unexpected unindent running Volume Viewer

[borukhse@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.18362
ChimeraX Version: 1.0rc202005150054 (2020-05-15 00:54:28 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.0rc202005150054 (2020-05-15)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "E:\SERGEI's Files\PROJECTS\Masha Sokolova\Paper on crAss-like phage
> RNAP\RNAPs-
> superimposed\gp66-phi14-2-SeMet_refine_17.noanisou.A-onto-5vi5.pdb" format
> pdb

Summary of feedback from opening E:\SERGEI's Files\PROJECTS\Masha
Sokolova\Paper on crAss-like phage RNAP\RNAPs-
superimposed\gp66-phi14-2-SeMet_refine_17.noanisou.A-onto-5vi5.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK Date 2019-08-12 Time 15:06:15 CDT -0500 (1565640375.85 s)  
  
Ignored bad PDB record found on line 2  
REMARK PHENIX refinement  
  
Ignored bad PDB record found on line 4  
REMARK ****************** INPUT FILES AND LABELS
******************************  
  
Ignored bad PDB record found on line 5  
REMARK Reflections:  
  
Ignored bad PDB record found on line 6  
REMARK file name : /home/leiman/work/phi14-2-gp66/LS_CAT_June-1-2019-SeMe  
  
34 messages similar to the above omitted  
Start residue of secondary structure not found: HELIX 96 96 LYS B 18 ASP B 25
1 8  
Start residue of secondary structure not found: HELIX 97 97 LEU B 30 LEU B 40
1 11  
Start residue of secondary structure not found: HELIX 98 98 PRO B 43 PHE B 49
1 7  
Start residue of secondary structure not found: HELIX 99 99 LEU B 106 HIS B
125 1 20  
Start residue of secondary structure not found: HELIX 100 100 ILE B 140 LYS B
161 1 22  
124 messages similar to the above omitted  
  
Chain information for gp66-phi14-2-SeMet_refine_17.noanisou.A-onto-5vi5.pdb #1  
---  
Chain | Description  
A | No description available  
  

> volume style surface

No volumes specified  

> mlp

Map values for surface
"gp66-phi14-2-SeMet_refine_17.noanisou.A-onto-5vi5.pdb_A SES surface": minimum
-31.01, mean -5.419, maximum 42.53  

> show surfaces

> hide surfaces

> hide cartoons

> show cartoons

> show atoms

> hide atoms

> select #1

17344 atoms, 17667 bonds, 1 model selected  

> volume style surface

No volumes specified  
Must specify one map, got 0  

> toolshed show "Volume Viewer"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 621, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1640, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\\__init__.py", line 74, in start_tool  
from . import volume_viewer  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\map\volume_viewer.py", line 4955  
except Exception:  
^  
IndentationError: unexpected unindent  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\ui\gui.py", line 1544, in <lambda>  
action.triggered.connect(lambda arg, cb = callback: cb())  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\volume_menu\volmenu.py", line 55, in callback  
run(ses, "toolshed show %s" % StringArg.unparse(tool_name))  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run  
results = command.run(text, log=log)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2849, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\commands\toolshed.py", line 365, in toolshed_show  
bi.start_tool(session, name)  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 627, in start_tool  
"start_tool() failed for tool %s in bundle %s:\n%s" % (tool_name, self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Volume
Viewer in bundle ChimeraX-Map:  
unexpected unindent (volume_viewer.py, line 4955)  
  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Volume
Viewer in bundle ChimeraX-Map:  
unexpected unindent (volume_viewer.py, line 4955)  
  
File "C:\Program Files\ChimeraX 1.0rc202005150054\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 627, in start_tool  
"start_tool() failed for tool %s in bundle %s:\n%s" % (tool_name, self.name,
str(e)))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 442.19
OpenGL renderer: GeForce GTX 960/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Hewlett-Packard
Model: HP Z420 Workstation
OS: Microsoft Windows 10 Pro (Build 18363)
Memory: 17,104,625,664
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Xeon(R) CPU E5-1620 0 @ 3.60GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

[Eric Pettersen]

Reported by Sergei Borukhov

[Tom Goddard]

Was fixed a week ago. Get current ChimeraX build.