Opened 6 years ago
Last modified 6 years ago
#3329 assigned defect
Changing 2D label model id can cause problems
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.4.0-x86_64-i386-64bit
ChimeraX Version: 1.0rc202005271742 (2020-05-27 17:42:24 UTC)
Description
Changing the id of the 2D labels model makes it a child of the scene_root_model instead of its own parent-less model. This could mess up rendering the 3D models or bounds calculations although I did not observe problems in this test.
Log:
UCSF ChimeraX version: 1.0rc202005270116 (2020-05-27)
© 2016-2020 Regents of the University of California. All rights reserved.
> open /Users/goddard/ucsf/cx-1.0/src/core/test.cxs format session
Log from Wed May 27 17:13:05 2020 Startup Messages
---
warnings | QWebEngineUrlScheme::registerScheme: Scheme "cxcmd" already
registered
QWebEngineUrlScheme::registerScheme: Scheme "help" already registered
QWebEngineUrlScheme::registerScheme: Scheme "cxcmd" already registered
QWebEngineUrlScheme::registerScheme: Scheme "help" already registered
QWebEngineUrlScheme::registerScheme: Scheme "cxcmd" already registered
8 messages similar to the above omitted
Replacing file-saver for 'DCD coordinates' from MDcrds bundle with that from
MD-crds bundle
Replacing opener for 'Gromacs full-precision coordinates' from MDcrds bundle
with that from MD-crds bundle
Replacing opener for 'Gromacs compressed coordinates' from MDcrds bundle with
that from MD-crds bundle
Replacing opener for 'DCD coordinates' from MDcrds bundle with that from MD-
crds bundle
notes | Replacing data format 'Gromacs full-precision coordinates' as defined
by ChimeraX-MDcrds bundle with definition from ChimeraX-MD-crds bundle
Replacing data format 'Gromacs compressed coordinates' as defined by ChimeraX-
MDcrds bundle with definition from ChimeraX-MD-crds bundle
Replacing data format 'DCD coordinates' as defined by ChimeraX-MDcrds bundle
with definition from ChimeraX-MD-crds bundle
UCSF ChimeraX version: 1.0rc202005270116 (2020-05-27)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 5ip2 format mmcif fromDatabase pdb
5ip2 title:
Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex [more
info...]
Chain information for 5ip2 #1
---
Chain | Description
A B C | Nucleoprotein
D F | RNA (5'-D(P*up*up*U)-3')
E | RNA (5'-R(P*up*up*up*up*up*up*up*up*up*up*up*up*up*up*up*up*up*up*U)-3')
> 2dlabels text Hello
> rename #2 id #3
> 2dlabels text Bye-bye ypos .8
> save test.cxs
opened ChimeraX session
> ui tool show Shell
> view
> rename #2 id #3
> rename #3 id #5
> view
> view
> view
OpenGL version: 4.1 ATI-3.8.24
OpenGL renderer: AMD Radeon Pro Vega 20 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,3
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
Boot ROM Version: 1037.100.362.0.0 (iBridge: 17.16.14281.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.4 (19E287)
Kernel Version: Darwin 19.4.0
Time since boot: 18 days 20:53
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Radeon Pro Vega 20:
Chipset Model: Radeon Pro Vega 20
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x69af
Revision ID: 0x00c0
ROM Revision: 113-D2060I-087
VBIOS Version: 113-D20601MA0T-016
Option ROM Version: 113-D20601MA0T-016
EFI Driver Version: 01.01.087
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8
Change History (1)
comment:1 by , 6 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Changing 2D label model id can cause problems |
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