99999399 420.92730551  
Axis -0.74600412 -0.66594121 -0.00039710  
Axis point 0.00000000 22.48019073 210.44189297  
Rotation angle (degrees) 179.80661289  
Shift along axis -0.17764405  
  

> select clear

Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  

> lighting flat

Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  

Expected a keyword  

> select #37

49008 atoms, 49740 bonds, 1 model selected  

> show sel cartoons

> volume #15 level 0.01338

> surface dust #15 size 40

> lighting soft

> volume #15 level 0.0109

> lighting flat

Expected a keyword  

> select #37

49008 atoms, 49740 bonds, 1 model selected  

> ui mousemode rightMode "rotate selected models"

> fitmap #37 inMap #15

Fit molecule gp8-new-assembled.pdb (#37) to map tail-3.4-with-gp17N.mrc (#15)
using 49008 atoms  
average map value = 0.01759, steps = 100  
shifted from previous position = 0.232  
rotated from previous position = 6.63 degrees  
atoms outside contour = 17140, contour level = 0.010899  
  
Position of gp8-new-assembled.pdb (#37) relative to tail-3.4-with-gp17N.mrc
(#15) coordinates:  
Matrix rotation and translation  
0.86311350 -0.50500130 0.00296534 134.14689635  
0.50500449 0.86311664 -0.00039374 -77.14260288  
-0.00236060 0.00183735 0.99999553 -1.31341551  
Axis 0.00220894 0.00527309 0.99998366  
Axis point 209.36258472 208.89278919 0.00000000  
Rotation angle (degrees) 30.33209188  
Shift along axis -1.42385073  
  

> select #25

3 models selected  

> ui mousemode rightMode "rotate selected models"

> fitmap #25 inMap #15

Fit map gp8-asym-3.8-masked.mrc in map tail-3.4-with-gp17N.mrc using 44005
points  
correlation = 0.8297, correlation about mean = 0.6237, overlap = 8.214  
steps = 100, shift = 2.11, angle = 9.76 degrees  
  
Position of gp8-asym-3.8-masked.mrc (#25) relative to tail-3.4-with-gp17N.mrc
(#15) coordinates:  
Matrix rotation and translation  
0.86336823 -0.50453896 0.00597993 133.38722274  
0.50455144 0.86338137 -0.00069311 -76.87992840  
-0.00481326 0.00361559 0.99998189 1.33029931  
Axis 0.00426961 0.01069526 0.99993369  
Axis point 208.67695926 207.85455238 0.00000000  
Rotation angle (degrees) 30.30338631  
Shift along axis 1.07747130  
  

> fitmap #25 inMap #11

Fit map gp8-asym-3.8-masked.mrc in map gp8-basen-new.mrc using 44005 points  
correlation = 0.9046, correlation about mean = 0.7316, overlap = 7.235  
steps = 48, shift = 0.133, angle = 0.349 degrees  
  
Position of gp8-asym-3.8-masked.mrc (#25) relative to gp8-basen-new.mrc (#11)
coordinates:  
Matrix rotation and translation  
0.80401021 -0.59460524 0.00349140 165.24766420  
-0.59460904 -0.80401498 0.00006338 503.50291688  
0.00276945 -0.00212698 -0.99999390 420.98042313  
Axis -0.94973950 0.31303701 -0.00164835  
Axis point 0.00000000 279.11230770 210.19397549  
Rotation angle (degrees) 179.93393018  
Shift along axis -0.02111110  
  

> volume #25 color #b2ffb2

> volume #25 color #f7ffb2

> volume #25 color #f8ffb2

> volume #25 color #f9ffb2

> volume #25 color #fbffb2

> volume #25 color #ffffb2

> volume #25 color #ffffb1

> volume #25 color #ffffab

> volume #25 color #ffff77

> volume #25 color #ffff3c

> volume #25 color #ffff09

> volume #25 color yellow

Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  

> volume #25 step 1

> volume #25 level 0.008697

> surface dust #25 size 40

> lighting soft

> select clear

> surface dust #10 size 40

> volume #23 color #19ff00fc

> volume #23 color #19ff00

> surface dust #23 size 40

> volume #25 level 0.01016

> volume #25 level 0.008783

> volume #25 level 0.00792

> volume #25 level 0.006712

> surface dust #25 size 40

> surface dust #25 size 80

> volume #25 level 0.006

> volume #25 level 0.007

> volume #25 level 0.008

> select #44

49008 atoms, 49740 bonds, 1 model selected  

> select #37

49008 atoms, 49740 bonds, 1 model selected  

> hide sel cartoons

> volume #25 level 0.008518

> select #34

1640 atoms, 1838 bonds, 1 model selected  

> hide sel atoms

> hide sel cartoons

> surface dust #9 size 80

> volume #25 level 0.009554

> surface dust #25 size 40

Traceback (most recent call last):  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 158, in <lambda>  
lambda *args, ft=self._fill_tree: ft(always_rebuild=True))  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
IndexError: list index out of range  
  
Error processing trigger "new frame":  
IndexError: list index out of range  
  
File
"/private/var/folders/_7/78g_4hlj7_72zms4nq9fj3ph0000gn/T/AppTranslocation/31E1A339-4F85-4972-9B5C-D8940F23CD60/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 203, in _fill_tree  
parent = item_stack[0] if len(item_stack) == 1 else item_stack[len_id-1]  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-12.10.12
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.

Change History (2)

comment:1 by Eric Pettersen, 5 years ago

Cc: Tom Goddard added
Component: Unassigned → General Controls
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Model panel, list index out of range, restoring session

comment:2 by Eric Pettersen, 5 years ago

Resolution: → duplicate
Status: accepted → closed

Exact duplicate of #3279 (same user/session)

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