Opened 5 years ago

Closed 5 years ago

#3177 closed defect (duplicate)

Save options widgets deleted

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-8.1-6.3.9600
ChimeraX Version: 0.92 (2020-03-08)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 0.92 (2020-03-08)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open F:/2020/project/LRG/refine/LRG_refine_28.pdb

Summary of feedback from opening F:/2020/project/LRG/refine/LRG_refine_28.pdb  
---  
warnings | Ignored bad PDB record found on line 108  
LINKR ND2 ASN A 234 C3 NAG A 320 NAG-ASN  
  
Ignored bad PDB record found on line 109  
LINKR C1 NAG A 315 ND2 ASN A 151 NAG-ASN  
  
Ignored bad PDB record found on line 110  
LINKR C1 NAG A 318 ND2 ASN A 44 NAG-ASN  
  
Ignored bad PDB record found on line 111  
LINKR C1 NAG A 319 ND2 ASN A 290 NAG-ASN  
  
Ignored bad PDB record found on line 112  
LINKR C1 NAG A 320 ND2 ASN A 234 NAG-ASN  
  
1 messages similar to the above omitted  
  
LRG_refine_28.pdb title:  
\--- [more info...]  
  
Chain information for LRG_refine_28.pdb #1  
---  
Chain | Description  
A | No description available  
  
Non-standard residues in LRG_refine_28.pdb #1  
---  
NAG — (NAG)  
SO4 — (SO4)  
  

> set bgColor white

> show surfaces

> lighting flat

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting full

> lighting soft

> lighting simple

> lighting soft

> graphics silhouettes false

> graphics silhouettes true

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting flat

> lighting soft

> lighting full

> lighting flat

> lighting flat

> lighting flat

> lighting full

> lighting soft

> volume style surface

No volumes specified  

> volume style surface

No volumes specified  

> open F:/2020/project/LRG/refine/LRG_refine_28.mtz

Unrecognized file suffix '.mtz'  

> volume style mesh

No volumes specified  

> volume style mesh

No volumes specified  

> volume show

No volumes specified  

> volume style surface

No volumes specified  

> volume style surface

No volumes specified  

> show atoms

> show atoms

> hide surfaces

> volume style surface

No volumes specified  

> volume style surface

No volumes specified  

> open F:/2020/project/LRG/lrg_fitmap1

Missing filename suffix F:/2020/project/LRG/lrg_fitmap1  

> open F:/2020/project/LRG/chimera_volumeric.py

ChimeraX cannot open a regular Chimera session.  
An exporter from Chimera to ChimeraX is being worked on but is not ready at
this time.  

> open F:/2020/project/LRG/lrg1_chimera.map

Opened lrg1_chimera.map, grid size 57,57,49, pixel 0.851,0.851,0.862, shown at
level 0.0293, step 1, values float32  

> volume style surface

> volume style surface

> close session

> open F:\2020\project\LRG\lrg1_chimera.map

Opened lrg1_chimera.map, grid size 57,57,49, pixel 0.851,0.851,0.862, shown at
level 0.0293, step 1, values float32  

> close session

> open F:/2020/project/LRG/chimera_volumeric.py

ChimeraX cannot open a regular Chimera session.  
An exporter from Chimera to ChimeraX is being worked on but is not ready at
this time.  

> open F:\2020\project\LRG\refine\LRG_refine_28.pdb

Summary of feedback from opening F:\2020\project\LRG\refine\LRG_refine_28.pdb  
---  
warnings | Ignored bad PDB record found on line 108  
LINKR ND2 ASN A 234 C3 NAG A 320 NAG-ASN  
  
Ignored bad PDB record found on line 109  
LINKR C1 NAG A 315 ND2 ASN A 151 NAG-ASN  
  
Ignored bad PDB record found on line 110  
LINKR C1 NAG A 318 ND2 ASN A 44 NAG-ASN  
  
Ignored bad PDB record found on line 111  
LINKR C1 NAG A 319 ND2 ASN A 290 NAG-ASN  
  
Ignored bad PDB record found on line 112  
LINKR C1 NAG A 320 ND2 ASN A 234 NAG-ASN  
  
1 messages similar to the above omitted  
  
LRG_refine_28.pdb title:  
\--- [more info...]  
  
Chain information for LRG_refine_28.pdb #1  
---  
Chain | Description  
A | No description available  
  
Non-standard residues in LRG_refine_28.pdb #1  
---  
NAG — (NAG)  
SO4 — (SO4)  
  

> open F:/2020/project/LRG/refine/LRG_refine_28.mtz

Unrecognized file suffix '.mtz'  

> open F:/2020/project/LRG/lrg1_chimera1.map

Opened lrg1_chimera1.map, grid size 137,137,119, pixel 0.851,0.851,0.862,
shown at level 0.04, step 1, values float32  

> volume #2 level 0.01232

> volume #2 level 0.003625

> volume #2 level 0.03341

> close session

> open F:\2020\project\LRG\refine\LRG_refine_28.pdb

Summary of feedback from opening F:\2020\project\LRG\refine\LRG_refine_28.pdb  
---  
warnings | Ignored bad PDB record found on line 108  
LINKR ND2 ASN A 234 C3 NAG A 320 NAG-ASN  
  
Ignored bad PDB record found on line 109  
LINKR C1 NAG A 315 ND2 ASN A 151 NAG-ASN  
  
Ignored bad PDB record found on line 110  
LINKR C1 NAG A 318 ND2 ASN A 44 NAG-ASN  
  
Ignored bad PDB record found on line 111  
LINKR C1 NAG A 319 ND2 ASN A 290 NAG-ASN  
  
Ignored bad PDB record found on line 112  
LINKR C1 NAG A 320 ND2 ASN A 234 NAG-ASN  
  
1 messages similar to the above omitted  
  
LRG_refine_28.pdb title:  
\--- [more info...]  
  
Chain information for LRG_refine_28.pdb #1  
---  
Chain | Description  
A | No description available  
  
Non-standard residues in LRG_refine_28.pdb #1  
---  
NAG — (NAG)  
SO4 — (SO4)  
  

> open F:/2020/project/LRG/refine/28.map

Opened 28.map, grid size 177,177,149, pixel 0.662,0.662,0.677, shown at level
0.802, step 1, values float32  

> volume #2 level 0.03965

> volume #2 level 0.1477

> volume #2 level 0.1989

> volume #2 level 0.1875

> hide atoms

> hide atoms

> show atoms

> volume #2 level 0.3923

> volume #2 level 0.09084

> volume #2 level 0.095

> volume #2

> volume #2 level 0.1

> volume #2 level 0.15

> volume #2 level 0.2

> volume #2 level 0.3

> volume #2 level 0.08

> lighting simple

> volume #2 level 0.3

> volume #2 level 0.7323

> toolshed show "Map Eraser"

> view #3 clip false

> volume erase #2 center 69.384,89.694,117.39 radius 5.4507 outside true

> volume #2 level 0.6761

> volume #2 level 0.02455

> volume #2 level 0.05825

> volume #2 level 0.09757

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

> toolshed show "Map Eraser"

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

> volume #2 level 0.1537

> volume #2 level 0.1144

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

> help help:user/tools/modelpanel.html

> close #4

> volume erase #2 center 75.398,89.397,103.88 radius 2.1974

> volume erase #4 center 75.398,89.397,103.88 radius 2.1974

> volume #2 level 0.6776

> close #4

> volume #2 level 0.5752

> volume #2 level 0.4216

> volume #2 level 0.1884

> volume #2 level 0.1599

> volume #2 level 0.1486

> volume #2 level 0.1486

> volume erase #2 center 68.356,89.263,117.95 radius 6.0649 outside true

> volume #2 level 0.1598

> volume #2 level 0.2216

> volume #2 level 0.8282

> volume #2 level 0.05868

Can only have one displayed volume when erasing  

Can only have one displayed volume when erasing  

> close #4

> volume erase #2 center 39.7,72.159,123.21 radius 8.614 outside true

> close #4

> close

> open F:\2020\project\LRG\refine\LRG_refine_28.pdb

Summary of feedback from opening F:\2020\project\LRG\refine\LRG_refine_28.pdb  
---  
warnings | Ignored bad PDB record found on line 108  
LINKR ND2 ASN A 234 C3 NAG A 320 NAG-ASN  
  
Ignored bad PDB record found on line 109  
LINKR C1 NAG A 315 ND2 ASN A 151 NAG-ASN  
  
Ignored bad PDB record found on line 110  
LINKR C1 NAG A 318 ND2 ASN A 44 NAG-ASN  
  
Ignored bad PDB record found on line 111  
LINKR C1 NAG A 319 ND2 ASN A 290 NAG-ASN  
  
Ignored bad PDB record found on line 112  
LINKR C1 NAG A 320 ND2 ASN A 234 NAG-ASN  
  
1 messages similar to the above omitted  
  
LRG_refine_28.pdb title:  
\--- [more info...]  
  
Chain information for LRG_refine_28.pdb #1  
---  
Chain | Description  
A | No description available  
  
Non-standard residues in LRG_refine_28.pdb #1  
---  
NAG — (NAG)  
SO4 — (SO4)  
  

> open F:/2020/project/LRG/refine/28.map

Opened 28.map, grid size 177,177,149, pixel 0.662,0.662,0.677, shown at level
0.802, step 1, values float32  

> volume #2 level 1.001

> toolshed show "Map Eraser"

> volume #2 level 0.1193

> volume #2 level 0.02258

> volume erase #2 center 55.859,63.696,121.98 radius 45.004 outside true

> close #2

> volume #4 level 0.8189

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 476, in <lambda>  
gw.mouseMoveEvent = lambda e, s=self: s._dispatch_mouse_event(e, "mouse_drag")  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 402, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 109, in mouse_drag  
c = self.settings.sphere_center  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 298, in sphere_center  
return self.sphere_model.scene_position.origin()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 254, in sphere_model  
center, self._radius_value())  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLineEdit has been deleted  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\map_eraser\eraser.py", line 269, in _radius_value  
rt = self._radius_entry.text()  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0
OpenGL renderer: GeForce 710M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 5 years ago

Component: UnassignedInput/Output
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionSave options widgets deleted

comment:2 by pett, 5 years ago

Resolution: duplicate
Status: acceptedclosed
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