Timeline



Jul 2, 2022:

7:42 PM Ticket #7214 (crosslinks histogram: AttributeError: 'QMouseEvent' object has no ...) created by chimerax-bug-report@…
[…]
7:13 PM Ticket #7213 (crosslinks histogtam: AttributeError: 'QMouseEvent' object has no ...) created by chimerax-bug-report@…
[…]
4:46 PM Ticket #7212 ('DefaultApi' object has no attribute 'newer_versions') created by chimerax-bug-report@…
[…]
4:31 AM Ticket #7211 (Bad curly-brackets label fouls up subsequent label attempts) created by Tristan Croll
[…]

Jul 1, 2022:

3:49 PM Ticket #7210 (Crash in fork) created by chimerax-bug-report@…
[…]
3:42 PM Ticket #7209 (Mac notarization fails about 1/4 of the time: "A timestamp was ...) created by Tom Goddard
Our nightly builds on the Mac often fail because of a notarization …
8:37 AM Ticket #7208 (Crash in fork) created by chimerax-bug-report@…
[…]
1:48 AM Ticket #7207 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 30, 2022:

5:08 PM Ticket #7206 (Volume not in Surface Color volume menu) created by chimerax-bug-report@…
[…]
1:49 PM Ticket #7205 (Morph: index out of bounds) created by nxb318@…
[…]
12:47 PM Ticket #7204 (Web service access denial) created by seoh@…
[…]
12:45 PM Ticket #7203 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
10:56 AM Ticket #7195 (Crash creating QWebEngineProfile at startup) closed by pett
can't reproduce: Again, some commands in log despite this being a startup crash.
9:36 AM Ticket #7202 (ViewDockX saving session: 'QEventLoop' object has no attribute 'exec_') created by wkweigel@…
[…]
9:35 AM Ticket #7201 (ViewDockX saving session: 'QEventLoop' object has no attribute 'exec_') created by wweigel@…
[…]
8:50 AM Ticket #7200 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by chimerax-bug-report@…
[…]
2:54 AM Ticket #7199 (Can't import libGLU.so.1) created by chimerax-bug-report@…
[…]
2:22 AM Ticket #7198 (Crash in fork) created by chimerax-bug-report@…
[…]

Jun 29, 2022:

9:19 PM Ticket #7197 (Crash creating QWebEngineProfile at startup) created by chimerax-bug-report@…
[…]
8:43 PM Ticket #7196 (Crash during drag/drop) created by ichcharisma@…
[…]
6:33 PM Ticket #7195 (Crash creating QWebEngineProfile at startup) created by chimerax-bug-report@…
[…]
10:53 AM Ticket #7194 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.3
10:25 AM Ticket #7194 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
10:04 AM Ticket #7193 (Install cruft) created by Tristan Croll
[…]
9:24 AM Ticket #7192 (Crash creating QWebEngineProfile at startup) closed by pett
can't reproduce: Don't know how there could be "volume" commands in the log since it …
9:22 AM Ticket #7191 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
5:35 AM Ticket #7192 (Crash creating QWebEngineProfile at startup) created by chimerax-bug-report@…
[…]
2:16 AM Ticket #7191 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Jun 28, 2022:

10:59 PM Ticket #7159 (Bump setuptools) closed by Zach Pearson
fixed: Tested on Linux and Windows. Using the new pip bundle, I was able to …
10:47 AM Ticket #7190 (Various Windows 11 problems) closed by Tom Goddard
nonchimerax: The most likely cause of the blank graphics in ChimeraX is that your …
10:38 AM Ticket #7188 (WSL2: Attempt to retrieve context when no valid context) closed by Tom Goddard
limitation: WSL2 not supported.
10:36 AM Ticket #7187 (Crosslink histogram: 'QMouseEvent' object has no attribute 'x') closed by Tom Goddard
duplicate: This was fixed months ago and the fix is in ChimeraX 1.4.
10:33 AM Ticket #7186 (WSL2: Attempt to retrieve context when no valid context) closed by Tom Goddard
limitation: ChimeraX does not work in Windows System for Linux 2 using Wayland, …
10:32 AM Ticket #7184 (Crash in Qt event loop running AlphaFold prediction) closed by Tom Goddard
can't reproduce: Probable crash related to Qt html widget used by AlphaFold. There are …
10:15 AM 2022-6-30 created by Tom Goddard
10:14 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:09 AM Ticket #7189 (Coulombic: No module named 'chimerax.atom_search_lib') closed by pett
fixed: Fixed a week after this build.
9:00 AM Ticket #7185 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:32 AM Ticket #7190 (Various Windows 11 problems) created by jxwang@…
[…] Screenshot.png
8:13 AM Ticket #7189 (Coulombic: No module named 'chimerax.atom_search_lib') created by chimerax-bug-report@…
[…]
7:06 AM Ticket #7188 (WSL2: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #7187 (Crosslink histogram: 'QMouseEvent' object has no attribute 'x') created by andrea.graziadei@…
[…]
4:45 AM Ticket #7186 (WSL2: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
1:15 AM Ticket #7180 (ISOLDE restrain distances: ffi_prep_cif_var failed) closed by Tristan Croll
fixed: Great! While I'm still (a) really surprised that ctypes didn't throw …

Jun 27, 2022:

10:14 PM Ticket #4762 (Install PyPi packages with a ChimeraX command) closed by Zach Pearson
fixed: Added a 'devel pip' alias
6:12 PM Ticket #7185 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:07 PM Ticket #7184 (Crash in Qt event loop running AlphaFold prediction) created by chimerax-bug-report@…
[…]
3:36 PM Ticket #1745 (Error opening DICOM with lossless JPEG image encoding) closed by Zach Pearson
wontfix: After the developers meeting, the agreed upon resolution was not to …
3:34 PM Dev2022-6-27 edited by Tom Goddard
(diff)
11:34 AM Ticket #7183 (Restore session: _pickle.UnpicklingError: invalid load key) closed by pett
duplicate
10:57 AM Ticket #7179 (Crash making OpenGL context current during window resize) closed by Tom Goddard
can't reproduce: Access violation. Seems like a Qt bug.
10:39 AM Ticket #7183 (Restore session: _pickle.UnpicklingError: invalid load key) created by chimerax-bug-report@…
[…]
9:28 AM Ticket #7182 (Out of disk space writing command history) closed by pett
nonchimerax: Hi Edoardo, The issue is that one of your disks is out of space, and …
9:13 AM Ticket #7181 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:09 AM Ticket #7178 (Cannot restore session: invalid load key, '\x04') closed by pett
duplicate: Hi Lu, You can't restore sessions saved by newer versions of ChimeraX …
9:07 AM Ticket #7177 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:05 AM Ticket #7176 (Unknown crash) closed by pett
can't reproduce
9:04 AM Ticket #7175 (Crash running garbage collection after closing tool) closed by pett
can't reproduce: Possibly the XMAS tool
9:01 AM Ticket #7174 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:59 AM Ticket #7171 (Tristan cannot log into Trac) closed by pett
fixed
6:59 AM Ticket #7182 (Out of disk space writing command history) created by edoardo.dimprima@…
[…]
3:40 AM Ticket #7181 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
2:42 AM Ticket #7180 (ISOLDE restrain distances: ffi_prep_cif_var failed) created by sean.connell@…
[…]

Jun 26, 2022:

3:19 PM Ticket #7179 (Crash making OpenGL context current during window resize) created by chimerax-bug-report@…
[…]
9:56 AM Ticket #7178 (Cannot restore session: invalid load key, '\x04') created by lu.yang@…
[…]
8:40 AM Ticket #7177 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Jun 25, 2022:

10:30 PM Ticket #7176 (Unknown crash) created by chimerax-bug-report@…
[…]
5:14 PM Ticket #7169 (ISOLDE installed into incompatible ChimeraX) closed by Greg Couch
fixed: I've patched this by hand by changing the dependency shown by the …
9:53 AM Ticket #7175 (Crash running garbage collection after closing tool) created by chimerax-bug-report@…
[…]
1:39 AM Ticket #7174 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Jun 24, 2022:

5:52 PM Ticket #6700 (Crash using File→Open on Windows and/or in return statement if folder ...) closed by pett
can't reproduce: The "stack overflow" could be an artifact of problems with the Windows …
4:40 PM Ticket #7172 (Allow substituting arguments in a .cxc file command script) closed by Tom Goddard
fixed: I made the runscript command accept .cxc files (or .py as before). …
2:54 PM Dev2022-6-27 edited by Tom Goddard
(diff)
2:46 PM Ticket #1745 (Error opening DICOM with lossless JPEG image encoding) reopened by Zach Pearson
2:08 PM Ticket #7173 (RFE: Get optional dependencies from the Toolshed and/or pip) created by Zach Pearson
Tom notes that the ChimeraX distribution is growing large. I don't …
12:39 PM Ticket #7172 (Allow substituting arguments in a .cxc file command script) created by p.shah.lab@…
Pranav Shah asked how to use two filename arguments to a *.cxc command …
11:51 AM Ticket #7164 (RFE: "pae" arguent to "alphafold match") closed by Tom Goddard
fixed: Done. I added a "pae" option (default false) to the alphafold match …
11:27 AM Ticket #7171 (Tristan cannot log into Trac) created by Tristan Croll
Hi all, Trac seems to have stopped accepting my login credentials. …
11:03 AM Ticket #6921 (RFE: Flatten the namespace package in the source code, somehow) closed by Zach Pearson
fixed: Moved core down to bundles.
10:52 AM Ticket #7163 (RFE: AlphaFoldPAE public matrix attribute) closed by Tom Goddard
fixed: Done. Added pae_matrix property to AlphaFoldPAE.
10:45 AM Ticket #7170 (Session restore: decompression failure) created by ykulathu@…
[…]
10:26 AM Ticket #7156 (AlphaFold Error Plot: local variable 'path' referenced before assignment) closed by Tom Goddard
fixed: Fixed in tomorrow's daily build. This error using the Browse button …
9:40 AM Ticket #7169 (ISOLDE installed into incompatible ChimeraX) created by chimerax-bug-report@…
[…]
9:31 AM Ticket #7167 (Crash using File→Open on Windows and/or in return statement) closed by pett
duplicate
9:18 AM Ticket #7162 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.4, but before the Python upgrade
9:14 AM Ticket #7161 (Restore new session in old version) closed by pett
not a bug: Not sure how the message could be clearer than "update your version of …
9:09 AM Ticket #7160 (QObject::~QObject: Timers cannot be stopped from another thread) closed by pett
can't reproduce
9:03 AM Ticket #7157 (AlphaFold Error Plot: local variable 'path' referenced before assignment) closed by pett
duplicate
9:00 AM Ticket #7155 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:29 AM Ticket #7168 (ISOLDE/OpenMM: fitting Ramachandran outliers: Particle coordinate is nan) created by dkuntz@…
[…]
5:01 AM Ticket #7167 (Crash using File→Open on Windows and/or in return statement) created by xiyong.song@…
[…]
5:00 AM Ticket #7166 (Crash using File→Open on Windows and/or in return statement) created by xiyong.song@…
[…]
2:41 AM Ticket #7165 (Crash using File→Open on Windows) created by lucas.tafurpetrozzi@…
[…]
1:46 AM Ticket #7164 (RFE: "pae" arguent to "alphafold match") created by Tristan Croll
[…]
1:45 AM Ticket #7163 (RFE: AlphaFoldPAE public matrix attribute) created by Tristan Croll
[…]

Jun 23, 2022:

10:52 PM Ticket #7162 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
7:13 PM Ticket #7161 (Restore new session in old version) created by chimerax-bug-report@…
[…]
6:49 PM Ticket #7160 (QObject::~QObject: Timers cannot be stopped from another thread) created by chimerax-bug-report@…
[…]
5:36 PM Ticket #7159 (Bump setuptools) created by Zach Pearson
Now that we no longer depend on suds, we're in a position where we can …
4:26 PM Ticket #7067 (Save dialog enhancement) closed by pett
limitation: Glad that works for you! --Eric
3:33 PM Dev2022-6-23 edited by Tom Goddard
(diff)
2:09 PM Dev2022-6-23 edited by Zach Pearson
(diff)
1:52 PM Dev2022-6-23 edited by Tom Goddard
(diff)
1:43 PM phenix-5-4-22 edited by pett
(diff)
1:41 PM 2022-6-23 edited by pett
(diff)
1:12 PM Ticket #7158 (Make a GUI panel for volume surface and mesh options) created by wangc@…
Begin forwarded message: From: 王超 via ChimeraX-users …
12:18 PM 2022-6-23 edited by Tom Goddard
(diff)
12:03 PM DeveloperMeetings edited by Zach Pearson
(diff)
12:03 PM Dev2022-6-23 created by Zach Pearson
11:48 AM phenix-6-23-22 edited by pett
(diff)
4:52 AM Ticket #7157 (AlphaFold Error Plot: local variable 'path' referenced before assignment) created by hzauzsmj@…
[…]
4:39 AM Ticket #7156 (AlphaFold Error Plot: local variable 'path' referenced before assignment) created by hzauzsmj@…
[…]

Jun 22, 2022:

11:59 PM Ticket #4754 (bz2 missing) closed by Greg Couch
fixed: This was fixed on 12 January 2022. So it is in the 1.4 release.
11:55 PM Ticket #4847 (Windows 10 VM) closed by Greg Couch
limitation: Just to follow up on this ticket. This has been discussed in the …
11:43 PM Ticket #2750 (Certificate error fetching EDS map on some platforms) closed by Greg Couch
fixed: Linux works.
11:40 PM Ticket #3355 (Open ticket with UCSF IT to open up pre-release toolshed to outside ...) closed by Greg Couch
limitation: This has not proved to be an issue in practice. The toolshed preview …
11:37 PM Ticket #5003 (Unable to open ChimeraX) closed by Greg Couch
fixed: Glad to hear that you got ChimeraX working. One last thought. Maybe …
11:25 PM Ticket #7096 (ChimeraX 1.4 update panel link gets generic Linux version instead of ...) closed by Greg Couch
fixed
11:20 PM Ticket #7155 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
6:43 PM Ticket #7154 (Crash during fork) created by yue.wang@…
[…]
6:14 PM Dev2022-6-27 edited by Zach Pearson
(diff)
5:58 PM Ticket #3758 (Update gdcm dicom library for Python 3.8) closed by Zach Pearson
fixed
5:58 PM Ticket #1745 (Error opening DICOM with lossless JPEG image encoding) closed by Zach Pearson
fixed: (Same resolution as #3758) Added python-gdcm==3.0.12 to …
5:58 PM phenix-6-23-22 edited by pett
(diff)
5:27 PM Ticket #7149 (Status bar: Attempt to retrieve context when no valid context) closed by Greg Couch
duplicate: Fixed in in daily build.
5:26 PM Ticket #7150 (Remove Ubuntu 16 and 18 daily builds from web page) closed by Greg Couch
fixed: Done.
4:59 PM Ticket #7153 (Crash in event loop) created by cco121@…
[…]
4:31 PM Ticket #7105 (Menus are truncated at the bottom on Windows 11) closed by Zach Pearson
can't reproduce: Installed 1.4 and a 1.5 daily build onto my Windows 11 machine. …
4:16 PM Ticket #7152 (Make toolshed update notification only appear if user has used an ...) created by Tom Goddard
In ticket #7123 Zach was interested in putting an updated version of …
4:10 PM Ticket #7151 (ChimeraX crashes opening cif file on WSL2) closed by Greg Couch
limitation: Thank you for reporting this. It is not something I would have tried …
4:01 PM Ticket #6032 (Error restoring session: blastprotein: __init__() missing 1 required ...) closed by Zach Pearson
fixed: Superseded by ChimeraX 1.4.
3:50 PM Ticket #7114 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
fixed: The original OpenGL error was fixed by using a daily build. I made a …
3:45 PM Ticket #7151 (ChimeraX crashes opening cif file on WSL2) created by kamadak@…
In ticket #7114 Kama is trying to run ChimeraX daily build (June 22, …
3:38 PM Ticket #7150 (Remove Ubuntu 16 and 18 daily builds from web page) created by Tom Goddard
The download page is showing very old Ubuntu 16 and 18 daily builds. …
3:32 PM Ticket #7123 (Basic Actions saving session: 'QEventLoop' object has no attribute 'exec_') closed by Zach Pearson
fixed: That did fix session saving/restoring. We might put the new version on …
1:31 PM phenix-6-23-22 edited by pett
(diff)
1:29 PM Ticket #5223 (Replace Opal web services) closed by pett
fixed: Muscle/Clustal-Omega services ported.
11:30 AM phenix-6-23-22 edited by pett
(diff)
11:30 AM phenix-6-23-22 edited by pett
(diff)
11:24 AM phenix-6-23-22 edited by pett
(diff)
11:19 AM phenix-6-23-22 edited by pett
(diff)
11:15 AM phenix-6-23-22 edited by pett
(diff)
11:11 AM phenix-6-23-22 edited by pett
(diff)
10:45 AM phenix-6-23-22 created by pett
10:44 AM Features edited by pett
(diff)
10:14 AM Ticket #7148 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
9:26 AM Ticket #7149 (Status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
9:24 AM Ticket #7146 (Crash in event loop) closed by pett
can't reproduce: And there have been many bug fixes and improvements since the 1.2.5 …
9:16 AM Ticket #7147 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
9:12 AM Ticket #7145 (Crash in event loop on Mac in NSTextInputContext) closed by pett
can't reproduce: Apparently just after startup
9:09 AM Ticket #7144 (Crash in garbage collection after tool destruction) closed by pett
can't reproduce: I understand _what's_ happening (garbage collection is being called to …
7:53 AM Ticket #7148 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
6:17 AM Ticket #7147 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

Jun 21, 2022:

8:34 PM Ticket #7146 (Crash in event loop) created by magicairben6@…
[…]
8:10 PM Ticket #7145 (Crash in event loop on Mac in NSTextInputContext) created by chimerax-bug-report@…
[…]
5:15 PM Ticket #7144 (Crash in garbage collection after tool destruction) created by chimerax-bug-report@…
[…]
11:39 AM Ticket #7143 (RFE: ortho/perspective control on Side View GUI) created by Elaine Meng
What do you think about having an option in the Side View to switch …
11:33 AM Ticket #7122 (FindHBond: atom unexpectedly has no neighbors) closed by pett
fixed
11:11 AM Ticket #7141 (Crash running AlphaFold prediction) closed by Tom Goddard
can't reproduce: Probable crash in Qt html panel for AlphaFold.
10:38 AM Ticket #7130 (Crash setting volume level?) closed by Tom Goddard
can't reproduce: Could be a graphics driver crash. Does not make sense that the log …
10:30 AM Ticket #7128 (Crash saving STL) closed by Tom Goddard
can't reproduce: The last command before the crash was saving an STL file. But the Mac …
10:18 AM Ticket #7124 (glTexImage2D: out of memory) closed by Tom Goddard
can't reproduce: ChimeraX produced an OpenGL graphics error at startup trying to draw …
9:50 AM Ticket #7142 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
9:46 AM Ticket #7139 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce
9:44 AM Ticket #7138 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:43 AM Ticket #7137 (Crash while user closing window) closed by pett
can't reproduce
9:40 AM Ticket #7136 (Crash deleting some tool's interface) closed by pett
can't reproduce: Possibly the XMAS tool
8:53 AM Ticket #7142 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
12:44 AM Ticket #7141 (Crash running AlphaFold prediction) created by chimerax-bug-report@…
[…]

Jun 20, 2022:

8:21 PM Ticket #7140 (Problems with the display of cyclic peptides) created by chen_mangkun0101@…
[…] [[Image(...)]]
6:58 PM Ticket #7139 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
6:04 PM Ticket #7138 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:48 PM Ticket #7137 (Crash while user closing window) created by chimerax-bug-report@…
[…]
1:56 PM Ticket #7127 (problem running AlfaFold Prediction) closed by Tom Goddard
fixed: I just fixed a problem running AlphaFold predictions in ChimeraX …
1:44 PM Ticket #7135 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
1:43 PM Ticket #7134 (XMAS: crash in event loop) closed by pett
can't reproduce
1:42 PM Ticket #7133 (Crash in event loop) closed by pett
can't reproduce
1:41 PM Ticket #7132 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
1:39 PM Ticket #7131 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
10:53 AM Ticket #7136 (Crash deleting some tool's interface) created by chimerax-bug-report@…
[…]
9:03 AM Ticket #7126 (Unknown crash) closed by pett
can't reproduce
9:02 AM Ticket #7125 (Crash in Qt on exit) closed by pett
can't reproduce
8:13 AM Ticket #7135 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
8:08 AM Ticket #7134 (XMAS: crash in event loop) created by chimerax-bug-report@…
[…]
7:57 AM Ticket #7133 (Crash in event loop) created by chimerax-bug-report@…
[…]
7:50 AM Ticket #7132 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
6:50 AM Ticket #7131 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:44 AM Ticket #7130 (Crash setting volume level?) created by chimerax-bug-report@…
[…]
1:51 AM Ticket #7129 (Crash forking process) created by jongseopark@…
[…]

Jun 19, 2022:

2:15 PM Ticket #7128 (Crash saving STL) created by j.kenkel@…
[…] 7x2f.pdb
7:52 AM Ticket #7127 (problem running AlfaFold Prediction) created by rubinjr@…
[…]
5:58 AM Ticket #7126 (Unknown crash) created by chimerax-bug-report@…
[…]

Jun 18, 2022:

10:54 PM Ticket #7125 (Crash in Qt on exit) created by chimerax-bug-report@…
[…]
9:16 PM Ticket #7124 (glTexImage2D: out of memory) created by 196891@…
[…]
9:53 AM Ticket #7123 (Basic Actions saving session: 'QEventLoop' object has no attribute 'exec_') created by marta.carroni@…
[…]

Jun 17, 2022:

5:16 PM ChangeLog edited by Elaine Meng
(diff)
3:29 PM Ticket #7122 (FindHBond: atom unexpectedly has no neighbors) created by chimerax-bug-report@…
[…]
12:56 PM ChangeLog edited by pett
(diff)
11:40 AM Ticket #7113 (Session save: function 'set_pbgroup_py_instance' not found) closed by pett
fixed: Hi Martin, Thanks for reporting this problem. I have fixed it now …
10:52 AM Ticket #7121 (Crash in event loop) closed by pett
can't reproduce
10:42 AM Ticket #7121 (Crash in event loop) created by chimerax-bug-report@…
[…]
9:37 AM Ticket #7120 (Error from second "vr true") closed by Tom Goddard
can't reproduce: No clues as to what caused the crash in the event loop. At the end of …
9:09 AM Ticket #7112 (Crash in clipper associate) closed by Tristan Croll
can't reproduce: Chances are this is a duplicate of #6219 (which is fixed for 1.4), but …
9:06 AM Ticket #7117 (Didn't find section 'Main' in tab 'ISOLDE') closed by Tristan Croll
fixed: Thanks for the report. This happens on the very first install (via the …
8:57 AM Ticket #7119 (Crash creating QWebEngineProfile at startup) closed by pett
duplicate
8:56 AM Ticket #7118 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce
8:53 AM Ticket #7116 (Crash in event loop) closed by pett
can't reproduce
7:30 AM Ticket #7120 (Error from second "vr true") created by chimerax-bug-report@…
[…]
3:29 AM Ticket #7119 (Crash creating QWebEngineProfile at startup) created by chimerax-bug-report@…
[…]
2:49 AM Ticket #7118 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
2:44 AM Ticket #7117 (Didn't find section 'Main' in tab 'ISOLDE') created by joel.mackay@…
[…]
12:47 AM Ticket #7116 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 16, 2022:

5:59 PM Ticket #1898 (Option to number based on reference sequence) closed by pett
fixed: Okay, I went ahead and implemented your suggestion rather than the …
4:40 PM Ticket #7115 (ChimeraX bug report submission) closed by Zach Pearson
duplicate: Duplicate of #7114.
4:33 PM Ticket #7115 (ChimeraX bug report submission) created by kamadak@…
[…]
4:30 PM Ticket #7114 (Draw status bar: Attempt to retrieve context when no valid context) created by kamadak@…
[…]
4:17 PM 2022-6-16 edited by Scooter Morris
(diff)
4:11 PM Dev2022-6-27 edited by Zach Pearson
(diff)
4:07 PM DeveloperMeetings edited by Zach Pearson
(diff)
4:07 PM 2022-6-23 created by Zach Pearson
3:29 PM Ticket #7113 (Session save: function 'set_pbgroup_py_instance' not found) created by martin.pacesa@…
[…]
3:26 PM 2022-6-16 edited by Scooter Morris
(diff)
3:16 PM 2022-6-16 edited by Scooter Morris
(diff)
3:11 PM 2022-6-16 edited by Scooter Morris
(diff)
2:43 PM Ticket #7112 (Crash in clipper associate) created by chimerax-bug-report@…
[…]
1:21 PM Ticket #7100 (ChimeraX is not starting after the successful installation.) closed by Greg Couch
nonchimerax: We have no experience with niceDCV. It looks promising. And for …
1:11 PM 2022-6-16 edited by Tom Goddard
(diff)
12:21 PM Ticket #7110 (Coordset not recorded) closed by Tom Goddard
not a bug: You need to put a wait command after your coordset command in the …
10:30 AM Ticket #7111 (Cannot save command history) closed by pett
nonchimerax: User's home directory became a read-only file system in mid session!
10:21 AM Ticket #7111 (Cannot save command history) created by chimerax-bug-report@…
[…]
8:52 AM Ticket #7110 (Coordset not recorded) created by bssfh@…
[…]
8:38 AM Ticket #7109 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:36 AM Ticket #7108 (Crash using File→Open on Windows) closed by pett
can't reproduce: Hi Tabassum, Did this crash occur while you were using the File→Open …
8:33 AM Ticket #7107 (Crash in QMainWindow::removeDockWidget() closed by pett
can't reproduce: Shouldn't there be a Python stack trace too? And a log from the crash?
7:12 AM Ticket #7109 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:53 AM Ticket #7108 (Crash using File→Open on Windows) created by tabassumkhair.barbhuiya@…
[…]

Jun 15, 2022:

8:32 PM Ticket #7107 (Crash in QMainWindow::removeDockWidget() created by chimerax-bug-report@…
[…]
7:40 PM Ticket #7106 (Session files registered to ChimeraX 1.3 instead of 1.4 on Windows) created by goddard@…
[…]
7:16 PM Ticket #7105 (Menus are truncated at the bottom on Windows 11) created by jihmailed@…
Jonathan Jih reports that menu panes are truncated in ChimeraX 1.4 on …
7:09 PM Ticket #7104 (Side view is closed when any session is opened) created by jihmailed@…
Jonathan Jih reports that side view disappears whenever he loads a …
5:30 PM Ticket #7103 (Volume Viewer after session restore: wrapped C/C++ object of type ...) closed by Tom Goddard
fixed: Fixed. Made code ignore volume viewer resize callback if volume …
3:21 PM Ticket #6828 ('DefaultApi' object has no attribute 'newer_versions') closed by Zach Pearson
fixed: Daily build is from 2022-01-22, while this error should be fixed in …
3:04 PM Ticket #6978 (Blocking not honored for web jobs) closed by Zach Pearson
fixed: OK, that seemed to work.
2:46 PM Ticket #6978 (Blocking not honored for web jobs) reopened by pett
Is there a particular reason you are doing kw.pop('blocking', False) …
2:33 PM Ticket #7103 (Volume Viewer after session restore: wrapped C/C++ object of type ...) created by jihmailed@…
[…]
1:12 PM Ticket #6978 (Blocking not honored for web jobs) closed by Zach Pearson
fixed: Fixed in …
1:04 PM ChangeLog edited by Elaine Meng
(diff)
11:41 AM Ticket #7102 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:28 AM Ticket #7102 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
11:21 AM Ticket #7101 (Memory leak opening and closing atomic models) created by goddard@…
[…] test_memleak.py
10:35 AM Ticket #7099 (Updateing OS from Ubuntu 18.04. Where to go?) closed by pett
invalid
10:25 AM Ticket #7100 (ChimeraX is not starting after the successful installation.) created by akopokov@…
[…] X2go_session_error.PNG
10:18 AM Ticket #7099 (Updateing OS from Ubuntu 18.04. Where to go?) created by jacob_r_anderson@…
[…]
9:58 AM Ticket #7098 (Expose event drawing status line on Linux: glClear: invalid operation) closed by Tom Goddard
can't reproduce: Have seen the expose event drawing the status line cause OpenGL errors …
9:29 AM Ticket #7097 (Crash in event loop after opening 6000+ BILD objects) closed by pett
can't reproduce
7:17 AM Ticket #7098 (Expose event drawing status line on Linux: glClear: invalid operation) created by chimerax-bug-report@…
[…]
5:42 AM Ticket #7097 (Crash in event loop after opening 6000+ BILD objects) created by chimerax-bug-report@…
[…]

Jun 14, 2022:

5:12 PM Ticket #7096 (ChimeraX 1.4 update panel link gets generic Linux version instead of ...) created by goddard@…
[…]
11:59 AM Ticket #7095 (Solidify ChimeraX app name on Windows) created by Zach Pearson
In our last developer meeting we discussed the name of ChimeraX on …
11:57 AM Ticket #7094 (RFE: Persist tasks across ChimeraX sessions) created by Zach Pearson
It should be possible for a user to start a job, close ChimeraX, …
11:18 AM Dev2022-6-27 edited by Tom Goddard
(diff)
11:17 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:16 AM Dev2022-6-27 created by Tom Goddard
11:13 AM 2022-6-16 created by Tom Goddard
11:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:08 AM Ticket #7093 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:47 AM Ticket #7093 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
9:17 AM Ticket #7092 (Crash in event loop after session opened) closed by pett
can't reproduce
9:13 AM Ticket #7092 (Crash in event loop after session opened) created by chimerax-bug-report@…
[…]
9:03 AM Ticket #7091 (Add charge: Could not come up with unique atom name in mega-residue) closed by pett
duplicate: Already fixed by treating UNK as ALA. This structure is hopeless …
8:53 AM Ticket #7088 (Crash in event loop) closed by pett
can't reproduce
8:52 AM Ticket #7087 (Unknown problem) closed by pett
not a bug: No actual problem reported.
3:12 AM Ticket #7091 (Add charge: Could not come up with unique atom name in mega-residue) created by chimerax-bug-report@…
[…]
2:20 AM Ticket #7090 (Toolbar buttons not created when ISOLDE installed) created by sean.connell@…
[…]
1:57 AM Ticket #7089 (Toolbar buttons not added when bundle installed) created by Tristan Croll
[…]
12:02 AM Ticket #7088 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 13, 2022:

11:12 PM Dev2022-6-16 edited by Zach Pearson
(diff)
10:57 PM Dev2022-6-16 edited by Zach Pearson
(diff)
5:06 PM Ticket #7085 (NaN in surface calculation) closed by Tom Goddard
fixed: Fixed in tomorrow's ChimeraX daily build. The morph code incorrectly …
4:17 PM Ticket #7087 (Unknown problem) created by chimerax-bug-report@…
[…]
3:29 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:29 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:27 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:24 PM Dev2022-6-12 edited by Zach Pearson
(diff)
3:20 PM Dev2022-6-12 edited by Zach Pearson
(diff)
12:10 PM Ticket #7086 (AlphaFold results: File is not a zip file) closed by Tom Goddard
can't reproduce: ChimeraX got a message that the download of results.zip from an …
12:00 PM Dev2022-6-12 edited by Zach Pearson
(diff)
11:42 AM Dev2022-6-12 edited by Zach Pearson
(diff)
11:05 AM Ticket #7086 (AlphaFold results: File is not a zip file) created by chimerax-bug-report@…
[…]
10:22 AM Dev2022-6-12 edited by pett
(diff)
9:57 AM Ticket #7085 (NaN in surface calculation) created by ryan.kissinger1@…
[…]
9:26 AM Ticket #7083 (Dead pseudobond group) closed by pett
can't reproduce: This will be a lot easier to debug in 1.4
9:19 AM Ticket #7082 (Crash in event loop) closed by pett
can't reproduce
9:14 AM Ticket #7080 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:08 AM Ticket #7078 (Problem restoring clip caps when volume surface not restored) closed by pett
duplicate: Duplicate of #6265
8:56 AM Ticket #7084 (Crash in floating-point multiply) created by maru.jaimegarza@…
[…]
8:37 AM Ticket #7083 (Dead pseudobond group) created by chimerax-bug-report@…
[…]
7:48 AM Ticket #7082 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:42 AM Ticket #7081 (ChimeraX 1.4 is "downgrade") created by Tristan Croll
[…]

Jun 12, 2022:

11:41 PM Ticket #7080 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
11:05 PM Ticket #7079 (Crash checking toolshed) created by chimerax-bug-report@…
[…]
5:43 PM Ticket #7078 (Problem restoring clip caps when volume surface not restored) created by chimerax-bug-report@…
[…]
9:19 AM ChangeLog edited by Elaine Meng
(diff)

Jun 10, 2022:

6:32 PM Ticket #7077 (Remove distutils) created by Zach Pearson
It's probably enough to from setuptools import distutils in …
5:23 PM ChangeLog edited by Tom Goddard
(diff)
1:20 PM Ticket #7074 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
duplicate: Duplicate of #7072.
1:19 PM Ticket #7073 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
duplicate: Duplicate of #7072.
1:16 PM Ticket #7072 (Draw status bar: Attempt to retrieve context when no valid context) closed by Tom Goddard
can't reproduce: Looks like ChimeraX gave this error on startup trying to draw the …
1:11 PM Ticket #7076 (Registration: month not in months list) created by chimerax-bug-report@…
[…]
1:04 PM Ticket #7071 (Capturing thumbnail image: Attempt to retrieve context when no valid ...) closed by Tom Goddard
can't reproduce: Capturing an image made the graphics context current without errors, …
1:00 PM Ticket #7070 (Access violation drawing new frame in glBufferData() on Windows) closed by Tom Goddard
nonchimerax: OpenGL graphics driver crash in glBufferData() on old laptop with AMD …
10:43 AM Ticket #7068 (Crash in event loop) closed by pett
can't reproduce
8:03 AM Ticket #7075 (Crash saving atomic session state) created by jose.soto@…
[…]
6:47 AM Ticket #7074 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:47 AM Ticket #7073 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:40 AM Ticket #7072 (Draw status bar: Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
6:38 AM Ticket #7071 (Capturing thumbnail image: Attempt to retrieve context when no valid ...) created by chimerax-bug-report@…
[…]
4:57 AM Ticket #7070 (Access violation drawing new frame in glBufferData() on Windows) created by chimerax-bug-report@…
[…]
3:24 AM Ticket #7069 (Surface session restore: updaters is None) created by chimerax-bug-report@…
[…]
2:36 AM Ticket #7068 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:21 AM ChangeLog edited by Greg Couch
(diff)

Jun 9, 2022:

5:06 PM Ticket #7067 (Save dialog enhancement) created by jack.stevenson@…
[…] Screen Shot 2022-06-09 at 17.02.51.png
4:46 PM Ticket #7062 (Crash dragging/dropping on color panel) closed by pett
can't reproduce
4:44 PM Ticket #7061 (fork failure) closed by pett
nonchimerax: Was using 9.1GB
4:42 PM Ticket #7060 (Read pseudobonds: syntax error should not produce traceback) closed by pett
duplicate: Duplicate of #6531
4:36 PM NTTData edited by Tom Goddard
(diff)
4:35 PM NIAID2022 created by Tom Goddard
4:32 PM Dev2022-6-12 edited by Zach Pearson
(diff)
4:32 PM Dev2022-6-12 edited by Zach Pearson
(diff)
4:26 PM Ticket #7059 (Crash getting atomic session state) closed by pett
can't reproduce
4:09 PM Ticket #7066 (Douse tool enhancements) created by pett
- Default representation for 7rtb is sphere. To best see the …
3:54 PM ChangeLog edited by pett
(diff)
3:08 PM Ticket #7065 (Smarter display of Updates) created by pett
It would be good if the Updates tool only showed itself if updates are …
3:05 PM Ticket #7064 (Show bundle release notes in Updates) created by pett
It would be good to show the Release Notes section (multiple section …
2:38 PM 2022-6-9 edited by Tom Goddard
(diff)
2:35 PM 2022-6-9 edited by Tom Goddard
(diff)
2:35 PM 2022-6-9 edited by Tom Goddard
(diff)
2:00 PM NTTData edited by Elaine Meng
(diff)
1:59 PM NTTData edited by Elaine Meng
(diff)
1:54 PM Ticket #7063 (RFE: Decouple core and app version numbers) created by Zach Pearson
In the group meeting today Greg suggested having an RFE on this for …
1:39 PM NTTData edited by Elaine Meng
(diff)
12:38 PM Ticket #7062 (Crash dragging/dropping on color panel) created by chimerax-bug-report@…
[…]
12:26 PM Ticket #7061 (fork failure) created by chimerax-bug-report@…
[…]
9:55 AM Ticket #7058 (Deleted options still getting callbacks) closed by pett
duplicate
9:48 AM Ticket #7057 (Crash in event loop in SLSIsDisplayChangedSeedValid) closed by pett
can't reproduce
9:45 AM Ticket #7056 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
9:36 AM Ticket #7060 (Read pseudobonds: syntax error should not produce traceback) created by chimerax-bug-report@…
[…]
2:16 AM Ticket #7059 (Crash getting atomic session state) created by chimerax-bug-report@…
[…]
1:07 AM Ticket #7058 (Deleted options still getting callbacks) created by chimerax-bug-report@…
[…]
12:18 AM Ticket #7057 (Crash in event loop in SLSIsDisplayChangedSeedValid) created by chimerax-bug-report@…
[…]

Jun 8, 2022:

11:30 PM Ticket #7056 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
5:55 PM Ticket #7055 (AlphaFold database PAE fetch fails with lowercase uniprot id) closed by Tom Goddard
fixed: Fixed. Made uniprot id argument parsing always return upper case.
5:53 PM Ticket #7055 (AlphaFold database PAE fetch fails with lowercase uniprot id) created by goddard@…
[…]
4:20 PM Ticket #6621 (Show pseudobonds between all adjacent residues colored by AlphaFold ...) closed by Tom Goddard
fixed: I added a command to make the colored pseudobonds […] The …
1:00 PM Ticket #7053 (Session restore: invalid load key, '\x04') closed by pett
duplicate
12:25 PM Ticket #7054 (Deiconifying ChimeraX after help viewer deleted gives error) created by goddard@…
[…]
12:12 PM Ticket #7053 (Session restore: invalid load key, '\x04') created by chimerax-bug-report@…
[…]
10:59 AM Ticket #7052 (Crash opening PDB file) closed by pett
can't reproduce
10:50 AM Ticket #7052 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
10:05 AM Ticket #6837 (Have undocked tools forward keystrokes to command line) closed by pett
fixed: Well, sort of fixed. I re-enabled keystroke forwarding for …
9:10 AM Ticket #7044 (kerning) closed by pett
fixed: Excellent! --Eric
9:04 AM Ticket #7051 (Sequence viewer infinite recursion) closed by pett
can't reproduce
9:03 AM Ticket #7050 (Crash during color panel drag/drop) closed by pett
can't reproduce
9:00 AM Ticket #7049 (Crash in event loop) closed by pett
can't reproduce
8:58 AM Ticket #7048 (Crash in event loop) closed by pett
can't reproduce
8:43 AM Ticket #7047 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce
3:22 AM Ticket #7051 (Sequence viewer infinite recursion) created by chimerax-bug-report@…
[…]
2:51 AM Ticket #7050 (Crash during color panel drag/drop) created by chimerax-bug-report@…
[…]
2:10 AM Ticket #7049 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jun 7, 2022:

6:11 PM Ticket #7048 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:07 PM Ticket #7047 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
5:44 PM Ticket #7045 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: This error drawing the status line on an expose event has been …
5:35 PM Ticket #7046 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
5:31 PM Ticket #7046 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:07 PM Ticket #7045 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
1:28 PM Ticket #7044 (kerning) created by jack.stevenson@…
[…] Screen Shot 2022-06-07 at 13.27.04.png
11:33 AM ChangeLog edited by Elaine Meng
(diff)
10:14 AM Dev2022-6-16 created by Tom Goddard
10:14 AM Dev2022-6-12 created by Tom Goddard
10:12 AM 2022-6-9 created by Tom Goddard
10:11 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:18 AM Ticket #7043 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) closed by pett
duplicate: Hi Fadwa, Thanks for reporting this problem. It has been fixed in …
9:14 AM Ticket #7042 (Unknown crash) closed by pett
can't reproduce: Looks like a crash in the runtime loader. No Python traceback.
9:11 AM Ticket #7041 (Unknown crash) closed by pett
can't reproduce: Looks like the process was forking and was already at 9GB
9:08 AM Ticket #7040 (multiprocessing) closed by pett
not a bug: Hi Shubham, What you are trying to do will not work because creating …
8:52 AM Ticket #7039 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:50 AM Ticket #7038 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:48 AM Ticket #7037 (Crash in event loop) closed by pett
can't reproduce
6:40 AM Ticket #7043 (Destroying status bar: wrapped C/C++ object of type QScreen has been ...) created by fatmaouf@…
[…] log_chimeraXerror.txt
5:39 AM Ticket #7042 (Unknown crash) created by chimerax-bug-report@…
[…]
5:09 AM Ticket #7041 (Unknown crash) created by chimerax-bug-report@…
[…]
4:48 AM Ticket #7040 (multiprocessing) created by sdramgoo@…
[…]
3:59 AM Ticket #7039 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Jun 6, 2022:

10:27 PM Ticket #7038 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
8:31 PM Ticket #7037 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:49 PM ChangeLog edited by Elaine Meng
(diff)
6:45 PM ChangeLog edited by Elaine Meng
(diff)
6:42 PM Ticket #7025 (Attempt to log command for deleted bond rotation) closed by Tom Goddard
fixed: Fixed. The traceback was from closing the session while rotating a …
5:16 PM Ticket #5991 (cross-eyed stereo) closed by Tom Goddard
fixed: Done. Added in daily build, not in ChimeraX 1.4. Added "camera …
4:26 PM Ticket #7036 (Add surface invert command) closed by Tom Goddard
fixed: Added surface invertShown command.
4:25 PM Ticket #7036 (Add surface invert command) created by xdai@…
Port surface invert shown command from Chimera to ChimeraX. This is …
4:09 PM Dev2022-6-6 edited by Tom Goddard
(diff)
1:57 PM Ticket #7035 (Docked sequence viewer panels made main window 16000 pixels high) created by chimerax-bug-report@…
[…]
12:08 PM Dev2022-6-6 edited by Zach Pearson
(diff)
11:30 AM Ticket #7033 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: Hi Michael, Thanks for reporting this problem. We believe it is …
11:26 AM Ticket #7032 (Unknown crash) closed by pett
can't reproduce
11:23 AM Ticket #7031 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:21 AM Ticket #7030 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:19 AM Ticket #7028 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:12 AM Ticket #7027 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
11:11 AM Ticket #7026 (No space left on device) closed by pett
nonchimerax
11:02 AM Ticket #7024 (Crash in Residue::ordered_min_backbone_atom_names()) closed by pett
can't reproduce: Would really need the PDB file in order to track this down.
8:38 AM Ticket #7034 (Preview Toolshed down) created by Tristan Croll
[…]
7:47 AM Ticket #7033 (Crash using File→Open on Windows and/or in return statement) created by weberm@…
[…]
7:36 AM Ticket #7032 (Unknown crash) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #7031 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:16 AM Ticket #7030 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:12 AM Ticket #6996 (OpenMMException: Error uploading array TabulatedFunction) closed by Tristan Croll
duplicate: Ancient low-end GPU ran out of memory. Keeping related ticket #6998
4:06 AM Ticket #6999 (OpenMMException: Error uploading array TabulatedFunction) closed by Tristan Croll
limitation: Hi Dennis, I'm afraid the problem here is that your hardware is simply …

Jun 5, 2022:

7:25 PM Ticket #7028 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:04 PM Ticket #7027 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #7026 (No space left on device) created by chimerax-bug-report@…
[…]

Jun 4, 2022:

7:48 PM Ticket #7025 (Attempt to log command for deleted bond rotation) created by chimerax-bug-report@…
[…]
5:24 AM Ticket #7024 (Crash in Residue::ordered_min_backbone_atom_names()) created by chimerax-bug-report@…
[…]

Jun 3, 2022:

5:48 PM Ticket #7023 (Graphics crash, macOS 11.6.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
4:43 PM ChangeLog edited by Elaine Meng
(diff)
4:40 PM Ticket #7019 (Save tool position: TypeError: int() argument must be a string, a ...) closed by pett
fixed
1:53 PM Milestone 1.4 completed
== New Features == * Compute charges: A command to calculate and …
12:30 PM Ticket #7023 (Graphics crash, macOS 11.6.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
11:47 AM Ticket #7022 (Crash using File→Open on Windows) closed by pett
can't reproduce: 1.3
11:35 AM Ticket #7022 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
11:18 AM Ticket #7021 (Save TIFF, not TIFF stack) closed by pett
not a bug: Hi Jing, In order to save a TIFF image you have to select "TIFF …
10:16 AM Ticket #7002 (GL.glActiveTexture(): access violation) closed by Tom Goddard
can't reproduce: Looks like a graphics driver crash in bind_texture() on RTX 3070 Ti on …
9:43 AM Ticket #7014 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
9:37 AM Ticket #7012 (No space left on device) closed by pett
nonchimerax
9:31 AM Ticket #7011 (Crash in event loop) closed by pett
can't reproduce
9:02 AM Ticket #7005 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:59 AM Ticket #7004 (Crash in event loop) closed by pett
can't reproduce: 1.2.5
8:56 AM Ticket #7003 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
8:14 AM Ticket #7021 (Save TIFF, not TIFF stack) created by jing.16.liu@…
[…]
6:26 AM Ticket #7020 (Crash generating UUID) created by chimerax-bug-report@…
[…]

Jun 2, 2022:

11:59 PM Ticket #7019 (Save tool position: TypeError: int() argument must be a string, a ...) created by goddard@…
[…]
11:48 PM Ticket #6991 (self._positions is None after model ID changed and closed) closed by Tom Goddard
fixed: Fixed. Made volume code that closes volume surfaces do it correctly …
11:01 PM Ticket #7001 (Crash in event loop after labeling) closed by Tom Goddard
can't reproduce: Not clear that the event loop crash had anything to do with the last …
10:15 PM Ticket #7018 (Port "surface transform" command to scale surfaces) closed by Tom Goddard
fixed: Done. Added "surface transform" command to ChimeraX daily builds, not …
10:13 PM Ticket #7018 (Port "surface transform" command to scale surfaces) created by mpm896@…
Begin forwarded message: From: "Martinez, Matthew via ChimeraX-users" …
6:26 PM Ticket #7000 (Crash in event loop after session opened) closed by pett
can't reproduce
6:19 PM Ticket #6997 (OpenMMException: Error uploading array TabulatedFunction) closed by pett
duplicate
6:15 PM Ticket #6995 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
6:13 PM Ticket #6994 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
6:11 PM Ticket #6993 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by pett
duplicate
6:09 PM Ticket #7017 (networkx: no libbz2) created by murpholinox@…
[…]
5:46 PM Ticket #6990 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
2:01 PM Ticket #7016 (RFE: alignment for medical images (DICOM etc.)) created by Elaine Meng
Are there quick methods that can be applied to overlay two medical …
1:36 PM DeveloperMeetings edited by Zach Pearson
(diff)
1:36 PM Dev2022-6-6 created by Zach Pearson
1:35 PM Dev2022-6-2 edited by Zach Pearson
(diff)
1:30 PM Ticket #7015 (DICOM: was "airways" preset always so dim?) created by Elaine Meng
I wonder if something changed with the airways preset (from clicking …
1:27 PM Ticket #7014 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
12:38 PM Ticket #7013 (DICOM: RTSTRUCT not within the proper study in models hierarchy) created by Elaine Meng
For Head-Neck Cetuximab collection, patient ID 0522c0027, there are 3 …
12:26 PM 2022-6-2 edited by Tom Goddard
(diff)
8:24 AM Ticket #7012 (No space left on device) created by chimerax-bug-report@…
[…]
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