Opened 5 years ago

Closed 5 years ago

#3211 closed defect (duplicate)

Scipy can't import _uarray

Reported by: chimerax-bug-report@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Build System Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.0 (2020-05-12)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | Your computer has Intel graphics driver 7262 with a known bug that
causes all Qt user interface panels to be blank. ChimeraX can partially fix
this but may make some panel titlebars and edges black. Hopefully newer Intel
graphics drivers will fix this.  
  
UCSF ChimeraX version: 1.0rc202005120742 (2020-05-12)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\Users\seb\Dropbox\T2R\VS_Bitter\hT2R16.B99990174.pdb format pdb

Chain information for hT2R16.B99990174.pdb #1  
---  
Chain | Description  
| No description available  
  

> cartoon style modeHelix tube sides 20

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\structure.py", line 1562, in
_update_graphics_if_needed  
s[i]._update_graphics_if_needed()  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\structure.py", line 300, in
_update_graphics_if_needed  
self._create_ribbon_graphics()  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\structure.py", line 553, in _create_ribbon_graphics  
ribbons_drawing.compute_ribbons(self)  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\ribbon.py", line 586, in compute_ribbons  
_make_ribbon_graphics(structure, self)  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\ribbon.py", line 128, in _make_ribbon_graphics  
centers = _arc_helix_geometry(coords, xs_mgr, displays, start, end, geometry)  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\ribbon.py", line 957, in _arc_helix_geometry  
hc = HelixCylinder(coords[start:end])  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\sse.py", line 187, in __init__  
self._try_curved()  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\sse.py", line 392, in _try_curved  
self._curved_optimize(c_center, c_axis, c_radius)  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\sse.py", line 436, in _curved_optimize  
opt = OptArc(self.coords, center, axis, major_radius)  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\chimerax\atomic\sse.py", line 85, in __init__  
from scipy.optimize import minimize  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\scipy\\__init__.py", line 156, in <module>  
from . import fft  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\scipy\fft\\__init__.py", line 76, in <module>  
from ._basic import (  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\scipy\fft\\_basic.py", line 1, in <module>  
from scipy._lib.uarray import generate_multimethod, Dispatchable  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\scipy\\_lib\uarray.py", line 27, in <module>  
from ._uarray import *  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\scipy\\_lib\\_uarray\\__init__.py", line 114, in <module>  
from ._backend import *  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\scipy\\_lib\\_uarray\\_backend.py", line 15, in <module>  
from . import _uarray # type: ignore  
ImportError: DLL load failed: Le module spécifié est introuvable.  
  
Error processing trigger "graphics update":  
ImportError: DLL load failed: Le module spécifié est introuvable.  
  
File "C:\Program Files\ChimeraX 1.0rc202005120742\bin\lib\site-
packages\scipy\\_lib\\_uarray\\_backend.py", line 15, in  
from . import _uarray # type: ignore  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 26.20.100.7262
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel
Manufacturer: Dell Inc.
Model: XPS 13 7390
OS: Microsoft Windows 10 Professionnel (Build 18363)
Memory: 16,952,020,992
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-10510U CPU @ 1.80GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

Change History (2)

comment:1 by pett, 5 years ago

Cc: Tom Goddard added
Component: UnassignedBuild System
Owner: set to Greg Couch
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionScipy can't import _uarray

comment:2 by Greg Couch, 5 years ago

Resolution: duplicate
Status: assignedclosed

Duplicate of #3214.

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