![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Last modified 5 years ago
#3325 feedback defect
Crash when clicking on logged "silhouette false" command
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Logging | Version: | |
| Keywords: | Cc: | Eric Pettersen, Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.93 (2020-04-03)
Description
Last time you used ChimeraX it crashed.
Clicked on silhouette false in Log window after colouring by chain.
Process: ChimeraX [8450]
Path: /Applications/ChimeraX-0.93.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.93.0 (0.93.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [8450]
User ID: 2620
Date/Time: 2020-05-27 13:38:42.831 +1000
OS Version: Mac OS X 10.14.6 (18G4032)
Report Version: 12
Anonymous UUID: 6CD30DDF-BAD6-AF8E-0A74-9DF40DC87D3E
Sleep/Wake UUID: 409C7CD9-DD01-452F-AD2C-8E737CD5FCF7
Time Awake Since Boot: 77000 seconds
Time Since Wake: 9200 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00005ae57b987a40
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x5ae57b987a40:
VM_ALLOCATE 000000014e648000-000000014ec49000 [ 6148K] rw-/rw- SM=PRV
-->
MALLOC_NANO 0000600000000000-0000600008000000 [128.0M] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5f17a2c2 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5f235bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff5f097d8a raise + 26
3 libsystem_platform.dylib 0x00007fff5f22ab5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWebEngineCore 0x0000000112c116c6 0x112be3000 + 190150
6 QtWebEngineCore 0x0000000112c10769 0x112be3000 + 186217
7 QtWebEngineCore 0x0000000112c00865 0x112be3000 + 120933
8 QtQuick 0x00000001196944bc QQuickWindowPrivate::updateDirtyNode(QQuickItem*) + 2908
9 QtQuick 0x0000000119683809 QQuickWindowPrivate::updateDirtyNodes() + 1017
10 QtQuick 0x00000001196831ff QQuickWindowPrivate::syncSceneGraph() + 271
11 QtQuick 0x0000000119758a7c QQuickRenderControl::sync() + 28
12 QtQuickWidgets 0x0000000119ffa46a 0x119ff5000 + 21610
13 QtQuickWidgets 0x0000000119ffa598 0x119ff5000 + 21912
14 QtCore 0x00000001121f2cf6 QObject::event(QEvent*) + 102
15 QtWidgets 0x000000011151c56a QWidget::event(QEvent*) + 4826
16 QtQuickWidgets 0x0000000119ffe2ce QQuickWidget::event(QEvent*) + 782
17 QtWebEngineWidgets 0x0000000112bb60e7 0x112b9b000 + 110823
18 QtWidgets 0x00000001114df70d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
19 QtWidgets 0x00000001114e0b12 QApplication::notify(QObject*, QEvent*) + 594
20 QtWidgets.so 0x000000011109f3ca sipQApplication::notify(QObject*, QEvent*) + 234
21 QtCore 0x00000001121c9564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
22 QtCore 0x0000000112222b7f QTimerInfoList::activateTimers() + 991
23 libqcocoa.dylib 0x000000011bc8b472 0x11bc57000 + 214130
24 com.apple.CoreFoundation 0x00007fff330f7e33 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
25 com.apple.CoreFoundation 0x00007fff330f7dd9 __CFRunLoopDoSource0 + 108
26 com.apple.CoreFoundation 0x00007fff330db79b __CFRunLoopDoSources0 + 195
27 com.apple.CoreFoundation 0x00007fff330dad65 __CFRunLoopRun + 1189
28 com.apple.CoreFoundation 0x00007fff330da66e CFRunLoopRunSpecific + 455
29 com.apple.HIToolbox 0x00007fff323391ab RunCurrentEventLoopInMode + 292
30 com.apple.HIToolbox 0x00007fff32338ee5 ReceiveNextEventCommon + 603
31 com.apple.HIToolbox 0x00007fff32338c76 _BlockUntilNextEventMatchingListInModeWithFilter + 64
32 com.apple.AppKit 0x00007fff306d077d _DPSNextEvent + 1135
33 com.apple.AppKit 0x00007fff306cf46b -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361
34 com.apple.AppKit 0x00007fff306c9588 -[NSApplication run] + 699
35 libqcocoa.dylib 0x000000011bc8c223 0x11bc57000 + 217635
36 QtCore 0x00000001121c4b7f QEventLoop::exec(QFlags) + 431
37 QtCore 0x00000001121c9b72 QCoreApplication::exec() + 130
38 QtWidgets.so 0x000000011118e7d2 meth_QApplication_exec_(_object*, _object*) + 82
39 org.python.python 0x0000000103ea6d62 _PyMethodDef_RawFastCallKeywords + 226
40 org.python.python 0x0000000103ea6289 _PyCFunction_FastCallKeywords + 41
41 org.python.python 0x0000000103f7b300 call_function + 656
42 org.python.python 0x0000000103f77fb7 _PyEval_EvalFrameDefault + 26567
43 org.python.python 0x0000000103ea6731 function_code_fastcall + 177
44 org.python.python 0x0000000103f7b374 call_function + 772
45 org.python.python 0x0000000103f77fb7 _PyEval_EvalFrameDefault + 26567
46 org.python.python 0x0000000103f7c1cc _PyEval_EvalCodeWithName + 3276
47 org.python.python 0x0000000103ea6249 _PyFunction_FastCallKeywords + 217
48 org.python.python 0x0000000103f7b374 call_function + 772
49 org.python.python 0x0000000103f7804e _PyEval_EvalFrameDefault + 26718
50 org.python.python 0x0000000103f7c1cc _PyEval_EvalCodeWithName + 3276
51 org.python.python 0x0000000103f71750 PyEval_EvalCode + 48
52 org.python.python 0x0000000103f6ece7 builtin_exec + 583
53 org.python.python 0x0000000103ea6f15 _PyMethodDef_RawFastCallKeywords + 661
54 org.python.python 0x0000000103ea6289 _PyCFunction_FastCallKeywords + 41
55 org.python.python 0x0000000103f7b300 call_function + 656
56 org.python.python 0x0000000103f7804e _PyEval_EvalFrameDefault + 26718
57 org.python.python 0x0000000103f7c1cc _PyEval_EvalCodeWithName + 3276
58 org.python.python 0x0000000103ea6249 _PyFunction_FastCallKeywords + 217
59 org.python.python 0x0000000103f7b374 call_function + 772
60 org.python.python 0x0000000103f7804e _PyEval_EvalFrameDefault + 26718
61 org.python.python 0x0000000103f7c1cc _PyEval_EvalCodeWithName + 3276
62 org.python.python 0x0000000103ea5d47 _PyFunction_FastCallDict + 455
63 org.python.python 0x0000000103fd6293 pymain_run_module + 147
64 org.python.python 0x0000000103fd537c pymain_main + 5900
65 org.python.python 0x0000000103fd3c63 Py_Main + 51
66 edu.ucsf.cgl.ChimeraX 0x0000000103e76dc8 main + 120
67 libdyld.dylib 0x00007fff5f03f3d5 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5f177866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5f23656e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x000000010595fc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff5f177866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5f23656e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x000000010595fc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff5f177866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5f23656e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x000000010595fc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff330db99e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff330daf0c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff330da66e CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff306d84a2 _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ec7f 0x112be3000 + 35306623
4 QtWebEngineCore 0x0000000114d42aad 0x112be3000 + 34994861
5 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
6 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5f17a78a kevent + 10
1 QtWebEngineCore 0x00000001150503f9 0x112be3000 + 38196217
2 QtWebEngineCore 0x000000011504d70d 0x112be3000 + 38184717
3 QtWebEngineCore 0x0000000114e0472c 0x112be3000 + 35788588
4 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
5 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
6 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
7 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff5f17a78a kevent + 10
1 QtWebEngineCore 0x00000001150503f9 0x112be3000 + 38196217
2 QtWebEngineCore 0x000000011504d70d 0x112be3000 + 38184717
3 QtWebEngineCore 0x0000000114e04714 0x112be3000 + 35788564
4 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
5 QtWebEngineCore 0x0000000114dad4c4 0x112be3000 + 35431620
6 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6d14 0x112be3000 + 35405076
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6d14 0x112be3000 + 35405076
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 10:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6c84 0x112be3000 + 35404932
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 11:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6c84 0x112be3000 + 35404932
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 12:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5f17a78a kevent + 10
1 QtWebEngineCore 0x00000001150503f9 0x112be3000 + 38196217
2 QtWebEngineCore 0x000000011504d70d 0x112be3000 + 38184717
3 QtWebEngineCore 0x0000000114e04714 0x112be3000 + 35788564
4 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
5 QtWebEngineCore 0x00000001146d1a74 0x112be3000 + 28240500
6 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ec7f 0x112be3000 + 35306623
4 QtWebEngineCore 0x0000000114da676a 0x112be3000 + 35403626
5 QtWebEngineCore 0x0000000114da6e0f 0x112be3000 + 35405327
6 QtWebEngineCore 0x0000000114da6cb4 0x112be3000 + 35404980
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 14:: CompositorTileWorker1/70915
0 libsystem_kernel.dylib 0x00007fff5f177866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5f23656e _pthread_cond_wait + 722
2 QtWebEngineCore 0x0000000114dfc9f8 0x112be3000 + 35756536
3 QtWebEngineCore 0x0000000115d84fe8 0x112be3000 + 52043752
4 QtWebEngineCore 0x0000000114dbd0e4 0x112be3000 + 35496164
5 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
6 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 15:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ec7f 0x112be3000 + 35306623
4 QtWebEngineCore 0x0000000114d42aad 0x112be3000 + 34994861
5 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
6 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 16:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d42aa2 0x112be3000 + 34994850
4 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
5 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
6 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
7 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 17:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5f17a78a kevent + 10
1 QtWebEngineCore 0x00000001150503f9 0x112be3000 + 38196217
2 QtWebEngineCore 0x000000011504d70d 0x112be3000 + 38184717
3 QtWebEngineCore 0x0000000114e0472c 0x112be3000 + 35788588
4 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
5 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
6 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
7 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ec7f 0x112be3000 + 35306623
4 QtWebEngineCore 0x0000000114d42aad 0x112be3000 + 34994861
5 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
6 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ec7f 0x112be3000 + 35306623
4 QtWebEngineCore 0x0000000114da676a 0x112be3000 + 35403626
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6d74 0x112be3000 + 35405172
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ec7f 0x112be3000 + 35306623
4 QtWebEngineCore 0x0000000114d42aad 0x112be3000 + 34994861
5 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
6 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 21:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6d14 0x112be3000 + 35405076
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 22:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6c84 0x112be3000 + 35404932
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 23:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da70ab 0x112be3000 + 35405995
6 QtWebEngineCore 0x0000000114da6c84 0x112be3000 + 35404932
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 24:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da6e0f 0x112be3000 + 35405327
6 QtWebEngineCore 0x0000000114da6d14 0x112be3000 + 35405076
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 25:
0 libsystem_pthread.dylib 0x00007fff5f2323f0 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff5f2323f0 start_wqthread + 0
Thread 27:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d8ee71 0x112be3000 + 35307121
4 QtWebEngineCore 0x0000000114da6778 0x112be3000 + 35403640
5 QtWebEngineCore 0x0000000114da6e0f 0x112be3000 + 35405327
6 QtWebEngineCore 0x0000000114da6d14 0x112be3000 + 35405076
7 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
8 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 28:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5f17421a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5f174768 mach_msg + 60
2 QtWebEngineCore 0x0000000114d8ed7d 0x112be3000 + 35306877
3 QtWebEngineCore 0x0000000114d42aa2 0x112be3000 + 34994850
4 QtWebEngineCore 0x0000000114d6bad5 0x112be3000 + 35162837
5 QtWebEngineCore 0x0000000114dbe40c 0x112be3000 + 35501068
6 QtWebEngineCore 0x0000000114dfe167 0x112be3000 + 35762535
7 libsystem_pthread.dylib 0x00007fff5f2332eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5f236249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5f23240d thread_start + 13
Thread 29:
0 libsystem_pthread.dylib 0x00007fff5f2323f0 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010cf335c0 rcx: 0x000000010432aa48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010432aa80 rsp: 0x000000010432aa48
r8: 0x000000010432af48 r9: 0xf8c6aa5b79e4bb50 r10: 0x000000010cf3366c r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff5f17a2c2 rfl: 0x0000000000000286 cr2: 0x00000001040e0fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff5e162000 - 0x7fff5e19dff3 libsandbox.1.dylib (851.270.1) /usr/lib/libsandbox.1.dylib
0x7fff5e19e000 - 0x7fff5e1b0ff7 libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib
0x7fff5e1b1000 - 0x7fff5e1b2ff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib
0x7fff5e1b3000 - 0x7fff5e390fff libsqlite3.dylib (274.26) /usr/lib/libsqlite3.dylib
0x7fff5e454000 - 0x7fff5e483fff libssl.44.dylib (22.260.1) /usr/lib/libssl.44.dylib
0x7fff5e5a9000 - 0x7fff5e5acff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff5e5ad000 - 0x7fff5e5bafff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff5e5bf000 - 0x7fff5e6a2ff3 libxml2.2.dylib (32.15) /usr/lib/libxml2.2.dylib
0x7fff5e6a3000 - 0x7fff5e6cbff3 libxslt.1.dylib (16.7) /usr/lib/libxslt.1.dylib
0x7fff5e6cc000 - 0x7fff5e6deff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff5eec2000 - 0x7fff5eec6ff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff5eec7000 - 0x7fff5eed1ff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib
0x7fff5eed2000 - 0x7fff5eed9ff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff5eeda000 - 0x7fff5eee3ff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib
0x7fff5eee4000 - 0x7fff5ef68fc3 libcorecrypto.dylib (602.260.2) /usr/lib/system/libcorecrypto.dylib
0x7fff5efef000 - 0x7fff5f028ff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib
0x7fff5f029000 - 0x7fff5f055ff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib
0x7fff5f056000 - 0x7fff5f056ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff5f057000 - 0x7fff5f063ff3 libkxld.dylib (4903.278.28) /usr/lib/system/libkxld.dylib
0x7fff5f064000 - 0x7fff5f064ff7 liblaunch.dylib (1336.261.4) /usr/lib/system/liblaunch.dylib
0x7fff5f065000 - 0x7fff5f06afff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib
0x7fff5f06b000 - 0x7fff5f06dff7 libquarantine.dylib (86.270.1) /usr/lib/system/libquarantine.dylib
0x7fff5f06e000 - 0x7fff5f06fff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff5f070000 - 0x7fff5f087ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff5f088000 - 0x7fff5f088ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff5f089000 - 0x7fff5f110fff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib
0x7fff5f111000 - 0x7fff5f114ffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib
0x7fff5f115000 - 0x7fff5f118ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5f119000 - 0x7fff5f11ffff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff5f120000 - 0x7fff5f126ffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5f127000 - 0x7fff5f172ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff5f173000 - 0x7fff5f19bff7 libsystem_kernel.dylib (4903.278.28) /usr/lib/system/libsystem_kernel.dylib
0x7fff5f19c000 - 0x7fff5f1e7ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff5f1e8000 - 0x7fff5f212fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff5f213000 - 0x7fff5f21dff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5f21e000 - 0x7fff5f225fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff5f226000 - 0x7fff5f22ffef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib
0x7fff5f230000 - 0x7fff5f23aff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff5f23b000 - 0x7fff5f23eff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5f23f000 - 0x7fff5f241ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff5f242000 - 0x7fff5f249ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5f24a000 - 0x7fff5f25fff7 libsystem_trace.dylib (906.260.2) /usr/lib/system/libsystem_trace.dylib
0x7fff5f261000 - 0x7fff5f266ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5f267000 - 0x7fff5f296fff libxpc.dylib (1336.261.4) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 286179
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=704.4M resident=0K(0%) swapped_out_or_unallocated=704.4M(100%)
Writable regions: Total=1.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.5G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 2
Activity Tracing 256K 1
CG backing stores 672K 2
CG image 128K 26
CoreAnimation 220K 36
CoreGraphics 8K 1
CoreImage 132K 30
CoreUI image data 1440K 32
CoreUI image file 360K 4
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 642.4M 227
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 116K 29
Stack 187.7M 30
Stack Guard 56.0M 1
VM_ALLOCATE 233.5M 239
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 49.5M 517
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 245.9M 138
__TEXT 458.6M 491
__UNICODE 564K 1
mapped file 80.0M 63
shared memory 768K 18
=========== ======= =======
TOTAL 2.3G 1910
TOTAL, minus reserved VM space 1.9G 1910
Log:
UCSF ChimeraX version: 0.93 (2020-04-03)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-12.10.17
OpenGL renderer: Intel Iris Pro OpenGL Engine
OpenGL vendor: Intel Inc.
Change History (3)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Logging |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash when clicking on logged "silhouette false" command |
comment:2 by , 5 years ago
| Status: | assigned → feedback |
|---|
I can't reproduce this. How easy is it for you to reproduce?
follow-up: 3 comment:3 by , 5 years ago
I haven't had the error reoccur. Cheers.
________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Friday, 29 May 2020 10:22 AM
Cc: goddard@cgl.ucsf.edu <goddard@cgl.ucsf.edu>; gregc@cgl.ucsf.edu <gregc@cgl.ucsf.edu>; Nicholas Kirk <kirk.n@wehi.edu.au>; pett@cgl.ucsf.edu <pett@cgl.ucsf.edu>
Subject: Re: [ChimeraX] #3325: Crash when clicking on logged "silhouette false" command
#3325: Crash when clicking on logged "silhouette false" command
-------------------------------+------------------------
Reporter: kirk.n@… | Owner: Greg Couch
Type: defect | Status: feedback
Priority: normal | Milestone:
Component: Logging | Version:
Resolution: | Keywords:
Blocked By: | Blocking:
Notify when closed: | Platform: all
Project: ChimeraX |
-------------------------------+------------------------
Changes (by Greg Couch):
* status: assigned => feedback
Comment:
I can't reproduce this. How easy is it for you to reproduce?
--
Ticket URL: <https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/3325#comment:2>
ChimeraX <http://www.rbvi.ucsf.edu/chimerax/>
ChimeraX Issue Tracker
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Reported by Nicholas Kirk