Registration failure

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-08-21)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
warning | 'clip' is a prefix of an existing command 'clipper'  
notes | available bundle cache has not been initialized yet  
Updating list of available bundles failed: [SSL: CERTIFICATE_VERIFY_FAILED]
certificate verify failed: self signed certificate in certificate chain
(_ssl.c:1076)  
  
UCSF ChimeraX version: 0.91 (2019-08-21)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/kumarn26/Documents/Projects/Polymeric IgA Project/2019-08-16
IgA2m2Fc-JC-SC Krios Dataset Proecessing/cisTEM_proc2/phenix-
pentamer/RealSpaceRefine_3/2019-08-30_vol_94_fitted-coot-7.pdb"

Chain information for 2019-08-30_vol_94_fitted-coot-7.pdb #1  
---  
Chain | Description  
A | No description available  
B F G | No description available  
C | No description available  
D | No description available  
E | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
  

> open "/Users/kumarn26/Downloads/run_class001 7.mrc"

Opened run_class001 7.mrc, grid size 340,340,340, pixel 1.2, shown at level
0.00501, step 2, values float32  

> open "/Users/kumarn26/Downloads/run_class001 7.mrc"

Opened run_class001 7.mrc, grid size 340,340,340, pixel 1.2, shown at level
0.00501, step 2, values float32  

> open /Users/kumarn26/Downloads/volume_62_1.mrc

Opened volume_62_1.mrc, grid size 384,384,384, pixel 1.02, shown at level
0.374, step 2, values float32  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 1317, in do_open  
encode_chunked=req.has_header('Transfer-encoding'))  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1244, in request  
self._send_request(method, url, body, headers, encode_chunked)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1290, in _send_request  
self.endheaders(body, encode_chunked=encode_chunked)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1239, in endheaders  
self._send_output(message_body, encode_chunked=encode_chunked)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1026, in _send_output  
self.send(msg)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 966, in send  
self.connect()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/http/client.py",
line 1414, in connect  
server_hostname=server_hostname)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/ssl.py",
line 423, in wrap_socket  
session=session  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/ssl.py",
line 870, in _create  
self.do_handshake()  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/ssl.py",
line 1139, in do_handshake  
self._sslobj.do_handshake()  
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate
verify failed: self signed certificate in certificate chain (_ssl.c:1076)  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py", line 568, in customEvent  
func(*args, **kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/registration/gui.py", line 67, in handle_scheme  
self.session.ui.thread_safe(self._register, url)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py", line 319, in thread_safe  
func(*args, **kw)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/registration/gui.py", line 121, in _register  
join_announcements=values["join_announcements"])  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/registration/cmd.py", line 76, in register  
funding, funding_other, comment)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/registration/cmd.py", line 123, in _get_registration  
with urlopen(RegistrationURL, urlencode(params).encode()) as f:  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 222, in urlopen  
return opener.open(url, data, timeout)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 525, in open  
response = self._open(req, data)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 543, in _open  
'_open', req)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 503, in _call_chain  
result = func(*args)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 1360, in https_open  
context=self._context, check_hostname=self._check_hostname)  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 1319, in do_open  
raise URLError(err)  
urllib.error.URLError: <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED]
certificate verify failed: self signed certificate in certificate chain
(_ssl.c:1076)>  
  
urllib.error.URLError:  
  
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/urllib/request.py",
line 1319, in do_open  
raise URLError(err)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-1.68.22
OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

[Conrad Huang]

Not sure where a self-signed cert would be used when connecting to registration server.