Crash in event loop

[cco121@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted

Thread 0x00000654 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00000a5c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003990 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000031dc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004b64 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000023cc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000462c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000041cc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001330 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004968 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001ae4 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Current thread 0x000047d0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:/Users/catha/Downloads/Docked (1)-20220622T181637Z-001.zip"

Unrecognized file suffix '.zip'  

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/ActivesiteSesh.cxs"

opened ChimeraX session  

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/B0F4G4_Session.cxs"

opened ChimeraX session  

> select #1.1/A:345@CB

1 atom, 1 residue, 1 model selected  

> select #1.1/A:345@CG

1 atom, 1 residue, 1 model selected  

> select add #1.1/A:458@SD

2 atoms, 2 residues, 2 models selected  

> select add #1.1/A:345@OD1

3 atoms, 2 residues, 2 models selected  

> select subtract #1.1/A:345@OD1

2 atoms, 2 residues, 2 models selected  

> select add #1.1/A:458@CE

3 atoms, 2 residues, 2 models selected  

> select add #1.1/A:345@OD1

4 atoms, 2 residues, 2 models selected  

> select add #1.1/A:348@CD1

5 atoms, 3 residues, 2 models selected  

> select subtract #1.1/A:348@CD1

4 atoms, 2 residues, 2 models selected  

> select add #1.1/A:324@CD1

5 atoms, 3 residues, 2 models selected  

> select add #1.1/A:324@CG

6 atoms, 3 residues, 2 models selected  

> select add #1.1/A:345@ND2

7 atoms, 3 residues, 2 models selected  

> select add #1.1/A:345@HB3

8 atoms, 3 residues, 2 models selected  

> select add #1.1/A:345@CB

9 atoms, 3 residues, 2 models selected  

> select add #1.1/A:345@HA

10 atoms, 3 residues, 2 models selected  

> select add #1.1/A:324@CZ2

11 atoms, 3 residues, 2 models selected  

> select add #1.1/A:324@NE1

12 atoms, 3 residues, 2 models selected  

> select add #1.1/A:324@CE2

13 atoms, 3 residues, 2 models selected  

> select add #1.1/A:324@CE3

14 atoms, 3 residues, 2 models selected  

> select add #1.1/A:324@CH2

15 atoms, 3 residues, 2 models selected  

> select add #1.1/A:324@CD2

16 atoms, 3 residues, 2 models selected  

> select add #1.1/A:492@CD1

17 atoms, 4 residues, 2 models selected  

> select add #1.1/A:324@CZ3

18 atoms, 4 residues, 2 models selected  

> select add #1.1/A:458@HE2

19 atoms, 4 residues, 2 models selected  

> select add #1.1/A:565@CD1

20 atoms, 5 residues, 2 models selected  

> select add #1.1/A:579@CE1

21 atoms, 6 residues, 2 models selected  

> select add #1.1/A:579@ND1

22 atoms, 6 residues, 2 models selected  

> select add #1.1/A:579@CG

23 atoms, 6 residues, 2 models selected  

> select add #1.1/A:573@OH

24 atoms, 7 residues, 2 models selected  

> select add #1.1/A:496@OD2

25 atoms, 8 residues, 2 models selected  

> select add #1.1/A:573@HH

26 atoms, 8 residues, 2 models selected  

> select add #1.1/A:577@OD1

27 atoms, 9 residues, 2 models selected  

> select add #1.1/A:579@CD2

28 atoms, 9 residues, 2 models selected  

> select add #1.1/A:573@HE1

29 atoms, 9 residues, 2 models selected  

> select add #1.1/A:579@HB3

30 atoms, 9 residues, 2 models selected  

> select add #1.1/A:573@CE1

31 atoms, 9 residues, 2 models selected  

> select add #1.1/A:579@CB

32 atoms, 9 residues, 2 models selected  

> select add #1.1/A:345@O

33 atoms, 9 residues, 2 models selected  

> select add #1.1/A:345@CA

34 atoms, 9 residues, 2 models selected  

> select add #1.1/A:348@CD1

35 atoms, 10 residues, 2 models selected  

> select add #1.1/A:348@CG2

36 atoms, 10 residues, 2 models selected  

> select add #1.1/A:348@HG22

37 atoms, 10 residues, 2 models selected  

> select add #1.1/A:348@HB

38 atoms, 10 residues, 2 models selected  

> select add #1.1/A:348@CB

39 atoms, 10 residues, 2 models selected  

> select add #1.1/A:454@OG

40 atoms, 11 residues, 2 models selected  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\ActivesiteSesh.cxs" format session

opened ChimeraX session  

> select add #1.1/A:492@CD1

2 atoms, 2 residues, 1 model selected  

> select subtract #1.1/A:492@CD1

1 atom, 1 residue, 2 models selected  

> select add #1.1/A:324@CZ3

2 atoms, 1 residue, 2 models selected  

> select add #1.1/A:492@CD1

3 atoms, 2 residues, 2 models selected  

> select add #1.1/A:492@HD12

4 atoms, 2 residues, 2 models selected  

> select add #1.1/A:492@HD22

5 atoms, 2 residues, 2 models selected  

> select add #1.1/A:565@CD1

6 atoms, 3 residues, 2 models selected  

> select add #1.1/A:492@CD2

7 atoms, 3 residues, 2 models selected  

> select add #1.1/A:458@SD

8 atoms, 4 residues, 2 models selected  

> select add #1.1/A:458@CE

9 atoms, 4 residues, 2 models selected  

> select add #1.1/A:458@HE2

10 atoms, 4 residues, 2 models selected  

> select add #1.1/A:324@CD2

11 atoms, 4 residues, 2 models selected  

> select add #1.1/A:324@CG

12 atoms, 4 residues, 2 models selected  

> select add #1.1/A:324@NE1

13 atoms, 4 residues, 2 models selected  

> select subtract #1.1/A:324@CZ3

12 atoms, 4 residues, 2 models selected  

> select add #1.1/A:324@CZ3

13 atoms, 4 residues, 2 models selected  

> select add #1.1/A:324@CZ2

14 atoms, 4 residues, 2 models selected  

> select add #1.1/A:324@CH2

15 atoms, 4 residues, 2 models selected  

> select add #1.1/A:573@OH

16 atoms, 5 residues, 2 models selected  

> select add #1.1/A:573@HH

17 atoms, 5 residues, 2 models selected  

> select add #1.1/A:500@CG2

18 atoms, 6 residues, 2 models selected  

> select add #1.1/A:573@HE1

19 atoms, 6 residues, 2 models selected  

> select add #1.1/A:496@OD2

20 atoms, 7 residues, 2 models selected  

> select add #1.1/A:573@CE1

21 atoms, 7 residues, 2 models selected  

> select add #1.1/A:500@HG23

22 atoms, 7 residues, 2 models selected  

> select add #1.1/A:324@CE2

23 atoms, 7 residues, 2 models selected  

> select add #1.1/A:579@CG

24 atoms, 8 residues, 2 models selected  

> select add #1.1/A:579@CE1

25 atoms, 8 residues, 2 models selected  

> select add #1.1/A:324@CD1

26 atoms, 8 residues, 2 models selected  

> select add #1.1/A:579@ND1

27 atoms, 8 residues, 2 models selected  

> select add #1.1/A:579@CD2

28 atoms, 8 residues, 2 models selected  

> select add #1.1/A:349@OG1

29 atoms, 9 residues, 2 models selected  

> select add #1.1/A:579@NE2

30 atoms, 9 residues, 2 models selected  

> select subtract #1.1/A:500@CG2

29 atoms, 9 residues, 2 models selected  

> select add #1.1/A:500@CG2

30 atoms, 9 residues, 2 models selected  

> select add #1.1/A:577@OD1

31 atoms, 10 residues, 2 models selected  

> select add #1.1/A:579@HB3

32 atoms, 10 residues, 2 models selected  

> select add #1.1/A:577@CB

33 atoms, 10 residues, 2 models selected  

> select add #1.1/A:577@OD2

34 atoms, 10 residues, 2 models selected  

> select add #1.1/A:577@CG

35 atoms, 10 residues, 2 models selected  

> select add #1.1/A:579@CB

36 atoms, 10 residues, 2 models selected  

> select add #1.1/A:579@HD2

37 atoms, 10 residues, 2 models selected  

> select add #1.1/A:315@CZ

38 atoms, 11 residues, 2 models selected  

> select add #1.1/A:349@HA

39 atoms, 11 residues, 2 models selected  

> select add #1.1/A:349@CG2

40 atoms, 11 residues, 2 models selected  

> select add #1.1/A:315@NH2

41 atoms, 11 residues, 2 models selected  

> select add #1.1/A:349@HG23

42 atoms, 11 residues, 2 models selected  

> select subtract #1.1/A:579@NE2

41 atoms, 11 residues, 2 models selected  

> select add #1.1/A:579@NE2

42 atoms, 11 residues, 2 models selected  

> select add #1.1/A:579@HE2

43 atoms, 11 residues, 2 models selected  

> select add #1.1/A:315@NH1

44 atoms, 11 residues, 2 models selected  

> select add #1.1/A:349@CA

45 atoms, 11 residues, 2 models selected  

> select add #1.1/A:349@CB

46 atoms, 11 residues, 2 models selected  

> select add #1.1/A:345@O

47 atoms, 12 residues, 2 models selected  

> select add #1.1/A:348@CG2

48 atoms, 13 residues, 2 models selected  

> select add #1.1/A:348@HG23

49 atoms, 13 residues, 2 models selected  

> select add #1.1/A:349@N

50 atoms, 13 residues, 2 models selected  

> select add #1.1/A:348@HB

51 atoms, 13 residues, 2 models selected  

> select add #1.1/A:348@CB

52 atoms, 13 residues, 2 models selected  

> select subtract #1.1/A:348@CB

51 atoms, 13 residues, 2 models selected  

> select add #1.1/A:348@CD1

52 atoms, 13 residues, 2 models selected  

> select add #1.1/A:348@CB

53 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@CA

54 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@HA

55 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@CG

56 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@OD1

57 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@HB3

58 atoms, 13 residues, 2 models selected  

> select subtract #1.1/A:345@HB3

57 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@HB3

58 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@CB

59 atoms, 13 residues, 2 models selected  

> select add #1.1/A:345@C

60 atoms, 13 residues, 2 models selected  

> select add #1.1/A:321@SG

61 atoms, 14 residues, 2 models selected  

> select add #1.1/A:345@ND2

62 atoms, 14 residues, 2 models selected  

> select add #1.1/A:454@OG

63 atoms, 15 residues, 2 models selected  

> select add #1.1/A:348@HG22

64 atoms, 15 residues, 2 models selected  

> select add #1.1/A:453@O

65 atoms, 16 residues, 2 models selected  

> select add #1.1/A:454@HG

66 atoms, 16 residues, 2 models selected  

> select add #1.1/A:453@C

67 atoms, 16 residues, 2 models selected  

> select add #1.1/A:454@CB

68 atoms, 16 residues, 2 models selected  

> select add #1.1/A:427@OH

69 atoms, 17 residues, 2 models selected  

> select add #1.1/A:452@O

70 atoms, 18 residues, 2 models selected  

> select add #1.1/A:453@CG1

71 atoms, 18 residues, 2 models selected  

> select add #1.1/A:453@HG13

72 atoms, 18 residues, 2 models selected  

> select add #1.1/A:453@CD1

73 atoms, 18 residues, 2 models selected  

> select add #1.1/A:453@HA

74 atoms, 18 residues, 2 models selected  

> select add #1.1/A:493@NH2

75 atoms, 19 residues, 2 models selected  

> select subtract #1.1/A:453@HA

74 atoms, 19 residues, 2 models selected  

> select add #1.1/A:453@HA

75 atoms, 19 residues, 2 models selected  

> select add #1.1/A:453@HD13

76 atoms, 19 residues, 2 models selected  

> select add #1.1/A:453@CA

77 atoms, 19 residues, 2 models selected  

> select add #1.1/A:453@HD12

78 atoms, 19 residues, 2 models selected  

> select add #1.1/A:492@CG

79 atoms, 19 residues, 2 models selected  

> select add #1.1/A:493@HH21

80 atoms, 19 residues, 2 models selected  

> select add #1.1/A:496@OD1

81 atoms, 19 residues, 2 models selected  

> select add #1.1/A:493@NH1

82 atoms, 19 residues, 2 models selected  

> select add #1.1/A:496@CG

83 atoms, 19 residues, 2 models selected  

> select add #1.1/A:493@HH11

84 atoms, 19 residues, 2 models selected  

> select add #1.1/A:500@O

85 atoms, 19 residues, 2 models selected  

> select add #1.1/A:500@HB

86 atoms, 19 residues, 2 models selected  

> select add #1.1/A:504@OE1

87 atoms, 20 residues, 2 models selected  

> select subtract #1.1/A:500@HB

86 atoms, 20 residues, 2 models selected  

> select add #1.1/A:500@HB

87 atoms, 20 residues, 2 models selected  

> select add #1.1/A:500@CA

88 atoms, 20 residues, 2 models selected  

> select add #1.1/A:500@CB

89 atoms, 20 residues, 2 models selected  

> select add #1.1/A:500@HA

90 atoms, 20 residues, 2 models selected  

> select add #1.1/A:504@HG3

91 atoms, 20 residues, 2 models selected  

> select add #1.1/A:504@CG

92 atoms, 20 residues, 2 models selected  

> select add #1.1/A:503@CB

93 atoms, 21 residues, 2 models selected  

> select add #1.1/A:503@HB3

94 atoms, 21 residues, 2 models selected  

> select add #1.1/A:504@N

95 atoms, 21 residues, 2 models selected  

> select add #1.1/A:507@NH2

96 atoms, 22 residues, 2 models selected  

> select add #1.1/A:507@HH22

97 atoms, 22 residues, 2 models selected  

> select add #1.1/A:504@CD

98 atoms, 22 residues, 2 models selected  

> select add #1.1/A:504@OE2

99 atoms, 22 residues, 2 models selected  

> select add #1.1/A:512@HZ2

100 atoms, 23 residues, 2 models selected  

> select add #1.1/A:512@NZ

101 atoms, 23 residues, 2 models selected  

> select add #1.1/A:509@OD2

102 atoms, 24 residues, 2 models selected  

> select add #1.1/A:512@HZ3

103 atoms, 24 residues, 2 models selected  

> select add #1.1/A:315@HH11

104 atoms, 24 residues, 2 models selected  

> select add #1.1/A:580@N

105 atoms, 25 residues, 2 models selected  

> select add #1.1/A:580@CA

106 atoms, 25 residues, 2 models selected  

> select add #1.1/A:315@HH12

107 atoms, 25 residues, 2 models selected  

> select add #1.1/A:352@CG

108 atoms, 26 residues, 2 models selected  

> select add #1.1/A:352@OD2

109 atoms, 26 residues, 2 models selected  

> select add #1.1/A:315@HH21

110 atoms, 26 residues, 2 models selected  

> select add #1.1/A:352@CB

111 atoms, 26 residues, 2 models selected  

> select add #1.1/A:348@C

112 atoms, 26 residues, 2 models selected  

> select add #1.1/A:352@OD1

113 atoms, 26 residues, 2 models selected  

> select add #1.1/A:427@HE1

114 atoms, 26 residues, 2 models selected  

> select add #1.1/A:427@CE1

115 atoms, 26 residues, 2 models selected  

> select add #1.1/A:427@HD1

116 atoms, 26 residues, 2 models selected  

> select add #1.1/A:427@CD1

117 atoms, 26 residues, 2 models selected  

> select add #1.1/A:452@CB

118 atoms, 26 residues, 2 models selected  

> select add #1.1/A:452@HB2

119 atoms, 26 residues, 2 models selected  

> select add #1.1/A:452@C

120 atoms, 26 residues, 2 models selected  

> select add #1.1/A:430@OE2

121 atoms, 27 residues, 2 models selected  

> select add #1.1/A:452@OG

122 atoms, 27 residues, 2 models selected  

> select add #1.1/A:509@OD1

123 atoms, 27 residues, 2 models selected  

> select add #1.1/A:510@CG1

124 atoms, 28 residues, 2 models selected  

> select add #1.1/A:430@HB2

125 atoms, 28 residues, 2 models selected  

> select add #1.1/A:430@CB

126 atoms, 28 residues, 2 models selected  

> select add #1.1/A:430@HB3

127 atoms, 28 residues, 2 models selected  

> select add #1.1/A:427@CA

128 atoms, 28 residues, 2 models selected  

> select add #1.1/A:431@N

129 atoms, 29 residues, 2 models selected  

> select add #1.1/A:427@O

130 atoms, 29 residues, 2 models selected  

> select add #1.1/A:431@CB

131 atoms, 29 residues, 2 models selected  

> select add #1.1/A:431@CA

132 atoms, 29 residues, 2 models selected  

> select add #1.1/A:430@O

133 atoms, 29 residues, 2 models selected  

> select add #1.1/A:430@C

134 atoms, 29 residues, 2 models selected  

> select add #1.1/A:427@HA

135 atoms, 29 residues, 2 models selected  

> select add #1.1/A:510@HB

136 atoms, 29 residues, 2 models selected  

> select add #1.1/A:434@HB3

137 atoms, 30 residues, 2 models selected  

> select add #1.1/A:510@CB

138 atoms, 30 residues, 2 models selected  

> select subtract #1.1/A:434@HB3

137 atoms, 29 residues, 2 models selected  

> select add #1.1/A:434@HB3

138 atoms, 30 residues, 2 models selected  

> select add #1.1/A:434@CB

139 atoms, 30 residues, 2 models selected  

> select add #1.1/A:431@HA

140 atoms, 30 residues, 2 models selected  

> select add #1.1/A:431@HB3

141 atoms, 30 residues, 2 models selected  

> select add #1.1/A:355@HB2

142 atoms, 31 residues, 2 models selected  

> select add #1.1/A:355@CB

143 atoms, 31 residues, 2 models selected  

> select add #1.1/A:427@CB

144 atoms, 31 residues, 2 models selected  

> select add #1.1/A:356@N

145 atoms, 32 residues, 2 models selected  

> select add #1.1/A:355@O

146 atoms, 32 residues, 2 models selected  

> select add #1.1/A:355@C

147 atoms, 32 residues, 2 models selected  

> select add #1.1/A:356@OD2

148 atoms, 32 residues, 2 models selected  

> select add #1.1/A:356@CB

149 atoms, 32 residues, 2 models selected  

> select add #1.1/A:356@HB3

150 atoms, 32 residues, 2 models selected  

> select add #1.1/A:356@CG

151 atoms, 32 residues, 2 models selected  

> select add #1.1/A:352@O

152 atoms, 32 residues, 2 models selected  

> select add #1.1/A:356@HA

153 atoms, 32 residues, 2 models selected  

> select subtract #1.1/A:356@HA

152 atoms, 32 residues, 2 models selected  

> select add #1.1/A:356@HA

153 atoms, 32 residues, 2 models selected  

> select add #1.1/A:356@CA

154 atoms, 32 residues, 2 models selected  

> select add #1.1/A:580@HA2

155 atoms, 32 residues, 2 models selected  

> name frozen "Active site" sel

registering illegal selector name "Active site"  

> name frozen "Active site" sel

registering illegal selector name "Active site"  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> hide sel atoms

> show sel cartoons

> show sel atoms

> select #1.1/A:356

12 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

377 atoms, 378 bonds, 24 residues, 2 models selected  

> select up

8603 atoms, 8710 bonds, 530 residues, 2 models selected  

> select up

8603 atoms, 8710 bonds, 530 residues, 2 models selected  

> select up

8625 atoms, 8731 bonds, 531 residues, 3 models selected  

> select up

8625 atoms, 8731 bonds, 531 residues, 4 models selected  

> select up

8625 atoms, 8731 bonds, 531 residues, 4 models selected  

> undo

> select
> #1.1/A:315,321,324,345,348-349,352,355-356,427,430-431,434,452-454,458,492-493,496,500,503-504,507,509-510,512,565,573,577,579-580

525 atoms, 509 bonds, 32 residues, 1 model selected  

> select
> #1.1/A:315,321,324,345,348-349,352,355-356,427,430-431,434,452-454,458,492-493,496,500,503-504,507,509-510,512,565,573,577,579-580

525 atoms, 509 bonds, 32 residues, 1 model selected  

> select
> #1.1/A:315,321,324,345,348-349,352,355-356,427,430-431,434,452-454,458,492-493,496,500,503-504,507,509-510,512,565,573,577,579-580

525 atoms, 509 bonds, 32 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> undo

> select
> #1.1/A:315,321,324,345,348-349,352,355-356,427,430-431,434,452-454,458,492-493,496,500,503-504,507,509-510,512,565,573,577,579-580

525 atoms, 509 bonds, 32 residues, 1 model selected  

> select
> #1.1/A:315,321,324,345,348-349,352,355-356,427,430-431,434,452-454,458,492-493,496,500,503-504,507,509-510,512,565,573,577,579-580

525 atoms, 509 bonds, 32 residues, 1 model selected  

> select
> #1.1/A:315,321,324,345,348-349,352,355-356,427,430-431,434,452-454,458,492-493,496,500,503-504,507,509-510,512,565,573,577,579-580

525 atoms, 509 bonds, 32 residues, 1 model selected  

> select
> #1.1/A:315,321,324,345,348-349,352,355-356,427,430-431,434,452-454,458,492-493,496,500,503-504,507,509-510,512,565,573,577,579-580

525 atoms, 509 bonds, 32 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> undo

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4_Session.cxs" format session

opened ChimeraX session  

> select subtract #1.1/A:493@NH1

8602 atoms, 8710 bonds, 530 residues, 1 model selected  

> select subtract #1.1/A:453@CD1

8601 atoms, 8710 bonds, 530 residues, 2 models selected  

> select clear

> select add #1.1/A:492@CD1

1 atom, 1 residue, 1 model selected  

> select #1.1/A:70-599

8603 atoms, 8710 bonds, 530 residues, 1 model selected  

> select clear

> select #1.1/A:144

22 atoms, 21 bonds, 1 residue, 1 model selected  

> select #1.1/A:144-146

50 atoms, 50 bonds, 3 residues, 1 model selected  

> select #1.1/A:144-146,179-181

106 atoms, 106 bonds, 6 residues, 1 model selected  

> select #1.1/A:144-146,179-181

106 atoms, 106 bonds, 6 residues, 1 model selected  

> select #1.1/A:144-146,179-181

106 atoms, 106 bonds, 6 residues, 1 model selected  

> select #1.1/A:143-147,179-181

139 atoms, 140 bonds, 8 residues, 1 model selected  

> select #1.1/A:143-147,179-181,281-286

241 atoms, 241 bonds, 14 residues, 1 model selected  

> select #1.1/A:143-147,179-181,246-254,281-286

411 atoms, 414 bonds, 23 residues, 1 model selected  

> select #1.1/A:143-147,179-181,186-227,246-254,281-286

1075 atoms, 1082 bonds, 65 residues, 1 model selected  

> show sel atoms

> select #1.1/A:286

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select #1.1/A:284-286

52 atoms, 51 bonds, 3 residues, 1 model selected  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4_Session.cxs" format session

opened ChimeraX session  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\ActivesiteSesh.cxs" format session

opened ChimeraX session  

> select add #1.1/A:509@OD1

2 atoms, 2 residues, 1 model selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> select add #1.1/A:324@NE1

3 atoms, 2 residues, 2 models selected  

> select add #1.1/A:324@CZ3

4 atoms, 2 residues, 2 models selected  

> select up

36 atoms, 36 bonds, 2 residues, 2 models selected  

> select add #1.1/A:579@NE2

37 atoms, 36 bonds, 3 residues, 2 models selected  

> select add #1.1/A:579@CG

38 atoms, 36 bonds, 3 residues, 2 models selected  

> select add #1.1/A:579@CE1

39 atoms, 36 bonds, 3 residues, 2 models selected  

> select add #1.1/A:579@ND1

40 atoms, 36 bonds, 3 residues, 2 models selected  

> select add #1.1/A:580@N

41 atoms, 36 bonds, 4 residues, 2 models selected  

> select add #1.1/A:315@NH1

42 atoms, 36 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@CD2

43 atoms, 36 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@HD2

44 atoms, 36 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@HB3

45 atoms, 36 bonds, 5 residues, 2 models selected  

> select add #1.1/A:577@OD1

46 atoms, 36 bonds, 6 residues, 2 models selected  

> select subtract #1.1/A:579@HB3

45 atoms, 36 bonds, 6 residues, 2 models selected  

> select add #1.1/A:579@HB3

46 atoms, 36 bonds, 6 residues, 2 models selected  

> select add #1.1/A:573@OH

47 atoms, 36 bonds, 7 residues, 2 models selected  

> select add #1.1/A:579@CB

48 atoms, 36 bonds, 7 residues, 2 models selected  

> select add #1.1/A:577@OD2

49 atoms, 36 bonds, 7 residues, 2 models selected  

> select add #1.1/A:577@CG

50 atoms, 36 bonds, 7 residues, 2 models selected  

> select add #1.1/A:577@CB

51 atoms, 36 bonds, 7 residues, 2 models selected  

> select add #1.1/A:573@HE1

52 atoms, 36 bonds, 7 residues, 2 models selected  

> select add #1.1/A:573@CE1

53 atoms, 36 bonds, 7 residues, 2 models selected  

> select add #1.1/A:500@CG2

54 atoms, 36 bonds, 8 residues, 2 models selected  

> select add #1.1/A:500@CB

55 atoms, 36 bonds, 8 residues, 2 models selected  

> select add #1.1/A:504@OE1

56 atoms, 36 bonds, 9 residues, 2 models selected  

> select add #1.1/A:496@OD2

57 atoms, 36 bonds, 10 residues, 2 models selected  

> select add #1.1/A:500@HG23

58 atoms, 36 bonds, 10 residues, 2 models selected  

> select subtract #1.1/A:496@OD2

57 atoms, 36 bonds, 9 residues, 2 models selected  

> select add #1.1/A:493@NH2

58 atoms, 36 bonds, 10 residues, 2 models selected  

> select add #1.1/A:493@HH21

59 atoms, 36 bonds, 10 residues, 2 models selected  

> select add #1.1/A:493@HH11

60 atoms, 36 bonds, 10 residues, 2 models selected  

> select add #1.1/A:493@NH1

61 atoms, 36 bonds, 10 residues, 2 models selected  

> select add #1.1/A:496@OD1

62 atoms, 36 bonds, 11 residues, 2 models selected  

> select add #1.1/A:496@OD2

63 atoms, 36 bonds, 11 residues, 2 models selected  

> select subtract #1.1/A:573@OH

62 atoms, 36 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@CD1

63 atoms, 36 bonds, 12 residues, 2 models selected  

> select add #1.1/A:496@CG

64 atoms, 36 bonds, 12 residues, 2 models selected  

> select add #1.1/A:573@OH

65 atoms, 36 bonds, 12 residues, 2 models selected  

> select add #1.1/A:573@HH

66 atoms, 36 bonds, 12 residues, 2 models selected  

> select add #1.1/A:453@HD12

67 atoms, 36 bonds, 12 residues, 2 models selected  

> select add #1.1/A:492@CD1

68 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:492@HD12

69 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:492@CD2

70 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:492@HD22

71 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:492@CG

72 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:453@HD13

73 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:453@CA

74 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:453@HA

75 atoms, 36 bonds, 13 residues, 2 models selected  

> select add #1.1/A:454@HG

76 atoms, 36 bonds, 14 residues, 2 models selected  

> select add #1.1/A:453@O

77 atoms, 36 bonds, 14 residues, 2 models selected  

> select add #1.1/A:453@C

78 atoms, 36 bonds, 14 residues, 2 models selected  

> select add #1.1/A:453@HG13

79 atoms, 36 bonds, 14 residues, 2 models selected  

> select add #1.1/A:453@CG1

80 atoms, 36 bonds, 14 residues, 2 models selected  

> select add #1.1/A:427@HE1

81 atoms, 36 bonds, 15 residues, 2 models selected  

> select add #1.1/A:452@O

82 atoms, 36 bonds, 16 residues, 2 models selected  

> select add #1.1/A:427@OH

83 atoms, 36 bonds, 16 residues, 2 models selected  

> select subtract #1.1/A:427@OH

82 atoms, 36 bonds, 16 residues, 2 models selected  

> select add #1.1/A:348@CG2

83 atoms, 36 bonds, 17 residues, 2 models selected  

> select add #1.1/A:427@OH

84 atoms, 36 bonds, 17 residues, 2 models selected  

> select add #1.1/A:454@OG

85 atoms, 36 bonds, 17 residues, 2 models selected  

> select add #1.1/A:454@CB

86 atoms, 36 bonds, 17 residues, 2 models selected  

> select add #1.1/A:348@HG22

87 atoms, 36 bonds, 17 residues, 2 models selected  

> select add #1.1/A:348@CD1

88 atoms, 36 bonds, 17 residues, 2 models selected  

> select add #1.1/A:345@CA

89 atoms, 36 bonds, 18 residues, 2 models selected  

> select add #1.1/A:345@CG

90 atoms, 36 bonds, 18 residues, 2 models selected  

> select add #1.1/A:345@HA

91 atoms, 36 bonds, 18 residues, 2 models selected  

> select add #1.1/A:345@OD1

92 atoms, 36 bonds, 18 residues, 2 models selected  

> select add #1.1/A:458@SD

93 atoms, 36 bonds, 19 residues, 2 models selected  

> select add #1.1/A:458@HE2

94 atoms, 36 bonds, 19 residues, 2 models selected  

> select add #1.1/A:458@CE

95 atoms, 36 bonds, 19 residues, 2 models selected  

> select add #1.1/A:565@CD1

96 atoms, 36 bonds, 20 residues, 2 models selected  

> select add #1.1/A:345@CB

97 atoms, 36 bonds, 20 residues, 2 models selected  

> select add #1.1/A:345@HB3

98 atoms, 36 bonds, 20 residues, 2 models selected  

> select add #1.1/A:345@O

99 atoms, 36 bonds, 20 residues, 2 models selected  

> select add #1.1/A:348@CB

100 atoms, 36 bonds, 20 residues, 2 models selected  

> select add #1.1/A:349@CA

101 atoms, 36 bonds, 21 residues, 2 models selected  

> select add #1.1/A:348@HB

102 atoms, 36 bonds, 21 residues, 2 models selected  

> select subtract #1.1/A:345@O

101 atoms, 36 bonds, 21 residues, 2 models selected  

> select add #1.1/A:345@O

102 atoms, 36 bonds, 21 residues, 2 models selected  

> select subtract #1.1/A:345@CB

101 atoms, 36 bonds, 21 residues, 2 models selected  

> select add #1.1/A:349@OG1

102 atoms, 36 bonds, 21 residues, 2 models selected  

> select subtract #1.1/A:345@HB3

101 atoms, 36 bonds, 21 residues, 2 models selected  

> select add #1.1/A:345@HB3

102 atoms, 36 bonds, 21 residues, 2 models selected  

> select add #1.1/A:321@SG

103 atoms, 36 bonds, 22 residues, 2 models selected  

> select subtract #1.1/A:345@HB3

102 atoms, 36 bonds, 22 residues, 2 models selected  

> select add #1.1/A:345@CB

103 atoms, 36 bonds, 22 residues, 2 models selected  

> select add #1.1/A:345@HB3

104 atoms, 36 bonds, 22 residues, 2 models selected  

> select add #1.1/A:345@C

105 atoms, 36 bonds, 22 residues, 2 models selected  

> select add #1.1/A:348@C

106 atoms, 36 bonds, 22 residues, 2 models selected  

> select add #1.1/A:348@HG23

107 atoms, 36 bonds, 22 residues, 2 models selected  

> select add #1.1/A:349@N

108 atoms, 36 bonds, 22 residues, 2 models selected  

> select add #1.1/A:352@CG

109 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:352@CB

110 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:349@HA

111 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:349@HG23

112 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:315@NH2

113 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:315@CZ

114 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:349@CG2

115 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:349@CB

116 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:579@HE2

117 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:580@CA

118 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:315@HH11

119 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:315@HH12

120 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:352@OD2

121 atoms, 36 bonds, 23 residues, 2 models selected  

> select subtract #1.1/A:315@NH2

120 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:315@NH2

121 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:315@HH21

122 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:352@OD1

123 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:427@CD1

124 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:427@CE1

125 atoms, 36 bonds, 23 residues, 2 models selected  

> select add #1.1/A:355@CB

126 atoms, 36 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@HB3

127 atoms, 36 bonds, 25 residues, 2 models selected  

> select add #1.1/A:356@CG

128 atoms, 36 bonds, 25 residues, 2 models selected  

> select add #1.1/A:356@OD2

129 atoms, 36 bonds, 25 residues, 2 models selected  

> select add #1.1/A:345@ND2

130 atoms, 36 bonds, 25 residues, 2 models selected  

> select subtract #1.1/A:356@HB3

129 atoms, 36 bonds, 25 residues, 2 models selected  

> select add #1.1/A:430@OE2

130 atoms, 36 bonds, 26 residues, 2 models selected  

> select add #1.1/A:512@NZ

131 atoms, 36 bonds, 27 residues, 2 models selected  

> select add #1.1/A:512@HZ2

132 atoms, 36 bonds, 27 residues, 2 models selected  

> select add #1.1/A:512@HZ3

133 atoms, 36 bonds, 27 residues, 2 models selected  

> select add #1.1/A:504@OE2

134 atoms, 36 bonds, 27 residues, 2 models selected  

> select add #1.1/A:504@CD

135 atoms, 36 bonds, 27 residues, 2 models selected  

> select add #1.1/A:507@NH2

136 atoms, 36 bonds, 28 residues, 2 models selected  

> select add #1.1/A:580@HA2

137 atoms, 36 bonds, 28 residues, 2 models selected  

> select add #1.1/A:500@HB

138 atoms, 36 bonds, 28 residues, 2 models selected  

> select add #1.1/A:504@CG

139 atoms, 36 bonds, 28 residues, 2 models selected  

> select add #1.1/A:500@O

140 atoms, 36 bonds, 28 residues, 2 models selected  

> select add #1.1/A:500@HA

141 atoms, 36 bonds, 28 residues, 2 models selected  

> select add #1.1/A:500@CA

142 atoms, 36 bonds, 28 residues, 2 models selected  

> select add #1.1/A:503@HB3

143 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:504@HG3

144 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:503@CB

145 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:504@N

146 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:356@CB

147 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:356@HB3

148 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:356@N

149 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:352@O

150 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:356@CA

151 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:356@HA

152 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:355@C

153 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:355@O

154 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:355@HB2

155 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:427@O

156 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:427@HD1

157 atoms, 36 bonds, 29 residues, 2 models selected  

> select add #1.1/A:431@CB

158 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:431@HB3

159 atoms, 36 bonds, 30 residues, 2 models selected  

> select subtract #1.1/A:427@O

158 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:427@CB

159 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:427@O

160 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:427@CA

161 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:427@HA

162 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:452@HB2

163 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:452@CB

164 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:452@OG

165 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:452@C

166 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:430@C

167 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:430@HB3

168 atoms, 36 bonds, 30 residues, 2 models selected  

> select subtract #1.1/A:430@C

167 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:430@CB

168 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:430@HB2

169 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:431@CA

170 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:431@N

171 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:430@C

172 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:430@O

173 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:431@HA

174 atoms, 36 bonds, 30 residues, 2 models selected  

> select add #1.1/A:434@CB

175 atoms, 36 bonds, 31 residues, 2 models selected  

> select add #1.1/A:434@HB3

176 atoms, 36 bonds, 31 residues, 2 models selected  

> select add #1.1/A:510@HB

177 atoms, 36 bonds, 32 residues, 2 models selected  

> select add #1.1/A:510@CG1

178 atoms, 36 bonds, 32 residues, 2 models selected  

> select add #1.1/A:510@CB

179 atoms, 36 bonds, 32 residues, 2 models selected  

> select add #1.1/A:507@HH22

180 atoms, 36 bonds, 32 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select subtract #1.1/A:503@CB

179 atoms, 36 bonds, 32 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select add #1.1/A:503@CB

180 atoms, 36 bonds, 32 residues, 2 models selected  

> show sel atoms

> show sel cartoons

> select #1.1/A:315-316

36 atoms, 35 bonds, 2 residues, 1 model selected  

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select clear

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select clear

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select #1.1/A:315

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> select
> #1.1/A:70-75,79-81,83-102,106-118,122-124,126-139,154-166,173-179,188-192,194-206,212-231,236-247,250-252,256-267,274-305,307-310,318-328,335-358,361-373,376-381,384-408,413-436,442-452,455-466,472-479,483-507,513-521,525-547,556-572,584-595

6634 atoms, 6679 bonds, 400 residues, 1 model selected  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\ActivesiteSesh.cxs" format session

opened ChimeraX session  

> select add #1.1/A:348@CG2

2 atoms, 2 residues, 1 model selected  

> select add #1.1/A:345@HA

3 atoms, 3 residues, 2 models selected  

> select add #1.1/A:454@OG

4 atoms, 4 residues, 2 models selected  

> select add #1.1/A:348@HG22

5 atoms, 4 residues, 2 models selected  

> select add #1.1/A:348@CD1

6 atoms, 4 residues, 2 models selected  

> select add #1.1/A:348@CB

7 atoms, 4 residues, 2 models selected  

> select add #1.1/A:345@OD1

8 atoms, 4 residues, 2 models selected  

> select add #1.1/A:458@SD

9 atoms, 5 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> select add #1.1/A:345@O

10 atoms, 5 residues, 2 models selected  

> select add #1.1/A:345@HB3

11 atoms, 5 residues, 2 models selected  

> select #1.1/A:345@CA

1 atom, 1 residue, 1 model selected  

> select add #1.1/A:345@CB

2 atoms, 1 residue, 2 models selected  

> select add #1.1/A:345@CG

3 atoms, 1 residue, 2 models selected  

> select add #1.1/A:345@HB3

4 atoms, 1 residue, 2 models selected  

> select add #1.1/A:345@O

5 atoms, 1 residue, 2 models selected  

> select up

14 atoms, 13 bonds, 1 residue, 2 models selected  

> select add #1.1/A:324@CD1

15 atoms, 13 bonds, 2 residues, 2 models selected  

> select add #1.1/A:324@CG

16 atoms, 13 bonds, 2 residues, 2 models selected  

> select add #1.1/A:324@CD2

17 atoms, 13 bonds, 2 residues, 2 models selected  

> select add #1.1/A:324@CE2

18 atoms, 13 bonds, 2 residues, 2 models selected  

> select add #1.1/A:324@NE1

19 atoms, 13 bonds, 2 residues, 2 models selected  

> select add #1.1/A:579@CE1

20 atoms, 13 bonds, 3 residues, 2 models selected  

> select add #1.1/A:349@OG1

21 atoms, 13 bonds, 4 residues, 2 models selected  

> select add #1.1/A:321@SG

22 atoms, 13 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@NE2

23 atoms, 13 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@HE2

24 atoms, 13 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@CG

25 atoms, 13 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@CD2

26 atoms, 13 bonds, 5 residues, 2 models selected  

> select add #1.1/A:579@ND1

27 atoms, 13 bonds, 5 residues, 2 models selected  

> select add #1.1/A:315@NH1

28 atoms, 13 bonds, 6 residues, 2 models selected  

> select add #1.1/A:324@CZ2

29 atoms, 13 bonds, 6 residues, 2 models selected  

> select add #1.1/A:573@OH

30 atoms, 13 bonds, 7 residues, 2 models selected  

> select add #1.1/A:458@SD

31 atoms, 13 bonds, 8 residues, 2 models selected  

> select add #1.1/A:324@CH2

32 atoms, 13 bonds, 8 residues, 2 models selected  

> select add #1.1/A:324@CZ3

33 atoms, 13 bonds, 8 residues, 2 models selected  

> select add #1.1/A:458@CE

34 atoms, 13 bonds, 8 residues, 2 models selected  

> select add #1.1/A:565@CD1

35 atoms, 13 bonds, 9 residues, 2 models selected  

> select add #1.1/A:324@CE3

36 atoms, 13 bonds, 9 residues, 2 models selected  

> select add #1.1/A:458@HE2

37 atoms, 13 bonds, 9 residues, 2 models selected  

> select add #1.1/A:492@CD1

38 atoms, 13 bonds, 10 residues, 2 models selected  

> select add #1.1/A:492@HD12

39 atoms, 13 bonds, 10 residues, 2 models selected  

> select add #1.1/A:492@HD22

40 atoms, 13 bonds, 10 residues, 2 models selected  

> select add #1.1/A:492@CD2

41 atoms, 13 bonds, 10 residues, 2 models selected  

> select add #1.1/A:453@CG1

42 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@CD1

43 atoms, 13 bonds, 11 residues, 2 models selected  

> select subtract #1.1/A:453@CG1

42 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:492@CG

43 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@HG13

44 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@HD12

45 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@CG1

46 atoms, 13 bonds, 11 residues, 2 models selected  

> select subtract #1.1/A:453@CD1

45 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@HD13

46 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@CD1

47 atoms, 13 bonds, 11 residues, 2 models selected  

> select subtract #1.1/A:453@CD1

46 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@CD1

47 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:453@O

48 atoms, 13 bonds, 11 residues, 2 models selected  

> select add #1.1/A:454@HG

49 atoms, 13 bonds, 12 residues, 2 models selected  

> select add #1.1/A:454@OG

50 atoms, 13 bonds, 12 residues, 2 models selected  

> select add #1.1/A:348@CG2

51 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@CD1

52 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@HG22

53 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@CB

54 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@HG23

55 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:349@CA

56 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:349@N

57 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@HB

58 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:349@HA

59 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:349@HG23

60 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:315@CZ

61 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:315@NH2

62 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:349@CG2

63 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:349@CB

64 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:315@HH12

65 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:579@HD2

66 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:315@HH11

67 atoms, 13 bonds, 13 residues, 2 models selected  

> select add #1.1/A:580@N

68 atoms, 13 bonds, 14 residues, 2 models selected  

> select add #1.1/A:579@HB3

69 atoms, 13 bonds, 14 residues, 2 models selected  

> select subtract #1.1/A:579@HB3

68 atoms, 13 bonds, 14 residues, 2 models selected  

> select add #1.1/A:579@HB3

69 atoms, 13 bonds, 14 residues, 2 models selected  

> select add #1.1/A:573@CE1

70 atoms, 13 bonds, 14 residues, 2 models selected  

> select add #1.1/A:579@CB

71 atoms, 13 bonds, 14 residues, 2 models selected  

> select add #1.1/A:577@OD1

72 atoms, 13 bonds, 15 residues, 2 models selected  

> select add #1.1/A:573@HE1

73 atoms, 13 bonds, 15 residues, 2 models selected  

> select add #1.1/A:577@OD2

74 atoms, 13 bonds, 15 residues, 2 models selected  

> select add #1.1/A:496@OD2

75 atoms, 13 bonds, 16 residues, 2 models selected  

> select add #1.1/A:573@HH

76 atoms, 13 bonds, 16 residues, 2 models selected  

> select add #1.1/A:500@CG2

77 atoms, 13 bonds, 17 residues, 2 models selected  

> select add #1.1/A:577@CG

78 atoms, 13 bonds, 17 residues, 2 models selected  

> select add #1.1/A:500@HG23

79 atoms, 13 bonds, 17 residues, 2 models selected  

> select add #1.1/A:504@HG3

80 atoms, 13 bonds, 18 residues, 2 models selected  

> select add #1.1/A:504@OE1

81 atoms, 13 bonds, 18 residues, 2 models selected  

> select subtract #1.1/A:504@HG3

80 atoms, 13 bonds, 18 residues, 2 models selected  

> select add #1.1/A:504@CG

81 atoms, 13 bonds, 18 residues, 2 models selected  

> select add #1.1/A:500@HB

82 atoms, 13 bonds, 18 residues, 2 models selected  

> select add #1.1/A:500@CB

83 atoms, 13 bonds, 18 residues, 2 models selected  

> select add #1.1/A:507@HH22

84 atoms, 13 bonds, 19 residues, 2 models selected  

> select add #1.1/A:507@NH2

85 atoms, 13 bonds, 19 residues, 2 models selected  

> select add #1.1/A:352@OD2

86 atoms, 13 bonds, 20 residues, 2 models selected  

> select add #1.1/A:352@CB

87 atoms, 13 bonds, 20 residues, 2 models selected  

> select add #1.1/A:315@HH21

88 atoms, 13 bonds, 20 residues, 2 models selected  

> select add #1.1/A:348@C

89 atoms, 13 bonds, 20 residues, 2 models selected  

> select add #1.1/A:352@OD1

90 atoms, 13 bonds, 20 residues, 2 models selected  

> select add #1.1/A:352@CG

91 atoms, 13 bonds, 20 residues, 2 models selected  

> select add #1.1/A:427@OH

92 atoms, 13 bonds, 21 residues, 2 models selected  

> select add #1.1/A:452@O

93 atoms, 13 bonds, 22 residues, 2 models selected  

> select add #1.1/A:427@HE1

94 atoms, 13 bonds, 22 residues, 2 models selected  

> select add #1.1/A:427@CE1

95 atoms, 13 bonds, 22 residues, 2 models selected  

> select add #1.1/A:453@C

96 atoms, 13 bonds, 22 residues, 2 models selected  

> select add #1.1/A:453@HA

97 atoms, 13 bonds, 22 residues, 2 models selected  

> select add #1.1/A:454@CB

98 atoms, 13 bonds, 22 residues, 2 models selected  

> select add #1.1/A:453@CA

99 atoms, 13 bonds, 22 residues, 2 models selected  

> select add #1.1/A:493@NH2

100 atoms, 13 bonds, 23 residues, 2 models selected  

> select add #1.1/A:493@HH21

101 atoms, 13 bonds, 23 residues, 2 models selected  

> select add #1.1/A:493@HH11

102 atoms, 13 bonds, 23 residues, 2 models selected  

> select add #1.1/A:496@OD1

103 atoms, 13 bonds, 23 residues, 2 models selected  

> select add #1.1/A:493@NH1

104 atoms, 13 bonds, 23 residues, 2 models selected  

> select add #1.1/A:496@CG

105 atoms, 13 bonds, 23 residues, 2 models selected  

> select add #1.1/A:512@HZ2

106 atoms, 13 bonds, 24 residues, 2 models selected  

> select add #1.1/A:512@NZ

107 atoms, 13 bonds, 24 residues, 2 models selected  

> select add #1.1/A:504@OE2

108 atoms, 13 bonds, 24 residues, 2 models selected  

> select add #1.1/A:504@CD

109 atoms, 13 bonds, 24 residues, 2 models selected  
Drag select of B0F4G4_Docked.pdb_A SES surface, 88 of 552840 triangles  

> undo

> select subtract #1.1/A:352@OD1

108 atoms, 13 bonds, 24 residues, 2 models selected  

> select add #1.1/A:509@OD2

109 atoms, 13 bonds, 25 residues, 2 models selected  

> select add #1.1/A:512@HZ3

110 atoms, 13 bonds, 25 residues, 2 models selected  

> select add #1.1/A:356@OD2

111 atoms, 13 bonds, 26 residues, 2 models selected  

> select add #1.1/A:452@HB2

112 atoms, 13 bonds, 26 residues, 2 models selected  

> select add #1.1/A:452@CB

113 atoms, 13 bonds, 26 residues, 2 models selected  

> select add #1.1/A:452@C

114 atoms, 13 bonds, 26 residues, 2 models selected  

> select add #1.1/A:430@OE2

115 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:452@OG

116 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:427@CD1

117 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:427@HD1

118 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:352@OD1

119 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:356@CB

120 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:356@CG

121 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:356@HB3

122 atoms, 13 bonds, 27 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select add #1.1/A:580@CA

123 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:580@HA2

124 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:430@HB3

125 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:427@O

126 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:427@CA

127 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:427@HA

128 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:430@CB

129 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:430@HB2

130 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:355@CB

131 atoms, 13 bonds, 28 residues, 2 models selected  

> select add #1.1/A:427@CB

132 atoms, 13 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:355@CB

131 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:355@CB

132 atoms, 13 bonds, 28 residues, 2 models selected  

> select add #1.1/A:356@N

133 atoms, 13 bonds, 28 residues, 2 models selected  

> select add #1.1/A:352@O

134 atoms, 13 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select subtract #1.1/A:500@CB

133 atoms, 13 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select add #1.1/A:500@CB

134 atoms, 13 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:427@O

133 atoms, 13 bonds, 28 residues, 2 models selected  

> select add #1.1/A:427@O

134 atoms, 13 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:427@O

133 atoms, 13 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:355@CB

132 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:355@CB

133 atoms, 13 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:355@CB

132 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:500@CA

133 atoms, 13 bonds, 27 residues, 2 models selected  

> select subtract #1.1/A:500@CA

132 atoms, 13 bonds, 27 residues, 2 models selected  

> select add #1.1/A:510@HB

133 atoms, 13 bonds, 28 residues, 2 models selected  

> select up

459 atoms, 442 bonds, 28 residues, 2 models selected  

> select down

133 atoms, 13 bonds, 28 residues, 2 models selected  

> select up

459 atoms, 442 bonds, 28 residues, 2 models selected  

> select down

133 atoms, 13 bonds, 28 residues, 2 models selected  

> select up

459 atoms, 442 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select ~sel

8166 atoms, 8289 bonds, 503 residues, 3 models selected  

> hide sel surfaces

> select ~sel

459 atoms, 442 bonds, 28 residues, 1 model selected  

> show sel cartoons

> show sel atoms

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/B0F4G4DockedSession.cxs"

> color (#!1.1 & sel) medium blue

> undo

> select #1.1/A:321

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

180 atoms, 183 bonds, 11 residues, 2 models selected  

> select up

8603 atoms, 8710 bonds, 530 residues, 2 models selected  

> select up

8603 atoms, 8710 bonds, 530 residues, 2 models selected  

> select up

8625 atoms, 8731 bonds, 531 residues, 3 models selected  

> show sel cartoons

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/B0F4G4DockedSessionFULL.cxs"

> select clear

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/test.pdb" models #1.2

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4DockedSessionFULL.cxs" format session

opened ChimeraX session  

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/B0F4G4Docked.pdb"

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4Docked.pdb" format pdb

Summary of feedback from opening C:\Users\catha\Downloads\Docked (1)\Limonene
(1)\B0F4G4-pdb70 (1)\Docked (1)\B0F4G4Docked.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 70
THR A 75 1 6  
Start residue of secondary structure not found: HELIX 2 2 ASP A 79 LYS A 81 1
3  
Start residue of secondary structure not found: HELIX 3 3 GLU A 83 LYS A 102 1
20  
Start residue of secondary structure not found: HELIX 4 4 GLN A 106 ARG A 118
1 13  
Start residue of secondary structure not found: HELIX 5 5 SER A 122 HIS A 124
1 3  
25 messages similar to the above omitted  
  
Chain information for B0F4G4Docked.pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4DockedSessionFULL.cxs" format session

opened ChimeraX session  

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/B0F4G4DockedFULL.pdb" displayedOnly true selectedOnly true

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4DockedFULL.pdb" format pdb

Summary of feedback from opening C:\Users\catha\Downloads\Docked (1)\Limonene
(1)\B0F4G4-pdb70 (1)\Docked (1)\B0F4G4DockedFULL.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 70
THR A 75 1 6  
Start residue of secondary structure not found: HELIX 2 2 ASP A 79 LYS A 81 1
3  
Start residue of secondary structure not found: HELIX 3 3 GLU A 83 LYS A 102 1
20  
Start residue of secondary structure not found: HELIX 4 4 GLN A 106 ARG A 118
1 13  
Start residue of secondary structure not found: HELIX 5 5 SER A 122 HIS A 124
1 3  
55 messages similar to the above omitted  
  
Chain information for B0F4G4DockedFULL.pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4DockedSessionFULL.cxs" format session

opened ChimeraX session  

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/Test display.mol2"

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\Test display.mol2" format mol2

Chain information for B0F4G4_Docked.pdb  
---  
Chain | Description  
1.1/A | No description available  
  
Opened Test display.mol2 containing 2 structures (8625 atoms, 8731 bonds)  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4Docked.pdb" format pdb

Summary of feedback from opening C:\Users\catha\Downloads\Docked (1)\Limonene
(1)\B0F4G4-pdb70 (1)\Docked (1)\B0F4G4Docked.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 70
THR A 75 1 6  
Start residue of secondary structure not found: HELIX 2 2 ASP A 79 LYS A 81 1
3  
Start residue of secondary structure not found: HELIX 3 3 GLU A 83 LYS A 102 1
20  
Start residue of secondary structure not found: HELIX 4 4 GLN A 106 ARG A 118
1 13  
Start residue of secondary structure not found: HELIX 5 5 SER A 122 HIS A 124
1 3  
25 messages similar to the above omitted  
  
Chain information for B0F4G4Docked.pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4DockedSessionFULL.cxs" format session

opened ChimeraX session  

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/TestSurface.pdb" relModel #1.1.1

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\TestSurface.pdb" format pdb

Summary of feedback from opening C:\Users\catha\Downloads\Docked (1)\Limonene
(1)\B0F4G4-pdb70 (1)\Docked (1)\TestSurface.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 70
THR A 75 1 6  
Start residue of secondary structure not found: HELIX 2 2 ASP A 79 LYS A 81 1
3  
Start residue of secondary structure not found: HELIX 3 3 GLU A 83 LYS A 102 1
20  
Start residue of secondary structure not found: HELIX 4 4 GLN A 106 ARG A 118
1 13  
Start residue of secondary structure not found: HELIX 5 5 SER A 122 HIS A 124
1 3  
25 messages similar to the above omitted  
  
Chain information for TestSurface.pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4DockedSessionFULL.cxs" format session

opened ChimeraX session  

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/B0F4G4-pdb70
> (1)/Docked (1)/Test.mol2"

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\Test.mol2" format mol2

Chain information for B0F4G4_Docked.pdb  
---  
Chain | Description  
1.1/A | No description available  
  
Opened Test.mol2 containing 2 structures (8625 atoms, 8731 bonds)  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4DockedSessionFULL.cxs" format session

opened ChimeraX session  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\Test.mol2" format mol2

Chain information for B0F4G4_Docked.pdb  
---  
Chain | Description  
1.1/A | No description available  
  
Opened Test.mol2 containing 2 structures (8625 atoms, 8731 bonds)  

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q9SW76-pdb70
> (1)/Q9SW76_NMA (1).pdb"

Chain information for Q9SW76_NMA (1).pdb #1  
---  
Chain | Description  
A | No description available  
  

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q9SW76-pdb70
> (1)/Docked (1)/Q9SW76_Dock1 (1).pdb"

Summary of feedback from opening C:/Users/catha/Downloads/Docked (1)/Limonene
(1)/Q9SW76-pdb70 (1)/Docked (1)/Q9SW76_Dock1 (1).pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 70
SER A 75 1 6  
Start residue of secondary structure not found: HELIX 2 2 ASP A 79 GLU A 81 1
3  
Start residue of secondary structure not found: HELIX 3 3 ASP A 83 LYS A 102 1
20  
Start residue of secondary structure not found: HELIX 4 4 HIS A 106 ARG A 118
1 13  
Start residue of secondary structure not found: HELIX 5 5 SER A 122 HIS A 124
1 3  
24 messages similar to the above omitted  
  
Chain information for Q9SW76_Dock1 (1).pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q9SW76-pdb70
> (1)/Docked (1)/Q9SW76DockSesh.cxs"

registering illegal selector name "Q9SW76Active Site"  

opened ChimeraX session  

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q9SW76-pdb70
> (1)/Docked (1)/DockSesh.cxs"

opened ChimeraX session  

> select add #1.1/A:458@CE

1 atom, 1 residue, 1 model selected  

> select up

17 atoms, 16 bonds, 1 residue, 2 models selected  

> select add #1.1/A:324@CZ3

18 atoms, 16 bonds, 2 residues, 2 models selected  

> select add #1.1/A:565@CD1

19 atoms, 16 bonds, 3 residues, 2 models selected  

> select add #1.1/A:492@CD1

20 atoms, 16 bonds, 4 residues, 2 models selected  

> select add #1.1/A:492@HD11

21 atoms, 16 bonds, 4 residues, 2 models selected  

> select add #1.1/A:492@HD23

22 atoms, 16 bonds, 4 residues, 2 models selected  

> select add #1.1/A:492@CD2

23 atoms, 16 bonds, 4 residues, 2 models selected  

> select add #1.1/A:453@CD1

24 atoms, 16 bonds, 5 residues, 2 models selected  

> select add #1.1/A:453@O

25 atoms, 16 bonds, 5 residues, 2 models selected  

> select add #1.1/A:453@HD13

26 atoms, 16 bonds, 5 residues, 2 models selected  

> select add #1.1/A:453@CG1

27 atoms, 16 bonds, 5 residues, 2 models selected  

> select add #1.1/A:453@HD11

28 atoms, 16 bonds, 5 residues, 2 models selected  

> select add #1.1/A:454@OG

29 atoms, 16 bonds, 6 residues, 2 models selected  

> select add #1.1/A:454@HG

30 atoms, 16 bonds, 6 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> select add #1.1/A:345@OD1

31 atoms, 16 bonds, 7 residues, 2 models selected  

> select add #1.1/A:348@CD1

32 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:348@HD13

33 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:348@HG22

34 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:348@CG2

35 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:348@HG23

36 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:454@CB

37 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:453@C

38 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@HA

39 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:348@HB

40 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:348@CB

41 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@CA

42 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@CB

43 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@CG

44 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@HB2

45 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@O

46 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@C

47 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:345@ND2

48 atoms, 16 bonds, 8 residues, 2 models selected  

> select add #1.1/A:427@OH

49 atoms, 16 bonds, 9 residues, 2 models selected  

> select add #1.1/A:427@CE1

50 atoms, 16 bonds, 9 residues, 2 models selected  

> select add #1.1/A:427@HE1

51 atoms, 16 bonds, 9 residues, 2 models selected  

> select add #1.1/A:452@O

52 atoms, 16 bonds, 10 residues, 2 models selected  

> select add #1.1/A:453@HA

53 atoms, 16 bonds, 10 residues, 2 models selected  

> select add #1.1/A:453@CA

54 atoms, 16 bonds, 10 residues, 2 models selected  

> select add #1.1/A:493@NH2

55 atoms, 16 bonds, 11 residues, 2 models selected  

> select add #1.1/A:493@HH22

56 atoms, 16 bonds, 11 residues, 2 models selected  

> select add #1.1/A:493@HH11

57 atoms, 16 bonds, 11 residues, 2 models selected  

> select add #1.1/A:493@NH1

58 atoms, 16 bonds, 11 residues, 2 models selected  

> select add #1.1/A:496@OD1

59 atoms, 16 bonds, 12 residues, 2 models selected  

> select add #1.1/A:496@OD2

60 atoms, 16 bonds, 12 residues, 2 models selected  

> select add #1.1/A:496@CG

61 atoms, 16 bonds, 12 residues, 2 models selected  

> select add #1.1/A:573@OH

62 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:573@HH

63 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@CZ2

64 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@CH2

65 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@CG

66 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@CE3

67 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@CD2

68 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@CE2

69 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@CD1

70 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:324@NE1

71 atoms, 16 bonds, 13 residues, 2 models selected  

> select add #1.1/A:579@CE1

72 atoms, 16 bonds, 14 residues, 2 models selected  

> select add #1.1/A:579@ND1

73 atoms, 16 bonds, 14 residues, 2 models selected  

> select add #1.1/A:579@CG

74 atoms, 16 bonds, 14 residues, 2 models selected  

> select add #1.1/A:579@CD2

75 atoms, 16 bonds, 14 residues, 2 models selected  

> select add #1.1/A:321@CA

76 atoms, 16 bonds, 15 residues, 2 models selected  

> select add #1.1/A:321@SG

77 atoms, 16 bonds, 15 residues, 2 models selected  

> select add #1.1/A:349@OG1

78 atoms, 16 bonds, 16 residues, 2 models selected  

> select add #1.1/A:349@N

79 atoms, 16 bonds, 16 residues, 2 models selected  

> select add #1.1/A:349@CA

80 atoms, 16 bonds, 16 residues, 2 models selected  

> select add #1.1/A:352@CB

81 atoms, 16 bonds, 17 residues, 2 models selected  

> select add #1.1/A:348@C

82 atoms, 16 bonds, 17 residues, 2 models selected  

> select add #1.1/A:352@CG

83 atoms, 16 bonds, 17 residues, 2 models selected  

> select add #1.1/A:349@HA

84 atoms, 16 bonds, 17 residues, 2 models selected  

> select add #1.1/A:352@OD1

85 atoms, 16 bonds, 17 residues, 2 models selected  

> select add #1.1/A:352@OD2

86 atoms, 16 bonds, 17 residues, 2 models selected  

> select add #1.1/A:315@NH2

87 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:349@CG2

88 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:579@NE2

89 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:349@CB

90 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:315@NH1

91 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:315@CZ

92 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:579@HD2

93 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:349@HG22

94 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:315@HH11

95 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:315@HH12

96 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:452@OG

97 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:452@CB

98 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:452@C

99 atoms, 16 bonds, 18 residues, 2 models selected  

> select add #1.1/A:512@HZ3

100 atoms, 16 bonds, 19 residues, 2 models selected  

> select add #1.1/A:504@OE2

101 atoms, 16 bonds, 20 residues, 2 models selected  

> select add #1.1/A:512@NZ

102 atoms, 16 bonds, 20 residues, 2 models selected  

> select add #1.1/A:430@OE2

103 atoms, 16 bonds, 21 residues, 2 models selected  

> select add #1.1/A:504@OE1

104 atoms, 16 bonds, 21 residues, 2 models selected  

> select add #1.1/A:504@CD

105 atoms, 16 bonds, 21 residues, 2 models selected  

> select add #1.1/A:500@HG23

106 atoms, 16 bonds, 22 residues, 2 models selected  

> select add #1.1/A:500@CG2

107 atoms, 16 bonds, 22 residues, 2 models selected  

> select add #1.1/A:573@HE1

108 atoms, 16 bonds, 22 residues, 2 models selected  

> select add #1.1/A:573@CE1

109 atoms, 16 bonds, 22 residues, 2 models selected  

> select add #1.1/A:579@HB3

110 atoms, 16 bonds, 22 residues, 2 models selected  

> select add #1.1/A:579@CB

111 atoms, 16 bonds, 22 residues, 2 models selected  

> select add #1.1/A:355@CB

112 atoms, 16 bonds, 23 residues, 2 models selected  

> select add #1.1/A:356@OD2

113 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:355@HB3

114 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@CB

115 atoms, 16 bonds, 24 residues, 2 models selected  

> select subtract #1.1/A:356@OD2

114 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@HB3

115 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@OD2

116 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@CG

117 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@N

118 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@CA

119 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:355@C

120 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@HA

121 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@CD1

122 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@HD1

123 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@CA

124 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@CB

125 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@HA

126 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@HB3

127 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@CG

128 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@O

129 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:427@C

130 atoms, 16 bonds, 24 residues, 2 models selected  

> select add #1.1/A:509@OD2

131 atoms, 16 bonds, 25 residues, 2 models selected  

> select add #1.1/A:512@HZ1

132 atoms, 16 bonds, 25 residues, 2 models selected  

> select add #1.1/A:507@NH2

133 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:504@CG

134 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:507@HH22

135 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:507@HH21

136 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:507@HH12

137 atoms, 16 bonds, 26 residues, 2 models selected  

> select subtract #1.1/A:507@HH12

136 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:509@OD1

137 atoms, 16 bonds, 26 residues, 2 models selected  

> select subtract #1.1/A:509@OD2

136 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:509@OD2

137 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:509@CG

138 atoms, 16 bonds, 26 residues, 2 models selected  

> select add #1.1/A:510@CG1

139 atoms, 16 bonds, 27 residues, 2 models selected  

> select add #1.1/A:430@CB

140 atoms, 16 bonds, 27 residues, 2 models selected  

> select add #1.1/A:430@HB2

141 atoms, 16 bonds, 27 residues, 2 models selected  

> select add #1.1/A:430@HB3

142 atoms, 16 bonds, 27 residues, 2 models selected  

> select add #1.1/A:431@N

143 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:431@CB

144 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:431@HB3

145 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:431@CA

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:430@C

147 atoms, 16 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select subtract #1.1/A:431@CA

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:431@HA

147 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:431@CA

148 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:356@HB2

149 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:510@HB

150 atoms, 16 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:510@HB

149 atoms, 16 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:430@C

148 atoms, 16 bonds, 28 residues, 2 models selected  

> select down

148 atoms, 16 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select subtract #1.1/A:430@CB

147 atoms, 16 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select subtract #1.1/A:430@HB3

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select down

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select down

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select down

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:430@HB2

145 atoms, 16 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select subtract #1.1/A:430@OE2

144 atoms, 16 bonds, 27 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select add #1.1/A:430@OE2

145 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:430@CB

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:430@HB3

147 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:430@HB2

148 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:430@C

149 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:430@O

150 atoms, 16 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:431@CA

149 atoms, 16 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:431@HA

148 atoms, 16 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:431@CB

147 atoms, 16 bonds, 28 residues, 2 models selected  

> select subtract #1.1/A:431@N

146 atoms, 16 bonds, 28 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select subtract #1.1/A:431@HB3

145 atoms, 16 bonds, 27 residues, 2 models selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> select add #1.1/A:577@OD1

146 atoms, 16 bonds, 28 residues, 2 models selected  

> select add #1.1/A:580@N

147 atoms, 16 bonds, 29 residues, 2 models selected  

> select add #1.1/A:577@CG

148 atoms, 16 bonds, 29 residues, 2 models selected  

> select subtract #1.1/A:577@CG

147 atoms, 16 bonds, 29 residues, 2 models selected  

> select add #1.1/A:580@CA

148 atoms, 16 bonds, 29 residues, 2 models selected  

> select up

479 atoms, 463 bonds, 29 residues, 2 models selected  

> select down

148 atoms, 16 bonds, 29 residues, 2 models selected  

> select ~sel

8497 atoms, 8642 bonds, 530 residues, 3 models selected  

> hide sel cartoons

> hide sel surfaces

> select clear

> select #1.1/A:574

17 atoms, 17 bonds, 1 residue, 1 model selected  

> select #1.1/A:574

17 atoms, 17 bonds, 1 residue, 1 model selected  

> select #1.1/A:572-574

55 atoms, 56 bonds, 3 residues, 1 model selected  

> select #1.1/A:572-574

55 atoms, 56 bonds, 3 residues, 1 model selected  

> select clear

> select #1.1/A:575

14 atoms, 13 bonds, 1 residue, 1 model selected  

> select #1.1/A:574-575

31 atoms, 31 bonds, 2 residues, 1 model selected  

> select clear

> select #1.1/A:574

17 atoms, 17 bonds, 1 residue, 1 model selected  

> select #1.1/A:574

17 atoms, 17 bonds, 1 residue, 1 model selected  

> show sel surfaces

> hide sel surfaces

> show sel surfaces

> hide sel surfaces

> show sel surfaces

> show sel atoms

> hide sel atoms

> select #1.1/A:579

17 atoms, 17 bonds, 1 residue, 1 model selected  

> select #1.1/A:579

17 atoms, 17 bonds, 1 residue, 1 model selected  

> show sel surfaces

> select #1.1/A:579-580

24 atoms, 24 bonds, 2 residues, 1 model selected  

> show sel surfaces

Drag select of Q9SW76_Dock1.pdb_A SES surface, 16145 of 542146 triangles, 22
atoms, 21 bonds  
Drag select of Q9SW76_Dock1.pdb_A SES surface, 5286 of 542146 triangles, 5
atoms, 4 bonds  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Destroying pre-existing alignment with identifier 1.1/A  
Alignment identifier is 1.1/A  

> undo

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\Q9SW76-pdb70
> (1)\Docked (1)\Q9SW76_Dock1 (1).pdb" format pdb

Summary of feedback from opening C:\Users\catha\Downloads\Docked (1)\Limonene
(1)\Q9SW76-pdb70 (1)\Docked (1)\Q9SW76_Dock1 (1).pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 70
SER A 75 1 6  
Start residue of secondary structure not found: HELIX 2 2 ASP A 79 GLU A 81 1
3  
Start residue of secondary structure not found: HELIX 3 3 ASP A 83 LYS A 102 1
20  
Start residue of secondary structure not found: HELIX 4 4 HIS A 106 ARG A 118
1 13  
Start residue of secondary structure not found: HELIX 5 5 SER A 122 HIS A 124
1 3  
24 messages similar to the above omitted  
  
Chain information for Q9SW76_Dock1 (1).pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\Q9SW76-pdb70
> (1)\Docked (1)\DockSesh.cxs" format session

opened ChimeraX session  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\B0F4G4_Session.cxs" format session

opened ChimeraX session  

> close session

> open "C:\Users\catha\Downloads\Docked (1)\Limonene (1)\B0F4G4-pdb70
> (1)\Docked (1)\ActivesiteSesh.cxs" format session

opened ChimeraX session  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> select add #1.1/A:500@CB

2 atoms, 2 residues, 1 model selected  

> select add #1.1/A:496@OD2

3 atoms, 3 residues, 2 models selected  

> select add #1.1/A:500@HG23

4 atoms, 3 residues, 2 models selected  

> select add #1.1/A:573@CE1

5 atoms, 4 residues, 2 models selected  

> select add #1.1/A:573@OH

6 atoms, 4 residues, 2 models selected  

> select add #1.1/A:573@HH

7 atoms, 4 residues, 2 models selected  

> select add #1.1/A:492@HD22

8 atoms, 5 residues, 2 models selected  

> select add #1.1/A:492@CD1

9 atoms, 5 residues, 2 models selected  

> select add #1.1/A:453@CG1

10 atoms, 6 residues, 2 models selected  

> select add #1.1/A:492@HD12

11 atoms, 6 residues, 2 models selected  

> select add #1.1/A:453@HG13

12 atoms, 6 residues, 2 models selected  

> select add #1.1/A:492@CD2

13 atoms, 6 residues, 2 models selected  

> select add #1.1/A:492@CG

14 atoms, 6 residues, 2 models selected  

> select add #1.1/A:458@SD

15 atoms, 7 residues, 2 models selected  

> select add #1.1/A:458@CE

16 atoms, 7 residues, 2 models selected  

> select add #1.1/A:324@CZ3

17 atoms, 7 residues, 2 models selected  

> select add #1.1/A:565@CD1

18 atoms, 8 residues, 2 models selected  

> select add #1.1/A:458@HE2

19 atoms, 8 residues, 2 models selected  

> select add #1.1/A:324@CG

20 atoms, 8 residues, 2 models selected  

> select up

145 atoms, 140 bonds, 8 residues, 2 models selected  

> select add #1.1/A:493@HH21

146 atoms, 140 bonds, 9 residues, 2 models selected  

> select add #1.1/A:493@NH2

147 atoms, 140 bonds, 9 residues, 2 models selected  

> select add #1.1/A:493@HH11

148 atoms, 140 bonds, 9 residues, 2 models selected  

> select add #1.1/A:512@NZ

149 atoms, 140 bonds, 10 residues, 2 models selected  

> select add #1.1/A:493@NH1

150 atoms, 140 bonds, 10 residues, 2 models selected  

> select add #1.1/A:512@HZ2

151 atoms, 140 bonds, 10 residues, 2 models selected  

> select add #1.1/A:504@OE2

152 atoms, 140 bonds, 11 residues, 2 models selected  

> select add #1.1/A:504@OE1

153 atoms, 140 bonds, 11 residues, 2 models selected  

> select add #1.1/A:345@HA

154 atoms, 140 bonds, 12 residues, 2 models selected  

> select add #1.1/A:345@CG

155 atoms, 140 bonds, 12 residues, 2 models selected  

> select add #1.1/A:345@ND2

156 atoms, 140 bonds, 12 residues, 2 models selected  

> select add #1.1/A:345@OD1

157 atoms, 140 bonds, 12 residues, 2 models selected  

> select add #1.1/A:345@CB

158 atoms, 140 bonds, 12 residues, 2 models selected  

> select add #1.1/A:345@CA

159 atoms, 140 bonds, 12 residues, 2 models selected  

> select add #1.1/A:345@HB3

160 atoms, 140 bonds, 12 residues, 2 models selected  

> select add #1.1/A:348@CD1

161 atoms, 140 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@CB

162 atoms, 140 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@CG2

163 atoms, 140 bonds, 13 residues, 2 models selected  

> select add #1.1/A:345@O

164 atoms, 140 bonds, 13 residues, 2 models selected  

> select add #1.1/A:345@C

165 atoms, 140 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@HB

166 atoms, 140 bonds, 13 residues, 2 models selected  

> select add #1.1/A:348@HG22

167 atoms, 140 bonds, 13 residues, 2 models selected  

> select add #1.1/A:454@OG

168 atoms, 140 bonds, 14 residues, 2 models selected  

> select add #1.1/A:454@HG

169 atoms, 140 bonds, 14 residues, 2 models selected  

> select add #1.1/A:454@CB

170 atoms, 140 bonds, 14 residues, 2 models selected  

> select add #1.1/A:348@HG23

171 atoms, 140 bonds, 14 residues, 2 models selected  

> select add #1.1/A:349@N

172 atoms, 140 bonds, 15 residues, 2 models selected  

> select add #1.1/A:579@CE1

173 atoms, 140 bonds, 16 residues, 2 models selected  

> select add #1.1/A:321@SG

174 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:349@OG1

175 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:579@NE2

176 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:579@CD2

177 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:579@ND1

178 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:579@CG

179 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:579@HD2

180 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:579@HB3

181 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:579@CB

182 atoms, 140 bonds, 17 residues, 2 models selected  

> select add #1.1/A:580@N

183 atoms, 140 bonds, 18 residues, 2 models selected  

> select add #1.1/A:577@OD1

184 atoms, 140 bonds, 19 residues, 2 models selected  

> select add #1.1/A:577@OD2

185 atoms, 140 bonds, 19 residues, 2 models selected  

> select add #1.1/A:577@CG

186 atoms, 140 bonds, 19 residues, 2 models selected  

> select add #1.1/A:504@CD

187 atoms, 140 bonds, 19 residues, 2 models selected  

> select up

312 atoms, 301 bonds, 19 residues, 2 models selected  

> select add #1.1/A:430@OE2

313 atoms, 301 bonds, 20 residues, 2 models selected  

> select add #1.1/A:427@OH

314 atoms, 301 bonds, 21 residues, 2 models selected  

> select add #1.1/A:452@O

315 atoms, 301 bonds, 22 residues, 2 models selected  

> select add #1.1/A:427@HE1

316 atoms, 301 bonds, 22 residues, 2 models selected  

> select add #1.1/A:352@OD2

317 atoms, 301 bonds, 23 residues, 2 models selected  

> select add #1.1/A:352@CB

318 atoms, 301 bonds, 23 residues, 2 models selected  

> select add #1.1/A:315@NH2

319 atoms, 301 bonds, 24 residues, 2 models selected  

> select add #1.1/A:315@NH1

320 atoms, 301 bonds, 24 residues, 2 models selected  

> select add #1.1/A:315@HH11

321 atoms, 301 bonds, 24 residues, 2 models selected  

> select add #1.1/A:315@HH12

322 atoms, 301 bonds, 24 residues, 2 models selected  

> select up

395 atoms, 381 bonds, 24 residues, 2 models selected  

> select add #1.1/A:356@OD2

396 atoms, 381 bonds, 25 residues, 2 models selected  

> select add #1.1/A:507@NH2

397 atoms, 381 bonds, 26 residues, 2 models selected  

> select add #1.1/A:356@CB

398 atoms, 381 bonds, 26 residues, 2 models selected  

> select add #1.1/A:356@CG

399 atoms, 381 bonds, 26 residues, 2 models selected  

> select add #1.1/A:356@HB3

400 atoms, 381 bonds, 26 residues, 2 models selected  

> select add #1.1/A:355@CB

401 atoms, 381 bonds, 27 residues, 2 models selected  

> select up

452 atoms, 437 bonds, 27 residues, 2 models selected  

> select add #1.1/A:509@OD2

453 atoms, 437 bonds, 28 residues, 2 models selected  

> select add #1.1/A:509@OD1

454 atoms, 437 bonds, 28 residues, 2 models selected  

> select add #1.1/A:510@CG1

455 atoms, 437 bonds, 29 residues, 2 models selected  

> show sel atoms

> hide sel cartoons

> select ~sel

8170 atoms, 8294 bonds, 504 residues, 3 models selected  

> hide sel surfaces

> select #1.1/A:512@NZ

1 atom, 1 residue, 1 model selected  

> select up

22 atoms, 21 bonds, 1 residue, 2 models selected  

> select up

71 atoms, 71 bonds, 5 residues, 2 models selected  

> select up

8603 atoms, 8710 bonds, 530 residues, 2 models selected  

> select up

8603 atoms, 8710 bonds, 530 residues, 2 models selected  

> select up

8625 atoms, 8731 bonds, 531 residues, 3 models selected  

> show sel cartoons

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q9SW76-pdb70
> (1)/Docked (1)/Q9SW76DockingSession.cxs"

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q20HU7-pdb70
> (1)/Docked (1)/Q20HU7_Docked (1).pdb"

Summary of feedback from opening C:/Users/catha/Downloads/Docked (1)/Limonene
(1)/Q20HU7-pdb70 (1)/Docked (1)/Q20HU7_Docked (1).pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP A 3
SER A 8 1 6  
Start residue of secondary structure not found: HELIX 2 2 PRO A 12 GLY A 14 1
3  
Start residue of secondary structure not found: HELIX 3 3 PRO A 16 SER A 37 1
22  
Start residue of secondary structure not found: HELIX 4 4 ASP A 49 ARG A 62 1
14  
Start residue of secondary structure not found: HELIX 5 5 ASP A 66 HIS A 68 1
3  
82 messages similar to the above omitted  
  
Chain information for Q20HU7_Docked (1).pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q20HU7-pdb70
> (1)/Docked (1)/DockSesh.cxs"

registering illegal selector name "Q20HU7Active Site"  

opened ChimeraX session  

> hide sel surfaces

> show sel surfaces

> show sel atoms

> select ~sel

8867 atoms, 9021 bonds, 560 residues, 3 models selected  

> hide sel surfaces

> select #1.1/A:273@HH12

1 atom, 1 residue, 1 model selected  

> select up

24 atoms, 23 bonds, 1 residue, 2 models selected  

> select up

126 atoms, 127 bonds, 7 residues, 2 models selected  

> select up

8993 atoms, 9101 bonds, 559 residues, 2 models selected  

> select up

8993 atoms, 9101 bonds, 559 residues, 2 models selected  

> select up

9015 atoms, 9122 bonds, 560 residues, 3 models selected  

> show sel cartoons

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q20HU7-pdb70
> (1)/Docked (1)/Q20HU7DockingSession.cxs"

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q940E7-pdb70
> (1)/Docked (1)/DockSesh.cxs"

opened ChimeraX session  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> select #1.1/A:509@HB2

1 atom, 1 residue, 1 model selected  

> select clear

> select add #1.1/A:359@CG1

1 atom, 1 residue, 1 model selected  

> select add #1.1/A:359@CD1

2 atoms, 1 residue, 2 models selected  

> select add #1.1/A:359@HG12

3 atoms, 1 residue, 2 models selected  

> select add #1.1/A:472@HG21

4 atoms, 2 residues, 2 models selected  

> select add #1.1/A:472@CG1

5 atoms, 2 residues, 2 models selected  

> select add #1.1/A:472@CG2

6 atoms, 2 residues, 2 models selected  

> select add #1.1/A:472@HG11

7 atoms, 2 residues, 2 models selected  

> select add #1.1/A:342@SD

8 atoms, 3 residues, 2 models selected  

> select add #1.1/A:338@CE3

9 atoms, 4 residues, 2 models selected  

> select add #1.1/A:338@CZ3

10 atoms, 4 residues, 2 models selected  

> select add #1.1/A:338@CD2

11 atoms, 4 residues, 2 models selected  

> select add #1.1/A:338@CG

12 atoms, 4 residues, 2 models selected  

> select add #1.1/A:359@HD11

13 atoms, 4 residues, 2 models selected  

> select add #1.1/A:579@CD1

14 atoms, 5 residues, 2 models selected  

> select add #1.1/A:579@HD12

15 atoms, 5 residues, 2 models selected  

> select add #1.1/A:342@CE

16 atoms, 5 residues, 2 models selected  

> select add #1.1/A:506@CD2

17 atoms, 6 residues, 2 models selected  

> select add #1.1/A:506@CD1

18 atoms, 6 residues, 2 models selected  

> select add #1.1/A:506@HD13

19 atoms, 6 residues, 2 models selected  

> select add #1.1/A:506@HD22

20 atoms, 6 residues, 2 models selected  

> select add #1.1/A:467@O

21 atoms, 7 residues, 2 models selected  

> select add #1.1/A:468@HB2

22 atoms, 8 residues, 2 models selected  

> select add #1.1/A:468@C

23 atoms, 8 residues, 2 models selected  

> select add #1.1/A:362@HG21

24 atoms, 9 residues, 2 models selected  

> select add #1.1/A:362@HD12

25 atoms, 9 residues, 2 models selected  

> select add #1.1/A:468@CB

26 atoms, 9 residues, 2 models selected  

> select add #1.1/A:362@CD1

27 atoms, 9 residues, 2 models selected  

> select add #1.1/A:359@CA

28 atoms, 9 residues, 2 models selected  

> select add #1.1/A:359@HG21

29 atoms, 9 residues, 2 models selected  

> select add #1.1/A:359@HA

30 atoms, 9 residues, 2 models selected  

> select add #1.1/A:359@CG2

31 atoms, 9 residues, 2 models selected  

> select add #1.1/A:338@NE1

32 atoms, 9 residues, 2 models selected  

> select add #1.1/A:338@CZ2

33 atoms, 9 residues, 2 models selected  

> select add #1.1/A:338@CE2

34 atoms, 9 residues, 2 models selected  

> select add #1.1/A:338@CD1

35 atoms, 9 residues, 2 models selected  

> select add #1.1/A:338@CH2

36 atoms, 9 residues, 2 models selected  

> select add #1.1/A:467@CG2

37 atoms, 9 residues, 2 models selected  

> select add #1.1/A:467@HG22

38 atoms, 9 residues, 2 models selected  

> select add #1.1/A:467@HA

39 atoms, 9 residues, 2 models selected  

> select add #1.1/A:467@CA

40 atoms, 9 residues, 2 models selected  

> select subtract #1.1/A:467@CA

39 atoms, 9 residues, 2 models selected  

> select add #1.1/A:467@C

40 atoms, 9 residues, 2 models selected  

> select add #1.1/A:467@CA

41 atoms, 9 residues, 2 models selected  

> select add #1.1/A:467@HG21

42 atoms, 9 residues, 2 models selected  

> select add #1.1/A:468@OG

43 atoms, 9 residues, 2 models selected  

> select add #1.1/A:466@O

44 atoms, 10 residues, 2 models selected  

> select add #1.1/A:441@OH

45 atoms, 11 residues, 2 models selected  

> select add #1.1/A:362@CG2

46 atoms, 11 residues, 2 models selected  

> select add #1.1/A:362@HG22

47 atoms, 11 residues, 2 models selected  

> select add #1.1/A:362@CB

48 atoms, 11 residues, 2 models selected  

> select add #1.1/A:359@O

49 atoms, 11 residues, 2 models selected  

> select add #1.1/A:363@OG1

50 atoms, 12 residues, 2 models selected  

> select add #1.1/A:363@CA

51 atoms, 12 residues, 2 models selected  

> select add #1.1/A:363@N

52 atoms, 12 residues, 2 models selected  

> select add #1.1/A:363@HA

53 atoms, 12 residues, 2 models selected  

> select add #1.1/A:593@NE2

54 atoms, 13 residues, 2 models selected  

> select add #1.1/A:593@CD2

55 atoms, 13 residues, 2 models selected  

> select add #1.1/A:593@CE1

56 atoms, 13 residues, 2 models selected  

> select add #1.1/A:593@CG

57 atoms, 13 residues, 2 models selected  

> select add #1.1/A:587@OH

58 atoms, 14 residues, 2 models selected  

> select subtract #1.1/A:593@CE1

57 atoms, 14 residues, 2 models selected  

> select add #1.1/A:593@CB

58 atoms, 14 residues, 2 models selected  

> select add #1.1/A:593@ND1

59 atoms, 14 residues, 2 models selected  

> select add #1.1/A:593@CE1

60 atoms, 14 residues, 2 models selected  

> select add #1.1/A:510@CG

61 atoms, 15 residues, 2 models selected  

> select subtract #1.1/A:467@CG2

60 atoms, 15 residues, 2 models selected  

> select add #1.1/A:510@CB

61 atoms, 15 residues, 2 models selected  

> select add #1.1/A:467@CG2

62 atoms, 15 residues, 2 models selected  

> select add #1.1/A:587@CE2

63 atoms, 15 residues, 2 models selected  

> select add #1.1/A:510@OD1

64 atoms, 15 residues, 2 models selected  

> select add #1.1/A:587@HH

65 atoms, 15 residues, 2 models selected  

> select add #1.1/A:507@NH2

66 atoms, 16 residues, 2 models selected  

> select add #1.1/A:510@OD2

67 atoms, 16 residues, 2 models selected  

> select add #1.1/A:507@HH22

68 atoms, 16 residues, 2 models selected  

> select add #1.1/A:507@NH1

69 atoms, 16 residues, 2 models selected  

> select add #1.1/A:507@HH12

70 atoms, 16 residues, 2 models selected  

> select add #1.1/A:466@OG

71 atoms, 16 residues, 2 models selected  

> select add #1.1/A:466@C

72 atoms, 16 residues, 2 models selected  

> select add #1.1/A:441@HE1

73 atoms, 16 residues, 2 models selected  

> select add #1.1/A:366@OD1

74 atoms, 17 residues, 2 models selected  

> select add #1.1/A:366@CB

75 atoms, 17 residues, 2 models selected  

> select add #1.1/A:366@CG

76 atoms, 17 residues, 2 models selected  

> select add #1.1/A:362@C

77 atoms, 17 residues, 2 models selected  

> select add #1.1/A:441@CE1

78 atoms, 17 residues, 2 models selected  

> select add #1.1/A:441@CD1

79 atoms, 17 residues, 2 models selected  

> select add #1.1/A:444@CD

80 atoms, 18 residues, 2 models selected  

> select add #1.1/A:466@CB

81 atoms, 18 residues, 2 models selected  

> select add #1.1/A:444@OE2

82 atoms, 18 residues, 2 models selected  

> select up

307 atoms, 298 bonds, 18 residues, 2 models selected  

> select down

82 atoms, 18 residues, 2 models selected  

> select add #1.1/A:466@HB3

83 atoms, 18 residues, 2 models selected  

> select add #1.1/A:366@OD2

84 atoms, 18 residues, 2 models selected  

> select add #1.1/A:329@NH2

85 atoms, 19 residues, 2 models selected  

> select add #1.1/A:363@HG21

86 atoms, 19 residues, 2 models selected  

> select add #1.1/A:363@CG2

87 atoms, 19 residues, 2 models selected  

> select add #1.1/A:363@CB

88 atoms, 19 residues, 2 models selected  

> select add #1.1/A:329@HH22

89 atoms, 19 residues, 2 models selected  

> select add #1.1/A:329@NH1

90 atoms, 19 residues, 2 models selected  

> select add #1.1/A:329@CZ

91 atoms, 19 residues, 2 models selected  

> select add #1.1/A:329@HH12

92 atoms, 19 residues, 2 models selected  

> select add #1.1/A:593@HD2

93 atoms, 19 residues, 2 models selected  

> select subtract #1.1/A:363@OG1

92 atoms, 19 residues, 2 models selected  

> select add #1.1/A:363@OG1

93 atoms, 19 residues, 2 models selected  

> select add #1.1/A:593@HE2

94 atoms, 19 residues, 2 models selected  

> select add #1.1/A:593@HB2

95 atoms, 19 residues, 2 models selected  

> select add #1.1/A:591@OD1

96 atoms, 20 residues, 2 models selected  

> select add #1.1/A:587@HE1

97 atoms, 20 residues, 2 models selected  

> select add #1.1/A:594@N

98 atoms, 21 residues, 2 models selected  

> select add #1.1/A:587@CE1

99 atoms, 21 residues, 2 models selected  

> select add #1.1/A:594@CA

100 atoms, 21 residues, 2 models selected  

> select add #1.1/A:526@HZ3

101 atoms, 22 residues, 2 models selected  

> select subtract #1.1/A:507@NH2

100 atoms, 22 residues, 2 models selected  

> select add #1.1/A:507@NH2

101 atoms, 22 residues, 2 models selected  

> select add #1.1/A:526@NZ

102 atoms, 22 residues, 2 models selected  

> select add #1.1/A:370@OD1

103 atoms, 23 residues, 2 models selected  

> select add #1.1/A:370@OD2

104 atoms, 23 residues, 2 models selected  

> select add #1.1/A:370@CG

105 atoms, 23 residues, 2 models selected  

> select add #1.1/A:514@CG2

106 atoms, 24 residues, 2 models selected  

> select add #1.1/A:591@CG

107 atoms, 24 residues, 2 models selected  

> select add #1.1/A:514@HG21

108 atoms, 24 residues, 2 models selected  

> select add #1.1/A:518@OE1

109 atoms, 25 residues, 2 models selected  

> select add #1.1/A:591@OD2

110 atoms, 25 residues, 2 models selected  

> select add #1.1/A:594@HA3

111 atoms, 25 residues, 2 models selected  

> select add #1.1/A:526@CE

112 atoms, 25 residues, 2 models selected  

> select add #1.1/A:523@OD2

113 atoms, 26 residues, 2 models selected  

> select add #1.1/A:518@CG

114 atoms, 26 residues, 2 models selected  

> select add #1.1/A:518@CD

115 atoms, 26 residues, 2 models selected  

> select add #1.1/A:521@NH2

116 atoms, 27 residues, 2 models selected  

> select add #1.1/A:521@HH22

117 atoms, 27 residues, 2 models selected  

> select add #1.1/A:75@OH

118 atoms, 28 residues, 2 models selected  

> select up

470 atoms, 453 bonds, 28 residues, 2 models selected  

> select add #1.1/A:371@CG2

471 atoms, 453 bonds, 29 residues, 2 models selected  

> select add #1.1/A:367@OD1

472 atoms, 453 bonds, 30 residues, 2 models selected  

> select subtract #1.1/A:371@CG2

471 atoms, 453 bonds, 29 residues, 2 models selected  

> select up

482 atoms, 465 bonds, 29 residues, 2 models selected  

> select add #1.1/A:517@HB3

483 atoms, 465 bonds, 30 residues, 2 models selected  

> select up

497 atoms, 480 bonds, 30 residues, 2 models selected  

> show sel atoms

> select ~sel

8436 atoms, 8553 bonds, 518 residues, 3 models selected  

> hide sel surfaces

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select up

401 atoms, 403 bonds, 25 residues, 2 models selected  

> select up

8911 atoms, 9012 bonds, 547 residues, 2 models selected  

> select up

8911 atoms, 9012 bonds, 547 residues, 2 models selected  

> select up

8933 atoms, 9033 bonds, 548 residues, 3 models selected  

> show sel cartoons

> save "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q940E7-pdb70
> (1)/Docked (1)/Q940E7DockingSession.cxs"

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Limonene (1)/Q940E7-pdb70
> (1)/Docked (1)/Q940E7DockingSession.cxs"

opened ChimeraX session  

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Linalool (1)/A0A059SVB0-pdb70
> (1)/Docked (1)/A0A059SVB0_DockSesh.cxs"

opened ChimeraX session  

> ui tool show "Show Sequence Viewer"

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> select add #1.1/A:272@CG1

8447 atoms, 8596 bonds, 528 residues, 2 models selected  

> select add #1.1/A:351@OH

8448 atoms, 8596 bonds, 528 residues, 3 models selected  

> select clear

> select add #1.1/A:424@CG2

1 atom, 1 residue, 1 model selected  

> select add #1.1/A:504@OD1

2 atoms, 2 residues, 2 models selected  

> select add #1.1/A:424@HG22

3 atoms, 2 residues, 2 models selected  

> select up

26 atoms, 24 bonds, 2 residues, 2 models selected  

> select add #1.1/A:499@OH

27 atoms, 24 bonds, 3 residues, 2 models selected  

> select add #1.1/A:506@CD1

28 atoms, 24 bonds, 4 residues, 2 models selected  

> select add #1.1/A:273@N

29 atoms, 24 bonds, 5 residues, 2 models selected  

> select add #1.1/A:269@O

30 atoms, 24 bonds, 6 residues, 2 models selected  

> select add #1.1/A:269@CA

31 atoms, 24 bonds, 6 residues, 2 models selected  

> select add #1.1/A:268@HG23

32 atoms, 24 bonds, 7 residues, 2 models selected  

> select add #1.1/A:269@HG12

33 atoms, 24 bonds, 7 residues, 2 models selected  

> select add #1.1/A:268@CG2

34 atoms, 24 bonds, 7 residues, 2 models selected  

> select add #1.1/A:269@CG1

35 atoms, 24 bonds, 7 residues, 2 models selected  

> select add #1.1/A:269@HG13

36 atoms, 24 bonds, 7 residues, 2 models selected  

> select add #1.1/A:269@CD1

37 atoms, 24 bonds, 7 residues, 2 models selected  

> select add #1.1/A:265@CD2

38 atoms, 24 bonds, 8 residues, 2 models selected  

> select add #1.1/A:269@HD13

39 atoms, 24 bonds, 8 residues, 2 models selected  

> select add #1.1/A:265@HD23

40 atoms, 24 bonds, 8 residues, 2 models selected  

> select add #1.1/A:382@HA3

41 atoms, 24 bonds, 9 residues, 2 models selected  

> select add #1.1/A:382@HA2

42 atoms, 24 bonds, 9 residues, 2 models selected  

> select add #1.1/A:382@N

43 atoms, 24 bonds, 9 residues, 2 models selected  

> select add #1.1/A:382@CA

44 atoms, 24 bonds, 9 residues, 2 models selected  

> select add #1.1/A:381@CG2

45 atoms, 24 bonds, 10 residues, 2 models selected  

> select add #1.1/A:381@HG23

46 atoms, 24 bonds, 10 residues, 2 models selected  

> select add #1.1/A:378@O

47 atoms, 24 bonds, 11 residues, 2 models selected  

> select add #1.1/A:379@HA3

48 atoms, 24 bonds, 12 residues, 2 models selected  

> select add #1.1/A:379@CA

49 atoms, 24 bonds, 12 residues, 2 models selected  

> select add #1.1/A:491@CG2

50 atoms, 24 bonds, 13 residues, 2 models selected  

> select add #1.1/A:491@HG22

51 atoms, 24 bonds, 13 residues, 2 models selected  

> select add #1.1/A:491@CD1

52 atoms, 24 bonds, 13 residues, 2 models selected  

> select add #1.1/A:491@HD13

53 atoms, 24 bonds, 13 residues, 2 models selected  

> select add #1.1/A:491@HG21

54 atoms, 24 bonds, 13 residues, 2 models selected  

> select add #1.1/A:491@HG12

55 atoms, 24 bonds, 13 residues, 2 models selected  

> select add #1.1/A:491@CG1

56 atoms, 24 bonds, 13 residues, 2 models selected  

> select add #1.1/A:252@CD1

57 atoms, 24 bonds, 14 residues, 2 models selected  

> select add #1.1/A:252@HD13

58 atoms, 24 bonds, 14 residues, 2 models selected  

> select add #1.1/A:248@CE3

59 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:248@CZ3

60 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:248@NE1

61 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:248@CD2

62 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:248@CE2

63 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:248@CD1

64 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:248@CG

65 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:269@HG21

66 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:269@CG2

67 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:506@CE2

68 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:269@CB

69 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:269@HA

70 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:506@CG

71 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:506@CD2

72 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:248@HE1

73 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:506@CZ

74 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:506@CE1

75 atoms, 24 bonds, 15 residues, 2 models selected  

> select add #1.1/A:239@NH1

76 atoms, 24 bonds, 16 residues, 2 models selected  

> select add #1.1/A:507@N

77 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:239@HH12

78 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:507@CA

79 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:506@HD1

80 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:506@HB3

81 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:499@CE1

82 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:506@CB

83 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:507@HA3

84 atoms, 24 bonds, 17 residues, 2 models selected  

> select add #1.1/A:431@HH11

85 atoms, 24 bonds, 18 residues, 2 models selected  

> select add #1.1/A:431@NH1

86 atoms, 24 bonds, 18 residues, 2 models selected  

> select add #1.1/A:431@HH21

87 atoms, 24 bonds, 18 residues, 2 models selected  

> select add #1.1/A:428@OE1

88 atoms, 24 bonds, 19 residues, 2 models selected  

> select add #1.1/A:431@NH2

89 atoms, 24 bonds, 19 residues, 2 models selected  
Drag select of A0A059SVB0_Dock1.pdb_A SES surface, 339 of 551208 triangles, 2
atoms, 2 bonds  

> undo

> select add #1.1/A:239@NH2

90 atoms, 24 bonds, 19 residues, 2 models selected  

> select add #1.1/A:276@OD2

91 atoms, 24 bonds, 20 residues, 2 models selected  

> select add #1.1/A:280@OD2

92 atoms, 24 bonds, 21 residues, 2 models selected  

> select add #1.1/A:276@CG

93 atoms, 24 bonds, 21 residues, 2 models selected  

> select add #1.1/A:276@HB2

94 atoms, 24 bonds, 21 residues, 2 models selected  

> select add #1.1/A:276@CB

95 atoms, 24 bonds, 21 residues, 2 models selected  

> select add #1.1/A:272@HG13

96 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:273@HA2

97 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:273@CA

98 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:239@CZ

99 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@O

100 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@C

101 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@CG1

102 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@HG21

103 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@HB

104 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@CG2

105 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@CB

106 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:272@HG12

107 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:378@HA3

108 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:381@CB

109 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:378@CA

110 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:378@C

111 atoms, 24 bonds, 22 residues, 2 models selected  

> select add #1.1/A:416@HE1

112 atoms, 24 bonds, 23 residues, 2 models selected  

> select add #1.1/A:416@CE1

113 atoms, 24 bonds, 23 residues, 2 models selected  

> select add #1.1/A:416@CD1

114 atoms, 24 bonds, 23 residues, 2 models selected  

> select add #1.1/A:416@CZ

115 atoms, 24 bonds, 23 residues, 2 models selected  

> select add #1.1/A:416@HZ

116 atoms, 24 bonds, 23 residues, 2 models selected  

> select add #1.1/A:248@CZ2

117 atoms, 24 bonds, 23 residues, 2 models selected  

> select add #1.1/A:420@OD2

118 atoms, 24 bonds, 24 residues, 2 models selected  

> select add #1.1/A:248@CH2

119 atoms, 24 bonds, 24 residues, 2 models selected  

> select add #1.1/A:416@CE2

120 atoms, 24 bonds, 24 residues, 2 models selected  

> select add #1.1/A:499@HH

121 atoms, 24 bonds, 24 residues, 2 models selected  

> select add #1.1/A:499@CE2

122 atoms, 24 bonds, 24 residues, 2 models selected  

> select add #1.1/A:377@HD11

123 atoms, 24 bonds, 25 residues, 2 models selected  

> select add #1.1/A:377@CD1

124 atoms, 24 bonds, 25 residues, 2 models selected  

> select add #1.1/A:377@O

125 atoms, 24 bonds, 25 residues, 2 models selected  

> select add #1.1/A:377@CG1

126 atoms, 24 bonds, 25 residues, 2 models selected  

> select add #1.1/A:420@OD1

127 atoms, 24 bonds, 25 residues, 2 models selected  

> select add #1.1/A:420@CG

128 atoms, 24 bonds, 25 residues, 2 models selected  

> select add #1.1/A:417@NH2

129 atoms, 24 bonds, 26 residues, 2 models selected  

> select add #1.1/A:377@HD12

130 atoms, 24 bonds, 26 residues, 2 models selected  

> select add #1.1/A:377@CA

131 atoms, 24 bonds, 26 residues, 2 models selected  

> select add #1.1/A:377@C

132 atoms, 24 bonds, 26 residues, 2 models selected  

> select add #1.1/A:377@HA

133 atoms, 24 bonds, 26 residues, 2 models selected  

> select add #1.1/A:376@O

134 atoms, 24 bonds, 27 residues, 2 models selected  

> select add #1.1/A:351@OH

135 atoms, 24 bonds, 28 residues, 2 models selected  

> select add #1.1/A:276@OD1

136 atoms, 24 bonds, 28 residues, 2 models selected  

> select add #1.1/A:417@HH21

137 atoms, 24 bonds, 28 residues, 2 models selected  

> select add #1.1/A:417@HH12

138 atoms, 24 bonds, 28 residues, 2 models selected  

> select add #1.1/A:417@NH1

139 atoms, 24 bonds, 28 residues, 2 models selected  

> select add #1.1/A:369@OH

140 atoms, 24 bonds, 29 residues, 2 models selected  

> select add #1.1/A:421@OD1

141 atoms, 24 bonds, 30 residues, 2 models selected  

> select add #1.1/A:436@CA

142 atoms, 24 bonds, 31 residues, 2 models selected  

> select add #1.1/A:369@CE2

143 atoms, 24 bonds, 31 residues, 2 models selected  

> select add #1.1/A:369@HH

144 atoms, 24 bonds, 31 residues, 2 models selected  

> select add #1.1/A:436@HA

145 atoms, 24 bonds, 31 residues, 2 models selected  

> select add #1.1/A:436@CB

146 atoms, 24 bonds, 31 residues, 2 models selected  

> select add #1.1/A:428@CD

147 atoms, 24 bonds, 31 residues, 2 models selected  

> select add #1.1/A:428@OE2

148 atoms, 24 bonds, 31 residues, 2 models selected  

> select add #1.1/A:433@OD2

149 atoms, 24 bonds, 32 residues, 2 models selected  

> select add #1.1/A:431@HH22

150 atoms, 24 bonds, 32 residues, 2 models selected  

> select add #1.1/A:433@CG

151 atoms, 24 bonds, 32 residues, 2 models selected  

> select add #1.1/A:428@CG

152 atoms, 24 bonds, 32 residues, 2 models selected  

> select add #1.1/A:280@HB2

153 atoms, 24 bonds, 32 residues, 2 models selected  

> select add #1.1/A:280@CB

154 atoms, 24 bonds, 32 residues, 2 models selected  

> select add #1.1/A:280@CG

155 atoms, 24 bonds, 32 residues, 2 models selected  

> select add #1.1/A:279@CB

156 atoms, 24 bonds, 33 residues, 2 models selected  

> select add #1.1/A:279@HB2

157 atoms, 24 bonds, 33 residues, 2 models selected  

> select add #1.1/A:276@O

158 atoms, 24 bonds, 33 residues, 2 models selected  

> select add #1.1/A:351@CD1

159 atoms, 24 bonds, 33 residues, 2 models selected  

> select add #1.1/A:376@CB

160 atoms, 24 bonds, 33 residues, 2 models selected  

> select add #1.1/A:351@CE1

161 atoms, 24 bonds, 33 residues, 2 models selected  

> select add #1.1/A:351@HE1

162 atoms, 24 bonds, 33 residues, 2 models selected  

> select add #1.1/A:354@OE2

163 atoms, 24 bonds, 34 residues, 2 models selected  

> select add #1.1/A:354@CD

164 atoms, 24 bonds, 34 residues, 2 models selected  

> select add #1.1/A:351@O

165 atoms, 24 bonds, 34 residues, 2 models selected  

> select add #1.1/A:351@CB

166 atoms, 24 bonds, 34 residues, 2 models selected  

> select add #1.1/A:351@CG

167 atoms, 24 bonds, 34 residues, 2 models selected  

> select add #1.1/A:276@HA

168 atoms, 24 bonds, 34 residues, 2 models selected  

> select add #1.1/A:351@CD2

169 atoms, 24 bonds, 34 residues, 2 models selected  

> select up

542 atoms, 526 bonds, 34 residues, 2 models selected  

> select add #1.1/A:434@CG1

543 atoms, 526 bonds, 35 residues, 2 models selected  

> select add #1.1/A:434@O

544 atoms, 526 bonds, 35 residues, 2 models selected  

> select add #1.1/A:435@C

545 atoms, 526 bonds, 36 residues, 2 models selected  

> select add #1.1/A:434@HG12

546 atoms, 526 bonds, 36 residues, 2 models selected  

> select add #1.1/A:434@HG11

547 atoms, 526 bonds, 36 residues, 2 models selected  

> select add #1.1/A:434@HG13

548 atoms, 526 bonds, 36 residues, 2 models selected  

> select add #1.1/A:434@HB

549 atoms, 526 bonds, 36 residues, 2 models selected  

> select add #1.1/A:434@CB

550 atoms, 526 bonds, 36 residues, 2 models selected  

> select add #1.1/A:358@HB2

551 atoms, 526 bonds, 37 residues, 2 models selected  

> select add #1.1/A:358@CB

552 atoms, 526 bonds, 37 residues, 2 models selected  

> select add #1.1/A:434@N

553 atoms, 526 bonds, 37 residues, 2 models selected  

> select add #1.1/A:355@HB1

554 atoms, 526 bonds, 38 residues, 2 models selected  

> select add #1.1/A:355@N

555 atoms, 526 bonds, 38 residues, 2 models selected  

> select up

603 atoms, 589 bonds, 38 residues, 2 models selected  

> show sel atoms

> select clear

> undo

> select clear

> select #1.1/A:508

16 atoms, 15 bonds, 1 residue, 1 model selected  

> select #1.1/A:507-508

23 atoms, 22 bonds, 2 residues, 1 model selected  

> select clear

> select #1.1/A:507

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #1.1/A:507

7 atoms, 6 bonds, 1 residue, 1 model selected  

> hide sel surfaces

> select up

136 atoms, 136 bonds, 11 residues, 2 models selected  

> select down

7 atoms, 6 bonds, 1 residue, 2 models selected  

> select down

7 atoms, 6 bonds, 1 residue, 2 models selected  

> select clear

Drag select of A0A059SVB0_Dock1.pdb_A SES surface, 103 of 551208 triangles  

> select #1.1/A:248@CD1

1 atom, 1 residue, 1 model selected  

> select #1.1/A:507

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #1.1/A:507

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel surfaces

> hide sel surfaces

> hide sel atoms

> save "C:/Users/catha/Downloads/Docked (1)/Linalool (1)/A0A059SVB0-pdb70
> (1)/Docked (1)/A0A059SVB0DockSession.cxs"

> close session

> open "C:/Users/catha/Downloads/Docked (1)/Linalool (1)/F8TWD2-pdb70
> (1)/Docked (1)/F8TWD2_Dock1 (1).pdb"

Summary of feedback from opening C:/Users/catha/Downloads/Docked (1)/Linalool
(1)/F8TWD2-pdb70 (1)/Docked (1)/F8TWD2_Dock1 (1).pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 5
SER A 21 1 17  
Start residue of secondary structure not found: HELIX 2 2 PRO A 25 ARG A 37 1
13  
Start residue of secondary structure not found: HELIX 3 3 ALA A 41 HIS A 43 1
3  
Start residue of secondary structure not found: HELIX 4 4 GLU A 45 LEU A 54 1
10  
Start residue of secondary structure not found: HELIX 5 5 LEU A 63 GLN A 75 1
13  
23 messages similar to the above omitted  
  
Chain information for F8TWD2_Dock1 (1).pdb  
---  
Chain | Description  
1.1/A | No description available  
  

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

22 atoms, 21 bonds, 1 residue, 1 model selected  

> color sel magenta

> select sel @ show sel surfaces

> undo

> hide sel surfaces

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

22 atoms, 21 bonds, 1 residue, 1 model selected  

> select sel @ show sel surfaces

> select up

1561 atoms, 1559 bonds, 92 residues, 3 models selected  

> select up

3588 atoms, 3617 bonds, 216 residues, 3 models selected  

> select up

8301 atoms, 8387 bonds, 515 residues, 3 models selected  

> select up

8301 atoms, 8387 bonds, 515 residues, 3 models selected  

> select up

8301 atoms, 8387 bonds, 515 residues, 4 models selected  

> hide sel cartoons

> select #1.1/A:472@HG

1 atom, 1 residue, 1 model selected  

> select up

19 atoms, 18 bonds, 1 residue, 2 models selected  

> select up

290 atoms, 291 bonds, 18 residues, 2 models selected  

> select up

8279 atoms, 8366 bonds, 514 residues, 2 models selected  

> select up

8279 atoms, 8366 bonds, 514 residues, 2 models selected  

> undo

> hide sel surfaces

> select #1.1/A:136

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select #1.2/?:1@C7

1 atom, 1 residue, 1 model selected  

> select up

22 atoms, 21 bonds, 1 residue, 1 model selected  

> select up

8301 atoms, 8387 bonds, 515 residues, 2 models selected  

> select down

22 atoms, 21 bonds, 1 residue, 2 models selected  

> select sel @ show sel surfaces

> select #1.1/A:175

12 atoms, 11 bonds, 1 residue, 1 model selected  

> select up

231 atoms, 233 bonds, 14 residues, 2 models selected  

> select up

8279 atoms, 8366 bonds, 514 residues, 2 models selected  

> select up

8279 atoms, 8366 bonds, 514 residues, 2 models selected  

> hide sel cartoons

> select #1.1/A:242@OE1

1 atom, 1 residue, 1 model selected  

> select add #1.1/A:241@CZ

2 atoms, 2 residues, 2 models selected  

> select add #1.1/A:241@CE1

3 atoms, 2 residues, 2 models selected  

> select add #1.1/A:478@NH1

4 atoms, 3 residues, 2 models selected  

> select add #1.1/A:475@ND2

5 atoms, 4 residues, 2 models selected  

> select add #1.1/A:166@CG

6 atoms, 5 residues, 2 models selected  

> select add #1.1/A:475@HD21

7 atoms, 5 residues, 2 models selected  

> select add #1.1/A:475@OD1

8 atoms, 5 residues, 2 models selected  

> select add #1.1/A:240@CG2

9 atoms, 6 residues, 2 models selected  

> select add #1.1/A:467@HG2

10 atoms, 7 residues, 2 models selected  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.13558 Core Profile Forward-Compatible Context 26.20.11008.6001
OpenGL renderer: AMD Radeon(TM) Vega 8 Graphics
OpenGL vendor: ATI Technologies Inc.
Manufacturer: HP
Model: HP ENVY x360 Convertible 15-cp0xxx
OS: Microsoft Windows 10 Home (Build 19044)
Memory: 7,469,842,432
MaxProcessMemory: 137,438,953,344
CPU: 8 AMD Ryzen 5 2500U with Radeon Vega Mobile Gfx  
OSLanguage: en-GB
Locale: ('en_GB', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

[Eric Pettersen]

Hi Cathal,

Thanks for reporting this problem. Do you remember what you were doing when the crash occurred?

--Eric

Eric Pettersen
UCSF Computer Graphics Lab