![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 5 years ago
#3181 closed defect (can't reproduce)
Crash restoring Structure
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.4.0-x86_64-i386-64bit
ChimeraX Version: 0.93 (2020-04-03)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [4292]
Path: /Applications/ChimeraX-0.93.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.93.0 (0.93.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [4292]
User ID: 501
Date/Time: 2020-05-10 21:28:45.770 -0700
OS Version: Mac OS X 10.15.4 (19E287)
Report Version: 12
Anonymous UUID: E06A867F-9BB6-E219-32B1-6203CEC63805
Sleep/Wake UUID: 30F1A182-04C2-4FD4-80BF-20663B30C13F
Time Awake Since Boot: 560000 seconds
Time Since Wake: 43000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000000012843d000
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x12843d000:
VM_ALLOCATE 000000012843c000-000000012843d000 [ 4K] r--/r-- SM=PRV
-->
MALLOC_LARGE 000000012843f000-0000000128455000 [ 88K] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6a16733a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6a223e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6a07e93e raise + 26
3 libsystem_platform.dylib 0x00007fff6a2185fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libatomstruct.dylib 0x0000000125c20e13 atomstruct::Structure::session_restore(int, _object*, _object*, _object*) + 2947
6 libmolc.dylib 0x0000000125b5786b structure_session_restore + 11
7 _ctypes.cpython-37m-darwin.so 0x00000001134a7da7 ffi_call_unix64 + 79
8 _ctypes.cpython-37m-darwin.so 0x00000001134a8635 ffi_call + 901
9 _ctypes.cpython-37m-darwin.so 0x00000001134a2ee4 _ctypes_callproc + 804
10 _ctypes.cpython-37m-darwin.so 0x000000011349c5ac PyCFuncPtr_call + 1196
11 org.python.python 0x000000010dbff0af _PyObject_FastCallKeywords + 575
12 org.python.python 0x000000010dcd436d call_function + 765
13 org.python.python 0x000000010dcd104e _PyEval_EvalFrameDefault + 26718
14 org.python.python 0x000000010dbff731 function_code_fastcall + 177
15 org.python.python 0x000000010dcd4374 call_function + 772
16 org.python.python 0x000000010dcd0fb7 _PyEval_EvalFrameDefault + 26567
17 org.python.python 0x000000010dbff731 function_code_fastcall + 177
18 org.python.python 0x000000010dcd4374 call_function + 772
19 org.python.python 0x000000010dcd0fb7 _PyEval_EvalFrameDefault + 26567
20 org.python.python 0x000000010dbff731 function_code_fastcall + 177
21 org.python.python 0x000000010dcd4374 call_function + 772
22 org.python.python 0x000000010dcd0fb7 _PyEval_EvalFrameDefault + 26567
23 org.python.python 0x000000010dbff731 function_code_fastcall + 177
24 org.python.python 0x000000010dcd4374 call_function + 772
25 org.python.python 0x000000010dcd0fb7 _PyEval_EvalFrameDefault + 26567
26 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
27 org.python.python 0x000000010dbff249 _PyFunction_FastCallKeywords + 217
28 org.python.python 0x000000010dcd4374 call_function + 772
29 org.python.python 0x000000010dccad64 _PyEval_EvalFrameDefault + 1396
30 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
31 org.python.python 0x000000010dbfed47 _PyFunction_FastCallDict + 455
32 org.python.python 0x000000010dcd11da _PyEval_EvalFrameDefault + 27114
33 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
34 org.python.python 0x000000010dbfed47 _PyFunction_FastCallDict + 455
35 org.python.python 0x000000010dcd11da _PyEval_EvalFrameDefault + 27114
36 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
37 org.python.python 0x000000010dbfed47 _PyFunction_FastCallDict + 455
38 org.python.python 0x000000010dcd11da _PyEval_EvalFrameDefault + 27114
39 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
40 org.python.python 0x000000010dbfed47 _PyFunction_FastCallDict + 455
41 org.python.python 0x000000010dc00253 _PyObject_Call_Prepend + 131
42 org.python.python 0x000000010dbff3a8 PyObject_Call + 136
43 org.python.python 0x000000010dcd11da _PyEval_EvalFrameDefault + 27114
44 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
45 org.python.python 0x000000010dbfed47 _PyFunction_FastCallDict + 455
46 org.python.python 0x000000010dcd11da _PyEval_EvalFrameDefault + 27114
47 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
48 org.python.python 0x000000010dbff249 _PyFunction_FastCallKeywords + 217
49 org.python.python 0x000000010dcd4374 call_function + 772
50 org.python.python 0x000000010dccad64 _PyEval_EvalFrameDefault + 1396
51 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
52 org.python.python 0x000000010dbff249 _PyFunction_FastCallKeywords + 217
53 org.python.python 0x000000010dcd4374 call_function + 772
54 org.python.python 0x000000010dcd104e _PyEval_EvalFrameDefault + 26718
55 org.python.python 0x000000010dbff731 function_code_fastcall + 177
56 org.python.python 0x000000010dcd4374 call_function + 772
57 org.python.python 0x000000010dcd104e _PyEval_EvalFrameDefault + 26718
58 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
59 org.python.python 0x000000010dbfed47 _PyFunction_FastCallDict + 455
60 org.python.python 0x000000010dcd11da _PyEval_EvalFrameDefault + 27114
61 org.python.python 0x000000010dbff731 function_code_fastcall + 177
62 org.python.python 0x000000010dc00253 _PyObject_Call_Prepend + 131
63 org.python.python 0x000000010dbff3a8 PyObject_Call + 136
64 sip.so 0x00000001149bcf7a call_method + 76
65 sip.so 0x00000001149b8d07 sip_api_call_procedure_method + 152
66 QtWidgets.so 0x0000000116e54b67 sipQMainWindow::customEvent(QEvent*) + 103
67 QtCore 0x0000000118053d0f QObject::event(QEvent*) + 127
68 QtWidgets 0x000000011737d56a QWidget::event(QEvent*) + 4826
69 QtWidgets 0x000000011748dc45 QMainWindow::event(QEvent*) + 277
70 QtWidgets.so 0x0000000116e54e70 sipQMainWindow::event(QEvent*) + 192
71 QtWidgets 0x000000011734070d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
72 QtWidgets 0x0000000117341b12 QApplication::notify(QObject*, QEvent*) + 594
73 QtWidgets.so 0x0000000116f003ca sipQApplication::notify(QObject*, QEvent*) + 234
74 QtCore 0x000000011802a564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
75 QtCore 0x000000011802b79e QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 878
76 libqcocoa.dylib 0x0000000121b5bd39 0x121b26000 + 220473
77 libqcocoa.dylib 0x0000000121b5c4a8 0x121b26000 + 222376
78 com.apple.CoreFoundation 0x00007fff300d8f12 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
79 com.apple.CoreFoundation 0x00007fff300d8eb1 __CFRunLoopDoSource0 + 103
80 com.apple.CoreFoundation 0x00007fff300d8ccb __CFRunLoopDoSources0 + 209
81 com.apple.CoreFoundation 0x00007fff300d79fa __CFRunLoopRun + 927
82 com.apple.CoreFoundation 0x00007fff300d6ffe CFRunLoopRunSpecific + 462
83 com.apple.HIToolbox 0x00007fff2ed0aabd RunCurrentEventLoopInMode + 292
84 com.apple.HIToolbox 0x00007fff2ed0a6f4 ReceiveNextEventCommon + 359
85 com.apple.HIToolbox 0x00007fff2ed0a579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
86 com.apple.AppKit 0x00007fff2d355c99 _DPSNextEvent + 883
87 com.apple.AppKit 0x00007fff2d3544e0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
88 com.apple.AppKit 0x00007fff2d3461ee -[NSApplication run] + 658
89 libqcocoa.dylib 0x0000000121b5b223 0x121b26000 + 217635
90 QtCore 0x0000000118025b7f QEventLoop::exec(QFlags) + 431
91 QtCore 0x000000011802ab72 QCoreApplication::exec() + 130
92 QtWidgets.so 0x0000000116fef7d2 meth_QApplication_exec_(_object*, _object*) + 82
93 org.python.python 0x000000010dbffd62 _PyMethodDef_RawFastCallKeywords + 226
94 org.python.python 0x000000010dbff289 _PyCFunction_FastCallKeywords + 41
95 org.python.python 0x000000010dcd4300 call_function + 656
96 org.python.python 0x000000010dcd0fb7 _PyEval_EvalFrameDefault + 26567
97 org.python.python 0x000000010dbff731 function_code_fastcall + 177
98 org.python.python 0x000000010dcd4374 call_function + 772
99 org.python.python 0x000000010dcd0fb7 _PyEval_EvalFrameDefault + 26567
100 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
101 org.python.python 0x000000010dbff249 _PyFunction_FastCallKeywords + 217
102 org.python.python 0x000000010dcd4374 call_function + 772
103 org.python.python 0x000000010dcd104e _PyEval_EvalFrameDefault + 26718
104 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
105 org.python.python 0x000000010dcca750 PyEval_EvalCode + 48
106 org.python.python 0x000000010dcc7ce7 builtin_exec + 583
107 org.python.python 0x000000010dbfff15 _PyMethodDef_RawFastCallKeywords + 661
108 org.python.python 0x000000010dbff289 _PyCFunction_FastCallKeywords + 41
109 org.python.python 0x000000010dcd4300 call_function + 656
110 org.python.python 0x000000010dcd104e _PyEval_EvalFrameDefault + 26718
111 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
112 org.python.python 0x000000010dbff249 _PyFunction_FastCallKeywords + 217
113 org.python.python 0x000000010dcd4374 call_function + 772
114 org.python.python 0x000000010dcd104e _PyEval_EvalFrameDefault + 26718
115 org.python.python 0x000000010dcd51cc _PyEval_EvalCodeWithName + 3276
116 org.python.python 0x000000010dbfed47 _PyFunction_FastCallDict + 455
117 org.python.python 0x000000010dd2f293 pymain_run_module + 147
118 org.python.python 0x000000010dd2e37c pymain_main + 5900
119 org.python.python 0x000000010dd2cc63 Py_Main + 51
120 edu.ucsf.cgl.ChimeraX 0x000000010dbcfdc8 main + 120
121 libdyld.dylib 0x00007fff6a01fcc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6a163882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6a224425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010f6b4c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 2:
0 libsystem_pthread.dylib 0x00007fff6a21fb68 start_wqthread + 0
Thread 3:
0 libsystem_pthread.dylib 0x00007fff6a21fb68 start_wqthread + 0
Thread 4:: Dispatch queue: com.apple.root.user-interactive-qos
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 com.apple.QuartzCore 0x00007fff3bbb5e55 CA::CA_BLOCKED_WAITING_FOR_CLIENT_FENCES(unsigned int, unsigned long) + 170
3 com.apple.QuartzCore 0x00007fff3bb97d3a CA::Context::commit_transaction(CA::Transaction*, double) + 1906
4 com.apple.QuartzCore 0x00007fff3bb96304 CA::Transaction::commit() + 644
5 com.apple.AppKit 0x00007fff2d3adfe4 NSPerformVisuallyAtomicChange + 154
6 com.apple.AppKit 0x00007fff2d5fcfd1 -[_NSWindowTransformAnimation _stopAnimation:withDisplayLink:] + 110
7 com.apple.AppKit 0x00007fff2d55aa94 -[NSScreenDisplayLink _fire] + 180
8 com.apple.AppKit 0x00007fff2dca7d62 ___NSRunLoopTimerCreateWithHandler_block_invoke + 34
9 com.apple.CoreFoundation 0x00007fff300f39b9 __CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ + 20
10 com.apple.CoreFoundation 0x00007fff300f351f __CFRunLoopDoTimer + 859
11 com.apple.CoreFoundation 0x00007fff300f3007 __CFRunLoopDoTimers + 322
12 com.apple.CoreFoundation 0x00007fff300d7daa __CFRunLoopRun + 1871
13 com.apple.CoreFoundation 0x00007fff300d6ffe CFRunLoopRunSpecific + 462
14 com.apple.Foundation 0x00007fff3276b2a8 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 212
15 com.apple.AppKit 0x00007fff2d5fcda0 -[NSAnimation(NSInternal) _runBlocking] + 344
16 com.apple.AppKit 0x00007fff2d5fca7d __42-[NSAnimation(NSInternal) _runInNewThread]_block_invoke + 97
17 libdispatch.dylib 0x00007fff69fc56c4 _dispatch_call_block_and_release + 12
18 libdispatch.dylib 0x00007fff69fc6658 _dispatch_client_callout + 8
19 libdispatch.dylib 0x00007fff69fd4aa8 _dispatch_root_queue_drain + 663
20 libdispatch.dylib 0x00007fff69fd5097 _dispatch_worker_thread2 + 92
21 libsystem_pthread.dylib 0x00007fff6a2209f7 _pthread_wqthread + 220
22 libsystem_pthread.dylib 0x00007fff6a21fb77 start_wqthread + 15
Thread 5:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff300d90b5 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff300d7b82 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff300d6ffe CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2d4f75b4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 6:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2c7f 0x11a527000 + 35306623
4 QtWebEngineCore 0x000000011c686aad 0x11a527000 + 34994861
5 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
6 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 7:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff6a165766 kevent + 10
1 QtWebEngineCore 0x000000011c9943f9 0x11a527000 + 38196217
2 QtWebEngineCore 0x000000011c99170d 0x11a527000 + 38184717
3 QtWebEngineCore 0x000000011c74872c 0x11a527000 + 35788588
4 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
5 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
6 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
7 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 8:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff6a165766 kevent + 10
1 QtWebEngineCore 0x000000011c9943f9 0x11a527000 + 38196217
2 QtWebEngineCore 0x000000011c99170d 0x11a527000 + 38184717
3 QtWebEngineCore 0x000000011c748714 0x11a527000 + 35788564
4 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
5 QtWebEngineCore 0x000000011c6f14c4 0x11a527000 + 35431620
6 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 9:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eb0ab 0x11a527000 + 35405995
6 QtWebEngineCore 0x000000011c6ead14 0x11a527000 + 35405076
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 10:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eb0ab 0x11a527000 + 35405995
6 QtWebEngineCore 0x000000011c6ead14 0x11a527000 + 35405076
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 11:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eb0ab 0x11a527000 + 35405995
6 QtWebEngineCore 0x000000011c6ead14 0x11a527000 + 35405076
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 12:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eae0f 0x11a527000 + 35405327
6 QtWebEngineCore 0x000000011c6ead14 0x11a527000 + 35405076
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 13:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eae0f 0x11a527000 + 35405327
6 QtWebEngineCore 0x000000011c6eac84 0x11a527000 + 35404932
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 14:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eae0f 0x11a527000 + 35405327
6 QtWebEngineCore 0x000000011c6eac84 0x11a527000 + 35404932
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 15:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6a165766 kevent + 10
1 QtWebEngineCore 0x000000011c9943f9 0x11a527000 + 38196217
2 QtWebEngineCore 0x000000011c99170d 0x11a527000 + 38184717
3 QtWebEngineCore 0x000000011c748714 0x11a527000 + 35788564
4 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
5 QtWebEngineCore 0x000000011c015a74 0x11a527000 + 28240500
6 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 16:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2c7f 0x11a527000 + 35306623
4 QtWebEngineCore 0x000000011c6ea76a 0x11a527000 + 35403626
5 QtWebEngineCore 0x000000011c6eae0f 0x11a527000 + 35405327
6 QtWebEngineCore 0x000000011c6eacb4 0x11a527000 + 35404980
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 17:: CompositorTileWorker1/58371
0 libsystem_kernel.dylib 0x00007fff6a163882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6a224425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000011c7409f8 0x11a527000 + 35756536
3 QtWebEngineCore 0x000000011d6c8fe8 0x11a527000 + 52043752
4 QtWebEngineCore 0x000000011c7010e4 0x11a527000 + 35496164
5 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
6 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 18:: AudioThread
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2c7f 0x11a527000 + 35306623
4 QtWebEngineCore 0x000000011c686aad 0x11a527000 + 34994861
5 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
6 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 19:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c686aa2 0x11a527000 + 34994850
4 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
5 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
6 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
7 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 20:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6a165766 kevent + 10
1 QtWebEngineCore 0x000000011c9943f9 0x11a527000 + 38196217
2 QtWebEngineCore 0x000000011c99170d 0x11a527000 + 38184717
3 QtWebEngineCore 0x000000011c74872c 0x11a527000 + 35788588
4 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
5 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
6 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
7 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2c7f 0x11a527000 + 35306623
4 QtWebEngineCore 0x000000011c686aad 0x11a527000 + 34994861
5 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
6 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 22:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2c7f 0x11a527000 + 35306623
4 QtWebEngineCore 0x000000011c6ea76a 0x11a527000 + 35403626
5 QtWebEngineCore 0x000000011c6eb0ab 0x11a527000 + 35405995
6 QtWebEngineCore 0x000000011c6ead74 0x11a527000 + 35405172
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 23:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2c7f 0x11a527000 + 35306623
4 QtWebEngineCore 0x000000011c686aad 0x11a527000 + 34994861
5 QtWebEngineCore 0x000000011c6afad5 0x11a527000 + 35162837
6 QtWebEngineCore 0x000000011c70240c 0x11a527000 + 35501068
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 24:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eb0ab 0x11a527000 + 35405995
6 QtWebEngineCore 0x000000011c6ead14 0x11a527000 + 35405076
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 25:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6a160dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6a161170 mach_msg + 60
2 QtWebEngineCore 0x000000011c6d2d7d 0x11a527000 + 35306877
3 QtWebEngineCore 0x000000011c6d2e71 0x11a527000 + 35307121
4 QtWebEngineCore 0x000000011c6ea778 0x11a527000 + 35403640
5 QtWebEngineCore 0x000000011c6eae0f 0x11a527000 + 35405327
6 QtWebEngineCore 0x000000011c6ead14 0x11a527000 + 35405076
7 QtWebEngineCore 0x000000011c742167 0x11a527000 + 35762535
8 libsystem_pthread.dylib 0x00007fff6a224109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6a21fb8b thread_start + 15
Thread 26:
0 libsystem_pthread.dylib 0x00007fff6a21fb68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000114d82dc0 rcx: 0x000000010e07fa58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010e07fa80 rsp: 0x000000010e07fa58
r8: 0x000000010e07ff48 r9: 0xe6bde54f90e8de63 r10: 0x0000000114d82dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007ffee202ab68 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6a16733a rfl: 0x0000000000000246 cr2: 0x000000010de39fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x10ea50000 - 0x10ea8eff3 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-0.93.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
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0x7fff68eab000 - 0x7fff68eaffff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff68eb2000 - 0x7fff68ee8ff7 libpcap.A.dylib (89.100.1) /usr/lib/libpcap.A.dylib
0x7fff68f28000 - 0x7fff68f36ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff68f6c000 - 0x7fff68f84fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff68f86000 - 0x7fff68fcaff7 libsandbox.1.dylib (1217.101.2) /usr/lib/libsandbox.1.dylib
0x7fff68fde000 - 0x7fff68fdfff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff68fe0000 - 0x7fff691caff7 libsqlite3.dylib (308.4) /usr/lib/libsqlite3.dylib
0x7fff693c0000 - 0x7fff6941aff8 libusrtcp.dylib (1880.100.30) /usr/lib/libusrtcp.dylib
0x7fff6941b000 - 0x7fff6941effb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff6941f000 - 0x7fff6942cff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff69432000 - 0x7fff69514ff7 libxml2.2.dylib (33.3) /usr/lib/libxml2.2.dylib
0x7fff69518000 - 0x7fff69540fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff69541000 - 0x7fff69553ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff69e01000 - 0x7fff69e06ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff69e07000 - 0x7fff69e12fff libcommonCrypto.dylib (60165) /usr/lib/system/libcommonCrypto.dylib
0x7fff69e13000 - 0x7fff69e1afff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff69e1b000 - 0x7fff69e24ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff69e25000 - 0x7fff69eb7fe3 libcorecrypto.dylib (866.100.30) /usr/lib/system/libcorecrypto.dylib
0x7fff69fc4000 - 0x7fff6a004ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6a005000 - 0x7fff6a03bfff libdyld.dylib (750.5) /usr/lib/system/libdyld.dylib
0x7fff6a03c000 - 0x7fff6a03cffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6a03d000 - 0x7fff6a049ff3 libkxld.dylib (6153.101.6) /usr/lib/system/libkxld.dylib
0x7fff6a04a000 - 0x7fff6a04aff7 liblaunch.dylib (1738.100.39) /usr/lib/system/liblaunch.dylib
0x7fff6a04b000 - 0x7fff6a050ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6a051000 - 0x7fff6a053ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6a054000 - 0x7fff6a055ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6a056000 - 0x7fff6a06dff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff6a06e000 - 0x7fff6a06eff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6a06f000 - 0x7fff6a0f6fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff6a0f7000 - 0x7fff6a0faffb libsystem_configuration.dylib (1061.101.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff6a0fb000 - 0x7fff6a0fefff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6a0ff000 - 0x7fff6a107fff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff6a108000 - 0x7fff6a10ffff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6a110000 - 0x7fff6a111ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6a112000 - 0x7fff6a15fff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6a160000 - 0x7fff6a18cff7 libsystem_kernel.dylib (6153.101.6) /usr/lib/system/libsystem_kernel.dylib
0x7fff6a18d000 - 0x7fff6a1d4fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6a1d5000 - 0x7fff6a1fcfff libsystem_malloc.dylib (283.100.5) /usr/lib/system/libsystem_malloc.dylib
0x7fff6a1fd000 - 0x7fff6a20affb libsystem_networkextension.dylib (1095.100.29) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6a20b000 - 0x7fff6a214ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6a215000 - 0x7fff6a21dfef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6a21e000 - 0x7fff6a228fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6a229000 - 0x7fff6a22dff3 libsystem_sandbox.dylib (1217.101.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6a22e000 - 0x7fff6a230fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6a231000 - 0x7fff6a238ffb libsystem_symptoms.dylib (1238.100.26) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6a239000 - 0x7fff6a24fff2 libsystem_trace.dylib (1147.100.8) /usr/lib/system/libsystem_trace.dylib
0x7fff6a251000 - 0x7fff6a256ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6a257000 - 0x7fff6a28cffe libxpc.dylib (1738.100.39) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 8997041
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=933.7M resident=0K(0%) swapped_out_or_unallocated=933.7M(100%)
Writable regions: Total=8.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=8.4G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 44K 3
CoreAnimation 968K 11
CoreGraphics 8K 1
CoreImage 24K 2
CoreUI image data 1480K 11
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 398.2M 317
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 7.4G 2 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 104K 26
Stack 171.2M 27
Stack Guard 56.0M 1
VM_ALLOCATE 50.9M 244
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 51.0M 522
__DATA_CONST 44K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 411.5M 130
__OBJC_RO 32.2M 1
__OBJC_RW 1892K 2
__TEXT 522.2M 488
__UNICODE 564K 1
mapped file 86.4M 39
shared memory 644K 17
=========== ======= =======
TOTAL 9.5G 1875
TOTAL, minus reserved VM space 1.8G 1875
Log:
UCSF ChimeraX version: 0.93 (2020-04-03)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.5.22
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Sessions |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash restoring Structure |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Corrupted session? Unfortunately, would need the session file to make any headway.