Cartoon pick: index is out of bounds

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Linux-3.10.0-1062.12.1.el7.x86_64-x86_64-with-centos-7.7.1908-Core
ChimeraX Version: 0.94 (2020-04-14)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.94.dev202004140658 (2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5_Export.cxs

Log from Sat May 16 16:57:49 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5_Export.cxs

Log from Fri May 15 20:45:46 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig3_assembly_NoseparatePQR.cxs

Log from Fri May 15 15:31:08 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_separatePQR.cxs
> format session

Log from Fri May 15 15:07:31 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_separatePQR.cxs
> format session

Log from Fri May 15 11:17:27 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_separatePQR.cxs
> format session

Log from Fri May 15 10:16:23 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly.cxs
> format session

Log from Thu May 14 21:31:38 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly.cxs

Log from Thu May 14 16:41:14 2020UCSF ChimeraX version: 0.94.dev202004140658
(2020-04-14)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/PDB/FlgEGF0511.pdb

Chain information for FlgEGF0511.pdb #1  
---  
Chain | Description  
A B C D E F G H I J K L M O | No description available  
N | No description available  
P Q | No description available  
R S | No description available  
T | No description available  
U | No description available  
V | No description available  
W X | No description available  
Y | No description available  
a b c d e | No description available  
f | No description available  
g l m n o q r | No description available  
p | No description available  
  

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/PDB/FlgCB0511.pdb

Chain information for FlgCB0511.pdb #2  
---  
Chain | Description  
0 1 2 3 4 | No description available  
5 | No description available  
A B C D E F | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l o p | No description available  
m | No description available  
n | No description available  
q | No description available  
  

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> show cartoons

> hide atoms

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/PDB/FliEPRQcombine0511.pdb

Chain information for FliEPRQcombine0511.pdb #3  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
a | No description available  
b | No description available  
c d e | No description available  
f | No description available  
r s | No description available  
t | No description available  
u | No description available  
v | No description available  
  

> hide atoms

> show cartoons

> color #1/A-Y pink

> color #1/l-r,g light sky blue

> color #1/a-f magenta

> color #2/g-k salmon

> color #2/l-q lime

> color #3/a-f deep sky blue

> color #3/r-v orchid

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color #3/F,E spring green

> color #3/A-D light grey

> undo

> color list

No custom colors.  
248 builtin colors: alice blue

, aliceblue

, antique white

, antiquewhite

, aqua

, aquamarine

, azure

, beige

, bisque

, black

, blanched almond

, blanchedalmond

, blue

, blue violet

, blueviolet

, brown

, burly wood

, burlywood

, cadet blue

, cadetblue

, chartreuse

, chocolate

, coral

, cornflower blue

, cornflowerblue

, cornsilk

, crimson

, cyan

, dark blue

, dark cyan

, dark goldenrod

, dark gray

, dark green

, dark grey

, dark khaki

, dark magenta

, dark olive green

, dark orange

, dark orchid

, dark red

, dark salmon

, dark sea green

, dark seagreen

, dark slate blue

, dark slate gray

, dark slate grey

, dark turquoise

, dark violet

, darkblue

, darkcyan

, darkgoldenrod

, darkgray

, darkgreen

, darkgrey

, darkkhaki

, darkmagenta

, darkolivegreen

, darkorange

, darkorchid

, darkred

, darksalmon

, darkseagreen

, darkslateblue

, darkslategray

, darkslategrey

, darkturquoise

, darkviolet

, deep pink

, deep sky blue

, deep skyblue

, deeppink

, deepskyblue

, dim gray

, dim grey

, dimgray

, dimgrey

, dodger blue

, dodgerblue

, fire brick

, firebrick

, floral white

, floralwhite

, forest green

, forestgreen

, fuchsia

, gainsboro

, ghost white

, ghostwhite

, gold

, goldenrod

, gray

, green

, green yellow

, greenyellow

, grey

, honeydew

, hot pink

, hotpink

, indian red

, indianred

, indigo

, ivory

, khaki

, lavender

, lavender blush

, lavenderblush

, lawn green

, lawngreen

, lemon chiffon

, lemonchiffon

, light blue

, light coral

, light cyan

, light goldenrod yellow

, light gray

, light green

, light grey

, light pink

, light salmon

, light sea green

, light seagreen

, light sky blue

, light skyblue

, light slate gray

, light slate grey

, light steel blue

, light yellow

, lightblue

, lightcoral

, lightcyan

, lightgoldenrodyellow

, lightgray

, lightgreen

, lightgrey

, lightpink

, lightsalmon

, lightseagreen

, lightskyblue

, lightslategray

, lightslategrey

, lightsteelblue

, lightyellow

, lime

, lime green

, limegreen

, linen

, magenta

, maroon

, medium aquamarine

, medium blue

, medium orchid

, medium purple

, medium sea green

, medium seagreen

, medium slate blue

, medium spring green

, medium turquoise

, medium violet red

, mediumaquamarine

, mediumblue

, mediumorchid

, mediumpurple

, mediumseagreen

, mediumslateblue

, mediumspringgreen

, mediumturquoise

, mediumvioletred

, midnight blue

, midnightblue

, mint cream

, mintcream

, misty rose

, mistyrose

, moccasin

, navajo white

, navajowhite

, navy

, old lace

, oldlace

, olive

, olive drab

, olivedrab

, orange

, orange red

, orangered

, orchid

, pale goldenrod

, pale green

, pale turquoise

, pale violet red

, palegoldenrod

, palegreen

, paleturquoise

, palevioletred

, papaya whip

, papayawhip

, peach puff

, peachpuff

, peru

, pink

, plum

, powder blue

, powderblue

, purple

, rebecca purple

, rebeccapurple

, red

, rosy brown

, rosybrown

, royal blue

, royalblue

, saddle brown

, saddlebrown

, salmon

, sandy brown

, sandybrown

, sea green

, seagreen

, seashell

, sienna

, silver

, sky blue

, skyblue

, slate blue

, slate gray

, slate grey

, slateblue

, slategray

, slategrey

, snow

, spring green

, springgreen

, steel blue

, steelblue

, tan

, teal

, thistle

, tomato

, transparent

, turquoise

, violet

, wheat

, white

, white smoke

, whitesmoke

, yellow

, yellow green

, and yellowgreen

.  

> color sel wheat

> color #3/A-D wheat

> color #1/l-r,g

> hide cartoons

> undo

> select #1/l-r,g

14364 atoms, 14516 bonds, 48 pseudobonds, 2 models selected  

> hide sel cartoons

> select clear

> select #2/0-5,A-F

1275 atoms, 1299 bonds, 1 model selected  

> hide sel cartoons

> select clear

> select clear

> toolshed show "Side View"

> view orient

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn y 30

> turn y 30

> turn y 30

> turn y 30

> turn y 30

> turn y 30

> lighting soft

> lighting soft

> hide #1.1 models

> hide #2.1 models

> hide #3.1 models

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting soft

> select #1/A-Y

47971 atoms, 48554 bonds, 20 pseudobonds, 2 models selected  

> color sel light pink

> color sel cyan

> select clear

> undo

> undo

> undo

> undo

> select clear

> show surfaces

> undo

> hide surfaces

> surface #1

> hide surfaces

> select #1/A-Y

47971 atoms, 48554 bonds, 20 pseudobonds, 2 models selected  

> show sel surfaces

> color sel byhetero

> color #1/A-Y pink

> select clear

> show surfaces

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random' or a keyword  

> color #1/a-f magenta

> color #2/g-k salmon

> color #2/l-q lime

> color #3/a-f deep sky blue

> color #3/r-v orchid

> color #3/A-D wheat

> color #3/E,F spring green

> select #1/l-r,g

14364 atoms, 14516 bonds, 48 pseudobonds, 2 models selected  

> hide sel cartoons

> hide sel surfaces

> select clear

> select #2/0-5,A-F

1275 atoms, 1299 bonds, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> select clear

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_simple.cxs

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1.jpg
> width 4000 height 4000 supersample 4

> turn y 30

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_simple.cxs

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_2.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_3.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_4.jpg
> width 4000 height 4000 supersample 4

> hide surfaces

> lighting soft

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_5.jpg
> width 4000 height 4000 supersample 4

> undo

> undo

> undo

> turn x 90

> show surfaces

> select #2/0-5,A-F

1275 atoms, 1299 bonds, 1 model selected  

> hide sel surfaces

> select #1/l-r,g

14364 atoms, 14516 bonds, 48 pseudobonds, 2 models selected  

> hide sel surfaces

> select clear

> select #3/r-v

7954 atoms, 8136 bonds, 12 pseudobonds, 2 models selected  

> color sel green

> select #3/E,F

1293 atoms, 1304 bonds, 2 pseudobonds, 2 models selected  

> color sel green

> select clear

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_simple.cxs

opened ChimeraX session  

> select #3/r-v,A-D,E,F

10447 atoms, 10632 bonds, 22 pseudobonds, 2 models selected  

> hide sel surfaces

> hide sel cartoons

> select clear

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly.cxs

opened ChimeraX session  

> select #3

13547 atoms, 13753 bonds, 22 pseudobonds, 2 models selected  

> show sel surfaces

> select clear

> hide #!3 models

> undo

> undo

> undo

> select #3/r-v,E,F,A-D

10447 atoms, 10632 bonds, 22 pseudobonds, 2 models selected  

> hide sel surfaces

> select clear

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/PDB/FliEPRQcombine0511.pdb

Chain information for FliEPRQcombine0511.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
a | No description available  
b | No description available  
c d e | No description available  
f | No description available  
r s | No description available  
t | No description available  
u | No description available  
v | No description available  
  

> select #4

13547 atoms, 13753 bonds, 22 pseudobonds, 2 models selected  

> hide sel atoms

> show sel cartoons

> select #4/r-v

7954 atoms, 8136 bonds, 12 pseudobonds, 2 models selected  

> color sel orchid

> select #4/E,F

1293 atoms, 1304 bonds, 2 pseudobonds, 2 models selected  

> color sel spring green

> select #4/A-d

4641 atoms, 4659 bonds, 10 pseudobonds, 2 models selected  

> select #4/A-d

4641 atoms, 4659 bonds, 10 pseudobonds, 2 models selected  

> select clear

> select #4/A-d

4641 atoms, 4659 bonds, 10 pseudobonds, 2 models selected  

> select #4/A-D

1200 atoms, 1192 bonds, 8 pseudobonds, 2 models selected  

> color sel wheat

> select clear

> select #4/a-f

3100 atoms, 3121 bonds, 1 model selected  

> hide sel cartoons

> select #4

13547 atoms, 13753 bonds, 22 pseudobonds, 2 models selected  

> show sel surfaces

> select #4/A-D

1200 atoms, 1192 bonds, 8 pseudobonds, 2 models selected  

> color sel wheat

> select #4/E,F

1293 atoms, 1304 bonds, 2 pseudobonds, 2 models selected  

> color sel spring green

> select #4/r-v

7954 atoms, 8136 bonds, 12 pseudobonds, 2 models selected  

> color sel orchid

> select #4/a-f

3100 atoms, 3121 bonds, 1 model selected  

> hide sel surfaces

> hide sel cartoons

> select clear

> move z 30 coordinateSystem #3 models #4

> move z 10 coordinateSystem #3 models #4

> move z -40 coordinateSystem #3 models #4

> toolshed show "Side View"

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1.jpg
> width 4000 height 4000 supersample 4

> move z 30 coordinateSystem #3 models #4

> move z 40 coordinateSystem #3 models #4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-1.jpg
> width 4000 height 4000 supersample 4

> hide #!4 models

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-0.jpg
> width 4000 height 4000 supersample 4

> show #!4 models

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_separatePQR.cxs

opened ChimeraX session  

> select #1/A-Y:1-33,221-260

13803 atoms, 13828 bonds, 1 model selected  

> color sel yellow

> select clear

> toolshed show "Side View"

> select #1/A-Y:1-33,221-260

13803 atoms, 13828 bonds, 1 model selected  

> color sel yellow

> select clear

> select #1/A-Y:1-33,221-260

13803 atoms, 13828 bonds, 1 model selected  

> color sel yellow

> color sel yellow surfaces

> color sel yellow surfaces

Missing "color" keyword's argument  

Missing "color" keyword's argument  

> select clear

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-2.jpg
> width 4000 height 4000 supersample 4

> select #1/A-Y:1-33,221-260

13803 atoms, 13828 bonds, 1 model selected  

> hide sel surfaces

> show sel surfaces

> hide sel surfaces

> show sel surfaces

> select clear

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> hide #4.1 models

> select #1/A-Y:1-33,221-260

13803 atoms, 13828 bonds, 1 model selected  

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color sel yellow All

> select clear

> move z 10 coordinateSystem #3 models #4

> move z 10 coordinateSystem #3 models #4

> move z 10 coordinateSystem #3 models #4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_separatePQR.cxs

> hide #!1 models

> show #!1 models

> lighting full

> lighting full

> lighting full

> lighting soft

> color #1/A-Y:1-33,221-260 yellow surfaces

> color #1/A-Y:1-33,221-260 red surfaces

> color #1/A-Y:1-33,221-260 yellow surfaces

> clip off

> color #1/A-Y:1-33,221-260 yellow surfaces

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-2.jpg
> width 4000 height 4000 supersample 4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-1.jpg
> width 4000 height 4000 supersample 4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_separatePQR.cxs

opened ChimeraX session  

> color #1/A-Y light pink

> color #2/g-k orange

> select clear

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-1-0.jpg
> width 4000 height 4000 supersample 4

> toolshed show "Side View"

> color #1/A-Y:1-33,221-260 yellow

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-1-0.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_4.jpg
> width 4000 height 4000 supersample 4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-2.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> turn x 90

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-3.jpg
> width 4000 height 4000 supersample 4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_separatePQR.cxs

opened ChimeraX session  

> move z -40 coordinateSystem #3 models #4

> move z -10 coordinateSystem #3 models #4

> move z -10 coordinateSystem #3 models #4

> select clear

> move z -10 coordinateSystem #3 models #4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_1-1.jpg
> width 4000 height 4000 supersample 4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig3/Fig3_assembly_NoseparatePQR.cxs

opened ChimeraX session  

> hide #!4 models

> show #!4 models

> select #1

73124 atoms, 74000 bonds, 72 pseudobonds, 2 models selected  

> delete sel

> hide #!2 models

> show #!2 models

> hide #!4 models

Expected an objects specifier or a keyword  

> select #3

13547 atoms, 13753 bonds, 22 pseudobonds, 2 models selected  

> show sel cartoons

> show sel surfaces

> select clear

> select #4

13547 atoms, 13753 bonds, 22 pseudobonds, 2 models selected  

> delete sel

> select #2/g-k

4695 atoms, 4745 bonds, 10 pseudobonds, 2 models selected  

> hide sel surfaces

> hide sel cartoons

> select clear

> view orient

> turn x 90

> turn y 90

> turn y 90

> turn y 30

> toolshed show "Side View"

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-2.jpg
> width 4000 height 4000 supersample 4

> turn y 180

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-4.jpg
> width 4000 height 4000 supersample 4

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-3.jpg
> width 4000 height 4000 supersample 4

> turn y 180

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-1.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-5.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-6.jpg
> width 4000 height 4000 supersample 4

> hide surfaces

> turn x 90

> lighting soft

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-7.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-8.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5-9.jpg
> width 4000 height 4000 supersample 4

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> turn x 90

> show surfaces

> select #2/g-k,A-F,0-5

5970 atoms, 6044 bonds, 10 pseudobonds, 2 models selected  

> hide sel surfaces

> select clear

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5_Export.cxs

> undo

> undo

> undo

> select #2/g-k,A-F,0-5

5970 atoms, 6044 bonds, 10 pseudobonds, 2 models selected  

> show sel surfaces

> hide sel surfaces

> delete sel

> select clear

> hide surfaces

> show cartoons

> show surfaces

> select clear

> turn x 90

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5_Export.cxs

opened ChimeraX session  

> hide surfaces

> cartoon style modeHelix tube

> turn x 90

> turn x 90

> turn x 90

> cartoon style coil width 1.5 thickness 0.3

> cartoon style coil width 1.5 thickness 0.5

> cartoon style coil width 1.5 thickness 1

> select clear

> show #2.1 models

> hide #2.1 models

> save2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/Fig5_Export.cxs

opened ChimeraX session  

> hide #!2 models

> open2
> /home/tanjiaxing/Documents/1-2Flagella/Figures/HBB_PDB_0511/Fig5/PDB/6f2d_FliPQR.pdb

6f2d_FliPQR.pdb title:  
A flipqr complex forms the core of the salmonella type III secretion system
export apparatus. [more info...]  
  
Chain information for 6f2d_FliPQR.pdb #1  
---  
Chain | Description  
A B C D E | flagellar biosynthetic protein flip  
F | flagellar biosynthetic protein flir  
G H I J | flagellar biosynthetic protein fliq  
  

> hide #1#!3 atoms

> show #1#!3 cartoons

> cartoon style modeHelix tube

> cartoon style coil width 1.5 thickness 0.5

> cartoon style coil width 1.5 thickness 1

> select clear

> select #3/a-f

3100 atoms, 3121 bonds, 1 model selected  

> hide sel cartoons

> select clear

> select #1/A-E

7875 atoms, 8060 bonds, 1 model selected  

> color sel orchid

> select #1/F

1986 atoms, 2036 bonds, 1 model selected  

> color sel spring green

> select #1/G-J

2680 atoms, 2724 bonds, 1 model selected  

> color sel wheat

> select clear

> color #1 light grey

> undo

> select clear

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> cartoon style radius 0.5

> cartoon style radius 2

> color #1 cyan

> color #1 yellow

> color list

No custom colors.  
248 builtin colors: alice blue

, aliceblue

, antique white

, antiquewhite

, aqua

, aquamarine

, azure

, beige

, bisque

, black

, blanched almond

, blanchedalmond

, blue

, blue violet

, blueviolet

, brown

, burly wood

, burlywood

, cadet blue

, cadetblue

, chartreuse

, chocolate

, coral

, cornflower blue

, cornflowerblue

, cornsilk

, crimson

, cyan

, dark blue

, dark cyan

, dark goldenrod

, dark gray

, dark green

, dark grey

, dark khaki

, dark magenta

, dark olive green

, dark orange

, dark orchid

, dark red

, dark salmon

, dark sea green

, dark seagreen

, dark slate blue

, dark slate gray

, dark slate grey

, dark turquoise

, dark violet

, darkblue

, darkcyan

, darkgoldenrod

, darkgray

, darkgreen

, darkgrey

, darkkhaki

, darkmagenta

, darkolivegreen

, darkorange

, darkorchid

, darkred

, darksalmon

, darkseagreen

, darkslateblue

, darkslategray

, darkslategrey

, darkturquoise

, darkviolet

, deep pink

, deep sky blue

, deep skyblue

, deeppink

, deepskyblue

, dim gray

, dim grey

, dimgray

, dimgrey

, dodger blue

, dodgerblue

, fire brick

, firebrick

, floral white

, floralwhite

, forest green

, forestgreen

, fuchsia

, gainsboro

, ghost white

, ghostwhite

, gold

, goldenrod

, gray

, green

, green yellow

, greenyellow

, grey

, honeydew

, hot pink

, hotpink

, indian red

, indianred

, indigo

, ivory

, khaki

, lavender

, lavender blush

, lavenderblush

, lawn green

, lawngreen

, lemon chiffon

, lemonchiffon

, light blue

, light coral

, light cyan

, light goldenrod yellow

, light gray

, light green

, light grey

, light pink

, light salmon

, light sea green

, light seagreen

, light sky blue

, light skyblue

, light slate gray

, light slate grey

, light steel blue

, light yellow

, lightblue

, lightcoral

, lightcyan

, lightgoldenrodyellow

, lightgray

, lightgreen

, lightgrey

, lightpink

, lightsalmon

, lightseagreen

, lightskyblue

, lightslategray

, lightslategrey

, lightsteelblue

, lightyellow

, lime

, lime green

, limegreen

, linen

, magenta

, maroon

, medium aquamarine

, medium blue

, medium orchid

, medium purple

, medium sea green

, medium seagreen

, medium slate blue

, medium spring green

, medium turquoise

, medium violet red

, mediumaquamarine

, mediumblue

, mediumorchid

, mediumpurple

, mediumseagreen

, mediumslateblue

, mediumspringgreen

, mediumturquoise

, mediumvioletred

, midnight blue

, midnightblue

, mint cream

, mintcream

, misty rose

, mistyrose

, moccasin

, navajo white

, navajowhite

, navy

, old lace

, oldlace

, olive

, olive drab

, olivedrab

, orange

, orange red

, orangered

, orchid

, pale goldenrod

, pale green

, pale turquoise

, pale violet red

, palegoldenrod

, palegreen

, paleturquoise

, palevioletred

, papaya whip

, papayawhip

, peach puff

, peachpuff

, peru

, pink

, plum

, powder blue

, powderblue

, purple

, rebecca purple

, rebeccapurple

, red

, rosy brown

, rosybrown

, royal blue

, royalblue

, saddle brown

, saddlebrown

, salmon

, sandy brown

, sandybrown

, sea green

, seagreen

, seashell

, sienna

, silver

, sky blue

, skyblue

, slate blue

, slate gray

, slate grey

, slateblue

, slategray

, slategrey

, snow

, spring green

, springgreen

, steel blue

, steelblue

, tan

, teal

, thistle

, tomato

, transparent

, turquoise

, violet

, wheat

, white

, white smoke

, whitesmoke

, yellow

, yellow green

, and yellowgreen

.  

> color #2 turquoise

> color #3 turquoise

> select clear

> preset cartoons/nucleotides licorice/ovals

Changed 31147 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh default arrows f x round width 1 thick 1
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides tube/slab shape ellipsoid

  

> preset cartoons/nucleotides ribbons/slabs

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> lighting soft

> select #3/a-f

3100 atoms, 3121 bonds, 1 model selected  

> hide sel cartoons

> select clear

Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1554 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
IndexError: index 1603 is out of bounds for axis 0 with size 1486  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/core/updateloop.py", line 139, in _redraw_timer_callback  
self.session.ui.mouse_modes.mouse_pause_tracking()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 362, in
mouse_pause_tracking  
self._mouse_pause()  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 466, in _mouse_pause  
m.pause(self._mouse_pause_position)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/std_modes.py", line 623, in pause  
p = picked_object(x, y, self.view)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 613, in picked_object  
exclude = exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/mouse_modes/mousemodes.py", line 617, in
picked_object_on_segment  
p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/view.py", line 788, in first_intercept_on_segment  
p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 986, in first_intercept  
p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/graphics/drawing.py", line 1002, in first_intercept_children  
p = d.first_intercept(cxyz1, cxyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 586, in first_intercept  
ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2, exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/structure.py", line 619, in _position_intercepts  
p = d.first_intercept(xyz1, xyz2, exclude=exclude)  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
IndexError: index 1772 is out of bounds for axis 0 with size 1629  
  
IndexError: index 1772 is out of bounds for axis 0 with size 1629  
  
File "/opt/UCSF/ChimeraX-daily/lib/python3.7/site-
packages/chimerax/atomic/ribbon.py", line 675, in first_intercept  
r = self._residues[tranges[n-1][0]]  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 418.43
OpenGL renderer: Quadro P4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: C246-WU4
OS: CentOS Linux 7 Core
Architecture: 64bit ELF
CPU: 8 Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
Cache Size: 12288 KB
Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104GL [Quadro P4000] [10de:1bb1] (rev a1)
	Subsystem: NVIDIA Corporation Device [10de:11a3]
	Kernel driver in use: nvidia

[Tom Goddard]

Fixed a month ago.