Opened 5 years ago

Closed 5 years ago

#3299 closed defect (duplicate)

unexpected unindent running Volume Viewer

Reported by: wpp15@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Volume Data Version:
Keywords: Cc: Greg Couch
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-7-6.1.7601-SP1
ChimeraX Version: 1.0rc202005150054 (2020-05-15 00:54:28 UTC)
Description
(Describe the actions that caused this problem to occur here)

I cannot open the density map no matter from emdb or the download file.

Log:
UCSF ChimeraX version: 1.0rc202005150054 (2020-05-15)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 9333 fromDatabase emdb

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 258, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 101, in cmd_open  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 128, in provider_open  
(session, ident, format_name, ignore_cache), provider_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 380, in collated_open  
return func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\\__init__.py", line 140, in fetch  
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\emdb_fetch.py", line 49, in fetch_emdb  
name = model_name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\manager.py", line 164, in open_data  
_add_models=False, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 152, in provider_open  
name or model_name_from_path(fi.file_name)), provider_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 381, in collated_open  
return func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\\__init__.py", line 147, in open  
return open_map(session, path, format=_name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3307, in open_map  
smodels, smsg = open_grids(session, sgrids, name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3367, in open_grids  
show_volume_dialog(session)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
  
See log for complete Python traceback.  
  

> open C:/Users/Administrator/Desktop/emd_9333_msk_1.map

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\dialog.py", line 146, in _qt_safe  
if data_format is None else " format " +
StringArg.unparse(data_format.nicknames[0])))  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 101, in cmd_open  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 152, in provider_open  
name or model_name_from_path(fi.file_name)), provider_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 380, in collated_open  
return func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\\__init__.py", line 147, in open  
return open_map(session, path, format=_name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3307, in open_map  
smodels, smsg = open_grids(session, sgrids, name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3367, in open_grids  
show_volume_dialog(session)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
  
See log for complete Python traceback.  
  

> open C:/Users/Administrator/Desktop/emd_9333_msk_1.map

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\dialog.py", line 146, in _qt_safe  
if data_format is None else " format " +
StringArg.unparse(data_format.nicknames[0])))  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 101, in cmd_open  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 152, in provider_open  
name or model_name_from_path(fi.file_name)), provider_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 380, in collated_open  
return func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\\__init__.py", line 147, in open  
return open_map(session, path, format=_name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3307, in open_map  
smodels, smsg = open_grids(session, sgrids, name, **kw)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3367, in open_grids  
show_volume_dialog(session)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume.py", line 3191, in show_volume_dialog  
from .volume_viewer import show_volume_dialog  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0
OpenGL renderer: GeForce 820M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: Inspiron 3442
OS: Microsoft Windows 7 旗舰版  (Build 7601)
Memory: 4,194,283,520
MaxProcessMemory: 8,589,934,464
CPU: 4 Intel(R) Core(TM) i5-4210U CPU @ 1.70GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
File attachment: emd_9333_msk_1.map

emd_9333_msk_1.map​

Attachments (1)

emd_9333_msk_1.map​ (125.0 MB ) - added by wpp15@… 5 years ago.
Added by email2trac

Change History (3)

by wpp15@…, 5 years ago

Attachment: emd_9333_msk_1.map​ added

Added by email2trac

comment:1 by Eric Pettersen, 5 years ago

Cc: Greg Couch added
Component: Unassigned → Volume Data
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → unexpected unindent running Volume Viewer

comment:2 by Tom Goddard, 5 years ago

Resolution: → duplicate
Status: assigned → closed

Was fixed a week ago. Get current ChimeraX.

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