Opened 6 years ago
Closed 6 years ago
#2700 closed defect (fixed)
Can't open .pyc file
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-3.10.0-514.21.1.el7.x86_64-x86_64-with-centos-7.3.1611-Core
ChimeraX Version: 0.9 (2019-06-06)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 0.9 (2019-06-06)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
/data/wangchy/linux/Desktop/MICUs_Paper/Model_in_maps_ver2/post459_first_6_frames.mrc
Opened post459_first_6_frames.mrc, grid size 300,300,300, pixel 1.06, shown at
level -2.36e-06, step 2, values float32
> volume #1 orthoplanes xyz positionPlanes 149,149,149
> volume #1 orthoplanes xyz positionPlanes 149,149,149
> volume #1 region 126,0,0,126,299,299
> volume #1 region 144,0,0,144,299,299
> show #!1.1 models
> hide #!1.2 models
> volume #1 region 157,0,0,157,299,299
> select #1.1
2 models selected
> hide #!1.1 models
> show #!1.1 models
> close #1
> open
/data/wangchy/linux/Desktop/MICUs_Paper/Model_in_maps_ver2/post459_first_6_frames.mrc
Opened post459_first_6_frames.mrc, grid size 300,300,300, pixel 1.06, shown at
level -2.36e-06, step 2, values float32
> volume #1 region 0,0,209,299,299,209
> volume #1 region 0,0,208,299,299,208
> show #!1.1 models
> hide #!1.2 models
> show #!1.2 models
> select #1
3 models selected
> select #1
3 models selected
> volume #1 region 0,0,22,299,299,22
> lighting simple
> close #1
> open
/data/wangchy/linux/Desktop/MICUs_Paper/Model_in_maps/maps/WCY95B_relion_job037_postprocess76_B50_aligned.mrc
Opened WCY95B_relion_job037_postprocess76_B50_aligned.mrc, grid size
304,304,304, pixel 1.09, shown at level 0.00549, step 2, values float32
> volume #1 region 174,0,0,174,303,303
> volume #1 region 215,0,0,215,303,303
> volume #1 region 148,0,0,148,303,303
> volume #1 region 152,0,0,152,303,303
> volume #1 region 160,0,0,160,303,303
> help help:user
> volume #1 region 151,0,0,151,303,303
> show #!1.1 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.1 models
> show #!1.1 models
> close #1.2
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!1.1 models
> show #!1.1 models
> volume #1 region 145,0,0,145,303,303
> volume #1 region 126,0,0,126,303,303
> select #1
2 models selected
> ~select #1.1
1 model selected
> save /data/wangchy/linux/Desktop/image1.png supersample 3
> close #1
> set bgColor #ffffff
> open /ssd_polar/wangchy/WCY95B/Figures/Figure1/color2_ver6.py
ChimeraX cannot open a regular Chimera session.
An exporter from Chimera to ChimeraX is being worked on but is not ready at
this time.
> open /ssd_polar/wangchy/WCY95B/Figures/Figure1/color2_ver6.pyc
Traceback (most recent call last):
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/toolbar/tool.py", line 141, in <lambda>
lambda e, what=what, self=self: self.handle_scheme(what),
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/toolbar/tool.py", line 96, in handle_scheme
run(self.session, f'{value}')
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/commands/run.py", line 31, in run
results = command.run(text, log=log)
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2632, in run
result = ci.function(session, **kw_args)
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/commands/open.py", line 64, in open
path_models = session.models.open(paths, format=format, name=name, **kw)
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/models.py", line 604, in open
session, filenames, format=format, name=name, **kw)
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/io.py", line 477, in open_multiple_data
models, status = open_data(session, fspec, format=format, name=name, **kw)
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/io.py", line 431, in open_data
models, status = open_func(*args, **kw)
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/scripting.py", line 57, in open_python_script
code = compile(data, file_name, 'exec')
ValueError: source code string cannot contain null bytes
ValueError: source code string cannot contain null bytes
File "/programs/x86_64-linux/chimerax/0.9/lib/python3.7/site-
packages/chimerax/core/scripting.py", line 57, in open_python_script
code = compile(data, file_name, 'exec')
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 375.66
OpenGL renderer: Quadro M2000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Can't open .pyc file |
comment:2 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
pyc files from different versions of Python are rejected with a "Python code was compiled for a different version of Python" user error. pyc files from the same version of Python execute normally.
Note:
See TracTickets
for help on using tickets.
After failing to open a Chimera1 .py file, this user tried to open the corresponding .pyc. ChimeraX should either disallow opening .pyc files, or process them correctly, not throw the error shown.