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#7069 closed defect (duplicate)

Surface session restore: updaters is None

Reported by:	chimerax-bug-report@…	Owned by:	Tom Goddard
Priority:	normal	Milestone:
Component:	Sessions	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.1 (2020-09-09)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open "E:/PTH1R paper2/pth34-9.cxs"

Error opening map "E:\PTH1R paper2\pth34-11.cxs": File pth34-11.cxs, format
mrc  
MRC header value nsymbt (1701082415) is invalid  
  

restore_snapshot for "Volume" returned None  

restore_snapshot for "VolumeSurface" returned None  

Log from Fri Jun 10 12:41:48 2022UCSF ChimeraX version: 1.1 (2020-09-09)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open "E:/PTH1R paper2/pth34-8.cxs"

Log from Thu Jun 9 18:14:05 2022UCSF ChimeraX version: 1.1 (2020-09-09)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "E:/PTH1R paper2/1.mrc"

Opened 1.mrc, grid size 300,300,300, pixel 0.824, shown at level 0.00136, step
2, values float32  

> volume #1 step 1

> open "E:/PTH1R paper2/PTH34-PTH1R-G112 Model2_2-coot-14(1).pdb"

Summary of feedback from opening E:/PTH1R paper2/PTH34-PTH1R-G112
Model2_2-coot-14(1).pdb  
---  
warning | Ignored bad PDB record found on line 9561  
END  
  
Chain information for PTH34-PTH1R-G112 Model2_2-coot-14(1).pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
G | No description available  
N | No description available  
P | No description available  
R | No description available  
  

> volume #1 level 0.1021

> color zone #2 near all distance 7

> lighting soft

> hide atoms

> lighting soft

> color zone #1 near all distance 7

> volume #1 level 0.1758

> volume #1 level 0.04788

> volume #1 level 0.01829

> select ::name="CLR"

140 atoms, 155 bonds, 5 residues, 1 model selected  

> color sel yellow

> select ::name="PLM"

54 atoms, 51 bonds, 3 residues, 1 model selected  

> color sel orange

> select /A

1950 atoms, 1989 bonds, 2 pseudobonds, 235 residues, 2 models selected  

> ui tool show "Color Actions"

> color sel medium purple

> select /B

2615 atoms, 2662 bonds, 341 residues, 1 model selected  

> color sel light blue

> select /G

437 atoms, 443 bonds, 57 residues, 1 model selected  

> color sel rosy brown

> select /N

984 atoms, 1007 bonds, 129 residues, 1 model selected  

> color sel peru

> select /P

289 atoms, 294 bonds, 34 residues, 1 model selected  

> color sel cadet blue

> select /R

3142 atoms, 3246 bonds, 8 pseudobonds, 367 residues, 2 models selected  

> color sel cadet blue

> select /P

289 atoms, 294 bonds, 34 residues, 1 model selected  

> color sel salmon

> color zone #1 near all distance 7

> show sel atoms

> show sel atoms

> hide sel atoms

> select ::name="CLR"

140 atoms, 155 bonds, 5 residues, 1 model selected  

> show sel atoms

> color sel yellow

> select ::name="PLM"

54 atoms, 51 bonds, 3 residues, 1 model selected  

> show sel atoms

> color sel orange

> color zone #1 near all distance 7

> surface dust #1 size 10

> surface dust #1 size 5

> select clear

> ui mousemode right "map eraser"

> volume erase #1 center 195.16,202.37,60.742 radius 35.63

> color zone #1 near all distance 7

> hide #!4 models

> show #!4 models

> show #!1 models

> hide #!1 models

> color zone #4 near all distance 7

> surface dust #4 size 5

> volume erase #4 center 126.75,87.48,65.635 radius 35.597

> hide #!2 models

> volume erase #4 center 197.68,140.53,98.654 radius 22.619

> volume erase #4 center 201.25,162.84,137.1 radius 22.619

> volume erase #4 center 34.442,90.191,70.935 radius 22.619

> volume erase #4 center 87.637,53.443,114.64 radius 22.619

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>  
action.triggered.connect(lambda arg, cb = callback: cb())  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 47, in display  
self._current_option)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\manager.py", line 91, in
save_args_string_from_widget  
provider_info.format_name, self).save_args_string_from_widget(widget)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\map\\__init__.py", line 189, in save_args_string_from_widget  
return widget.options_string()  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\options.py", line 35, in options_string  
raise UserError("No %s to save" % self._name.lower())  
AttributeError: 'SaveModelOptionWidget' object has no attribute '_name'  
  
AttributeError: 'SaveModelOptionWidget' object has no attribute '_name'  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\options.py", line 35, in options_string  
raise UserError("No %s to save" % self._name.lower())  
  
See log for complete Python traceback.  
  

> save "E:/PTH1R paper2/pth34-6.cxs"

> volume erase #4 center 104.88,79.748,76.754 radius 22.619

> volume erase #4 center 188.82,149.41,134.94 radius 8.034

> volume erase #4 center 174.08,148.46,116.39 radius 8.034

> volume erase #4 center 131.05,181.05,144.19 radius 8.034

> save 20220609PTH34-1.tif width 2000 height 2000 supersample 3
> transparentBackground true

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> save "E:/PTH1R paper2/pth34-6.cxs"

> open "E:/PTH1R paper2/ZLH_high2d7PTH34.mrc"

Opened ZLH_high2d7PTH34.mrc, grid size 300,300,300, pixel 0.824, shown at
level 0.0184, step 2, values float32  

> volume #5 step 1

> hide #!4 models

> color #5 light gray

> lighting simple

> show #!4 models

> volume #5 level 0.018

> volume #5 level 0.01554

> ui mousemode right "map eraser"

> hide #!4 models

> volume erase #5 center 108.1,94.099,208.54 radius 41.159

> volume erase #6 center 120.26,98.788,211.27 radius 41.159

> volume erase #6 center 126.84,99.84,213.31 radius 41.159

> volume erase #6 center 102.64,102.21,211.86 radius 41.159

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

Can only have one displayed volume when erasing  

> hide #!4 models

> show #!5 models

> hide #!5 models

> hide #3 models

> ui mousemode right "map eraser"

> volume erase #6 center 205.96,158.84,46.908 radius 41.159

> volume erase #6 center 189.03,181.31,23.095 radius 41.159

> volume erase #6 center 188.77,224.74,55.175 radius 41.159

> volume erase #6 center 193.84,214.1,55.007 radius 41.159

> show #!5 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> show #!4 models

> hide #!4 models

> volume erase #6 center 198.79,163.12,67.385 radius 41.159

> volume erase #6 center 212.42,166.89,92.103 radius 41.159

> volume erase #6 center 180.02,147.36,56.072 radius 41.159

> volume erase #6 center 195.24,117.98,63.697 radius 41.159

> show #!4 models

> hide #!4 models

> volume erase #6 center 218,130.06,91.906 radius 41.159

> volume erase #6 center 147.18,212.49,137.75 radius 41.159

> show #!4 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!4 models

> save "E:/PTH1R paper2/pth34-7.cxs"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>  
action.triggered.connect(lambda arg, cb = callback: cb())  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 47, in display  
self._current_option)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\manager.py", line 91, in
save_args_string_from_widget  
provider_info.format_name, self).save_args_string_from_widget(widget)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\map\\__init__.py", line 189, in save_args_string_from_widget  
return widget.options_string()  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\options.py", line 35, in options_string  
raise UserError("No %s to save" % self._name.lower())  
AttributeError: 'SaveModelOptionWidget' object has no attribute '_name'  
  
AttributeError: 'SaveModelOptionWidget' object has no attribute '_name'  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\options.py", line 35, in options_string  
raise UserError("No %s to save" % self._name.lower())  
  
See log for complete Python traceback.  
  

> save "E:/PTH1R paper2/PTH34 Clean map.mrc" models #6

> show #!4 models

> hide #!6 models

> lighting soft

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> hide #!4 models

> show #!6 models

> volume erase #6 center 30.665,100.27,142.45 radius 41.159

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>  
action.triggered.connect(lambda arg, cb = callback: cb())  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 47, in display  
self._current_option)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\manager.py", line 91, in
save_args_string_from_widget  
provider_info.format_name, self).save_args_string_from_widget(widget)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\map\\__init__.py", line 189, in save_args_string_from_widget  
return widget.options_string()  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\options.py", line 35, in options_string  
raise UserError("No %s to save" % self._name.lower())  
AttributeError: 'SaveModelOptionWidget' object has no attribute '_name'  
  
AttributeError: 'SaveModelOptionWidget' object has no attribute '_name'  
  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\options.py", line 35, in options_string  
raise UserError("No %s to save" % self._name.lower())  
  
See log for complete Python traceback.  
  

> save "E:/PTH1R paper2/PTH34 Clean map.mrc" models #6

> hide #!6 models

> show #!4 models

> lighting simple

> lighting simple

> lighting soft

> lighting full

> lighting full

> lighting soft

> show #!6 models

> hide #!6 models

> show #!6 models

> lighting simple

> hide #!4 models

> hide #!6 models

> show #!4 models

> lighting soft

> save 20220609PTH34-1.tif width 2000 height 2000 supersample 3
> transparentBackground true

> save 20220609PTH34-1.tif width 2000 height 2000 supersample 3
> transparentBackground true

> save 20220609PTH34-1.tif width 2000 height 2000 supersample 3
> transparentBackground true

> hide #!4 models

> show #!6 models

> lighting simple

> save 20220609PTH34-2.tif width 2000 height 2000 supersample 3
> transparentBackground true

> hide #!6 models

> show #!2 models

> show cartoons

> hide #2.1 models

> save 20220609PTH34-3.tif width 2000 height 2000 supersample 3
> transparentBackground true

> save 20220609PTH34-3.tif width 2000 height 2000 supersample 3
> transparentBackground true

> save 20220609PTH34-3.tif width 2000 height 2000 supersample 3
> transparentBackground true

> hide #!2 models

> show #!5 models

> save 20220609PTH34-2.tif width 2000 height 2000 supersample 3
> transparentBackground true

> hide #!5 models

> show #!6 models

> save 20220609PTH34-2.tif width 2000 height 2000 supersample 3
> transparentBackground true

> save 20220609PTH34-2.tif width 2000 height 2000 supersample 3
> transparentBackground true

> hide #!6 models

> show #!4 models

> lighting soft

> save 20220609PTH34-1.tif width 2000 height 2000 supersample 3
> transparentBackground true

> ui tool show "Color Actions"

> help help:user

> save "E:/PTH1R paper2/pth34-8.cxs"

opened ChimeraX session  

> show #!5 models

> hide #!5 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> open "E:/PTH1R paper2/0101_allpth34refiment.mrc"

Opened 0101_allpth34refiment.mrc, grid size 300,300,300, pixel 0.824, shown at
level 0.00358, step 2, values float32  

> volume #3 step 1

> lighting simple

> volume #3 level 0.002956

> volume #3 level 0.002642

> color #3 white

> transparency #3 10

> transparency #3 50

> ui tool show "Color Actions"

> color alice blue

> color white

> color silver

> color light gray

> color alice blue

> color light gray

> color silver

> save "E:/PTH1R paper2/pth34-9.cxs"

restore_snapshot for "Redust" returned None  

restore_snapshot for "ZoneColor" returned None  

Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 683, in restore  
obj = sm.restore_snapshot(self, data)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\surface\updaters.py", line 26, in restore_snapshot  
return SurfaceUpdaters(data['updaters'])  
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\surface\updaters.py", line 10, in __init__  
self._updaters = WeakSet(updaters)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\\_weakrefset.py", line 50, in
__init__  
self.update(data)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\\_weakrefset.py", line 120, in
update  
self.add(element)  
File "C:\Program Files\ChimeraX 1.1\bin\lib\\_weakrefset.py", line 84, in add  
self.data.add(ref(item, self._remove))  
TypeError: cannot create weak reference to 'NoneType' object  
  
opened ChimeraX session  




OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 1650 SUPER/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: IPASON
Model:  
OS: Microsoft Windows 10 家庭中文版 (Build 19044)
Memory: 17,130,639,360
MaxProcessMemory: 137,438,953,344
CPU: 6 AMD Ryzen 5 3500X 6-Core Processor             "
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.0
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    gdcm: 2.8.8
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5+mkl
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pywin32: 228
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2
    WMI: 1.5.1

Change History (3)

comment:1 by pett, 3 years ago

Component:	Unassigned → Sessions
Owner:	set to Tom Goddard
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Surface session restore: updaters is None

version 1.1

comment:2 by Tom Goddard, 3 years ago

Fixed more than a year ago. Restoring a session when a surface was missing (probably volume surface with data not found).

comment:3 by Tom Goddard, 3 years ago

Resolution:	→ duplicate
Status:	assigned → closed

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