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#7194 closed defect (can't reproduce)

Crash using File→Open on Windows

Reported by:	chimerax-bug-report@…	Owned by:	Eric Pettersen
Priority:	normal	Milestone:
Component:	Platform	Version:
Keywords:		Cc:	Tom Goddard
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description (last modified by Eric Pettersen)

The following bug report has been submitted:
Platform:        Windows-10-10.0.19042
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00005af8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\Windows fatal exception: code 0xli8001010e

b\thWindows fatal exception: code 0x8001010e

reading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
Windows fatal exception: code 0x8001010e

  File "Windows fatal exception: code 0x8001010e

C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Windows fatal exception: code 0x8001010e

Thread 0x00005530 (most recent call first):
Windows fatal exception: code 0x8001010e

  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimWindows fatal exception: code 0x8001010e

erWindows fatal exception: code 0x8001010e

aX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00005af8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00005af8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\Windows fatal exception: code 0xCh8001010e

imWindows fatal exception: ercode 0x8001010e

aX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.Windows fatal exception: code 0xpy8001010e

", line Windows fatal exception: code 0x499 in 8001010e

_wait_for_updates
  File "C:\Program Files\ChimeWindows fatal exception: code 0x8001010e

rWindows fatal exception: aXcode 0x 18001010e

.3\bin\lib\multiprocWindows fatal exception: Windows fatal exception: code 0x8001010e

esscode 0x8001010eWindows fatal exception: code 0x8001010eing



\pooWindows fatal exception: code 0x8001010e

l.pyWindows fatal exception: code 0x", line 8001010e

519 in Windows fatal exception: code 0x_h8001010e

andle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.pWindows fatal exception: code 0x8001010ey

", line 930 in _Windows fatal exception: code 0xb8001010e

ootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threadinWindows fatal exception: gcode 0x.8001010ep

y", line 930Windows fatal exception: code 0x8001010e in _

bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.Windows fatal exception: code 0x8001010epy"

, line 910 in Windows fatal exception: code 0xrun8001010e


  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.pWindows fatal exception: code 0x8001010ey", line 

114 in Windows fatal exception: code 0xwo8001010e

rker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.pWindows fatal exception: code 0x8001010ey", line 

910 in Windows fatal exception: code 0x8001010erun


  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.pWindows fatal exception: code 0xy", line 8001010e

910Windows fatal exception: code 0x in ru8001010e

n
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program FiWindows fatal exception: code 0xles8001010e

\CWindows fatal exception: code 0xhim8001010e

eraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Windows fatal exception: code 0xFil8001010e

esWindows fatal exception: code 0x\Ch8001010e

imeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00005af8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py"Windows fatal exception: code 0x, line 973 in 8001010e

_Windows fatal exception: code 0xboo8001010e

tstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
Windows fatal exception: code 0x8001010e  File "C

:Windows fatal exception: code 0x\P8001010e

rogram Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimWindows fatal exception: code 0xera8001010e

X 1Windows fatal exception: code 0x.3\8001010e

bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessinWindows fatal exception: code 0x8001010eg\c

onWindows fatal exception: code 0xnec8001010e

tion.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connectionWindows fatal exception: code 0x8001010e

.pWindows fatal exception: code 0xy", line 8001010e

884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _waitWindows fatal exception: code 0x8001010e_fo

r_uWindows fatal exception: code 0x8001010epda

tes
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handWindows fatal exception: code 0x8001010ele

_woWindows fatal exception: code 0x8001010erke

rs
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\binWindows fatal exception: code 0x\li8001010e

bWindows fatal exception: code 0x8001010e

\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\thWindows fatal exception: code 0x8001010erea

dWindows fatal exception: code 0x8001010eing

.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1Windows fatal exception: code 0x.3\8001010e

biWindows fatal exception: code 0xn\l8001010e

ib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiproWindows fatal exception: code 0x8001010ecessing\

poWindows fatal exception: code 0x8001010eol.

py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\binWindows fatal exception: code 0x\li8001010e

bWindows fatal exception: code 0x\th8001010e

reading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\poolWindows fatal exception: code 0x8001010e.py

"Windows fatal exception: code 0x, line 114 in 8001010e

worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program FilWindows fatal exception: code 0x8001010ees\

CWindows fatal exception: code 0x8001010ehim

eraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
Windows fatal exception: code 0x8001010e  File "C

:\Windows fatal exception: code 0xPro8001010e

gram Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\thWindows fatal exception: code 0x8001010erea

dinWindows fatal exception: code 0x8001010eg.p

y", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "CWindows fatal exception: code 0x:\P8001010e

roWindows fatal exception: code 0xgra8001010e

m Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.Windows fatal exception: code 0x8001010e3\b

in\Windows fatal exception: code 0x8001010elib

\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimWindows fatal exception: code 0x8001010e

eWindows fatal exception: code 0xraX8001010e

 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

[deleted a bunch of this]

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\Windows fatal exception: code 0xbin8001010e

\Windows fatal exception: code 0x8001010elib\

Windows fatal exception: code 0x8001010e

mulWindows fatal exception: tiprocessing\pWindows fatal exception: code 0x8001010e

oWindows fatal exception: code 0xcode 0x8001010eo

l.py", line 576 in _handle_resWindows fatal exception: 8001010ecode 0xu8001010e

lt

sWindows fatal exception: code 0x8001010e


Windows fatal exception: code 0x8001010e

  File Windows fatal exception: "Ccode 0x8001010e

:\ProgramWindows fatal exception: code 0x8001010e F

iWindows fatal exception: code 0xles8001010e

\ChimeraX 1.3\bWindows fatal exception: code 0x8001010ein\lib\threading.py", line 910 in run
  File "C:\Program

Windows fatal exception: code 0x8001010e

 Files\CWindows fatal exception: code 0xhi8001010e

mWindows fatal exception: code 0x8001010e

eraX 1.3\bin\lib\threading.py", line 973 in _bootstWindows fatal exception: rap_inncode 0xe8001010e

r
  File "CWindows fatal exception: code 0x:8001010e

\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in Windows fatal exception: _code 0x8001010eh

andWindows fatal exception: code 0x8001010e

le_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.pyWindows fatal exception: code 0x", line 8001010e

114Windows fatal exception: code 0x in w8001010e

orker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\thWindows fatal exception: code 0x8001010e

reWindows fatal exception: code 0x8001010e

ading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeWindows fatal exception: rcode 0x8001010e

aX Windows fatal exception: code 0x8001010e

1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimWindows fatal exception: ecode 0xr8001010e

aX Windows fatal exception: code 0x8001010e

1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program FiWindows fatal exception: lcode 0xe8001010e

s\Windows fatal exception: code 0x8001010e

ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\PWindows fatal exception: code 0xro8001010e

gram FiWindows fatal exception: code 0x8001010e

les\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraXWindows fatal exception:  code 0x8001010e

1.3Windows fatal exception: code 0x8001010e

\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\ProgWindows fatal exception: code 0xr8001010ea

m FiWindows fatal exception: code 0x8001010e

les\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\PWindows fatal exception: code 0xro8001010e

grWindows fatal exception: code 0xam8001010e

 Files\ChimeraX 1.3\bin\lib\threading.pWindows fatal exception: code 0x8001010e

y"Windows fatal exception: code 0x, line 9108001010e

 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1Windows fatal exception: code 0x8001010e

.3Windows fatal exception: code 0x\bi8001010e

n\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050Windows fatal exception: code 0x8001010e

 (most recent call first):
Windows fatal exception: code 0x  File "8001010e

C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\Windows fatal exception: code 0xcon8001010e

nWindows fatal exception: eccode 0x8001010e

tion.py", line 884 in wait
  File "C:\ProgWindows fatal exception: code 0x8001010e

rWindows fatal exception: code 0x8001010e

am Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updateWindows fatal exception: code 0x8001010e

s
  File Windows fatal exception: code 0x8001010e

"C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pooWindows fatal exception: code 0x8001010e

l.Windows fatal exception: code 0x8001010e

py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\thWindows fatal exception: code 0xre8001010e

aWindows fatal exception: dicode 0x8001010e

ng.py", line 910 in run
  File "C:\Program Files\ChimWindows fatal exception: code 0x8001010e

eWindows fatal exception: racode 0x8001010e

X 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threaWindows fatal exception: code 0x8001010e

dWindows fatal exception: code 0x8001010e

ing.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.Windows fatal exception: code 0x8001010e

py"Windows fatal exception: code 0x8001010e

, line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\PWindows fatal exception: code 0x8001010e

rWindows fatal exception: code 0x8001010e

ogram Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program FWindows fatal exception: code 0x8001010e

ilWindows fatal exception: code 0x8001010e

es\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\tWindows fatal exception: code 0x8001010e

hreWindows fatal exception: code 0xadi8001010e

ng.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00004324 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004f90 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004050 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005ad0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000049ec (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraXWindows fatal exception: code 0x8001010e

 1.3Windows fatal exception: code 0x8001010e

\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\ProgramWindows fatal exception: code 0x Fi8001010e

lesWindows fatal exception: code 0x8001010e

\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005530 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\libWindows fatal exception: code 0x8001010e

\threading.py"Windows fatal exception: code 0x, line 9738001010e

 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000535c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00003cd8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000561c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000047e8 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00002280 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00004550 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x000054a0 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000584c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00005474 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x0000564c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1284 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45.cxs" format session

Opened job7resampled.mrc as #1.1, grid size 320,320,320, pixel 1.1, shown at
step 1, values float32  
Opened job66_class001_filt4p5.mrc as #1.3, grid size 320,320,320, pixel 1.1,
shown at step 1, values float32  
Opened job83_run_class001filt4p5.mrc as #1.4, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job96_class001_filt4p5.mrc as #1.7, grid size 320,320,320, pixel 1.1,
shown at level 0.00363, step 1, values float32  
Opened job125_E_class001.mrc as #1.10, grid size 320,320,320, pixel 1.1, shown
at level 0.00241, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #6.1, grid size 320,320,320, pixel 1.1,
shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #6.2, grid size 320,320,320, pixel 1.1,
shown at level 0.0032, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #11.1, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #11.2, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #12, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 gaussian as #14, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #18.1, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #20.1, grid size 320,320,320, pixel
1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #24.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #26.1, grid size 320,320,320, pixel
1.1, shown at level 0.002, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #27.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #27.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #29.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #29.2, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #29.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 3 as #29.4, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 4 as #29.5, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 5 as #29.6, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 6 as #29.7, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 7 as #29.8, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 8 as #29.9, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #30, grid size 320,320,320,
pixel 1.1, shown at level 0.0024, step 1, values float32  

registering illegal selector name "active site"  

registering illegal selector name "SHP binding"  

registering illegal selector name "old_SDS22_withClash"  

registering illegal selector name "SHPP-Binding_C"  

opened ChimeraX session  

> select clear

> select #9/D:76

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select up

131 atoms, 130 bonds, 17 residues, 1 model selected  

> select up

5913 atoms, 6011 bonds, 753 residues, 1 model selected  

> close
> #2-5,10,13,17,19,21-23,25,31#1,6-8,11-12,14-16,18,20,24,26-30,32#1.1,3-4,7,10#11.1-2#20.1#29.1-9

> select ~sel

34519 atoms, 35076 bonds, 4419 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/YASARA/p97_D.mol2"

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45.cxs" format session

Opened job7resampled.mrc as #1.1, grid size 320,320,320, pixel 1.1, shown at
step 1, values float32  
Opened job66_class001_filt4p5.mrc as #1.3, grid size 320,320,320, pixel 1.1,
shown at step 1, values float32  
Opened job83_run_class001filt4p5.mrc as #1.4, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job96_class001_filt4p5.mrc as #1.7, grid size 320,320,320, pixel 1.1,
shown at level 0.00363, step 1, values float32  
Opened job125_E_class001.mrc as #1.10, grid size 320,320,320, pixel 1.1, shown
at level 0.00241, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #6.1, grid size 320,320,320, pixel 1.1,
shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #6.2, grid size 320,320,320, pixel 1.1,
shown at level 0.0032, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #11.1, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #11.2, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #12, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 gaussian as #14, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #18.1, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #20.1, grid size 320,320,320, pixel
1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #24.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #26.1, grid size 320,320,320, pixel
1.1, shown at level 0.002, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #27.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #27.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #29.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #29.2, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #29.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 3 as #29.4, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 4 as #29.5, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 5 as #29.6, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 6 as #29.7, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 7 as #29.8, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 8 as #29.9, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #30, grid size 320,320,320,
pixel 1.1, shown at level 0.0024, step 1, values float32  

registering illegal selector name "active site"  

registering illegal selector name "SHP binding"  

registering illegal selector name "old_SDS22_withClash"  

registering illegal selector name "SHPP-Binding_C"  

opened ChimeraX session  

> select #9/D:441

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select clear

> select #9/E:46

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

50 atoms, 50 bonds, 6 residues, 1 model selected  

> select up

5913 atoms, 6011 bonds, 753 residues, 1 model selected  

> close
> #2-5,10,13,17,19,21-23,25,31#1,6-8,11-12,14-16,18,20,24,26-30,32#1.1,3-4,7,10#11.1-2#20.1#29.1-9

> select ~sel

34519 atoms, 35076 bonds, 4419 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/YASARA/p97_E.mol2"

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45.cxs" format session

Opened job7resampled.mrc as #1.1, grid size 320,320,320, pixel 1.1, shown at
step 1, values float32  
Opened job66_class001_filt4p5.mrc as #1.3, grid size 320,320,320, pixel 1.1,
shown at step 1, values float32  
Opened job83_run_class001filt4p5.mrc as #1.4, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job96_class001_filt4p5.mrc as #1.7, grid size 320,320,320, pixel 1.1,
shown at level 0.00363, step 1, values float32  
Opened job125_E_class001.mrc as #1.10, grid size 320,320,320, pixel 1.1, shown
at level 0.00241, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #6.1, grid size 320,320,320, pixel 1.1,
shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #6.2, grid size 320,320,320, pixel 1.1,
shown at level 0.0032, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #11.1, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #11.2, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #12, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 gaussian as #14, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #18.1, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #20.1, grid size 320,320,320, pixel
1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #24.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #26.1, grid size 320,320,320, pixel
1.1, shown at level 0.002, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #27.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #27.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #29.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #29.2, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #29.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 3 as #29.4, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 4 as #29.5, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 5 as #29.6, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 6 as #29.7, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 7 as #29.8, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 8 as #29.9, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #30, grid size 320,320,320,
pixel 1.1, shown at level 0.0024, step 1, values float32  

registering illegal selector name "active site"  

registering illegal selector name "SHP binding"  

registering illegal selector name "old_SDS22_withClash"  

registering illegal selector name "SHPP-Binding_C"  

opened ChimeraX session  

> select #13/A:225

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select up

325 atoms, 328 bonds, 23 residues, 1 model selected  

> select up

1858 atoms, 1870 bonds, 117 residues, 1 model selected  

> show sel cartoons

> select clear

> select #13/A:224

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

325 atoms, 328 bonds, 23 residues, 1 model selected  

> select up

1858 atoms, 1870 bonds, 117 residues, 1 model selected  

> hide #!1 models

> close
> #2-5,9-10,17,19,21-23,25,31#1,6-8,11-12,14-16,18,20,24,26-30,32#1.1,3-4,7,10#11.1-2#20.1#29.1-9

> select clear

> select Linker

295 atoms, 297 bonds, 20 residues, 1 model selected  

> select SHPPeptide

157 atoms, 157 bonds, 11 residues, 1 model selected  

> select ~sel

1701 atoms, 1713 bonds, 106 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/YASARA/p37_Shp.mol2"

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45.cxs" format session

Opened job7resampled.mrc as #1.1, grid size 320,320,320, pixel 1.1, shown at
step 1, values float32  
Opened job66_class001_filt4p5.mrc as #1.3, grid size 320,320,320, pixel 1.1,
shown at step 1, values float32  
Opened job83_run_class001filt4p5.mrc as #1.4, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job96_class001_filt4p5.mrc as #1.7, grid size 320,320,320, pixel 1.1,
shown at level 0.00363, step 1, values float32  
Opened job125_E_class001.mrc as #1.10, grid size 320,320,320, pixel 1.1, shown
at level 0.00241, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #6.1, grid size 320,320,320, pixel 1.1,
shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #6.2, grid size 320,320,320, pixel 1.1,
shown at level 0.0032, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #11.1, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #11.2, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #12, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 gaussian as #14, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #18.1, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #20.1, grid size 320,320,320, pixel
1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #24.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #26.1, grid size 320,320,320, pixel
1.1, shown at level 0.002, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #27.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #27.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #29.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #29.2, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #29.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 3 as #29.4, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 4 as #29.5, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 5 as #29.6, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 6 as #29.7, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 7 as #29.8, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 8 as #29.9, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #30, grid size 320,320,320,
pixel 1.1, shown at level 0.0024, step 1, values float32  

registering illegal selector name "active site"  

registering illegal selector name "SHP binding"  

registering illegal selector name "old_SDS22_withClash"  

registering illegal selector name "SHPP-Binding_C"  

opened ChimeraX session  

> select #13/A:215

22 atoms, 22 bonds, 1 residue, 1 model selected  

> select up

325 atoms, 328 bonds, 23 residues, 1 model selected  

> select up

1858 atoms, 1870 bonds, 117 residues, 1 model selected  

> close
> #2-5,9-10,17,19,21-23,25,31#1,6-8,11-12,14-16,18,20,24,26-30,32#1.1,3-4,7,10#11.1-2#20.1#29.1-9

> show sel cartoons

> select UBX

1406 atoms, 1414 bonds, 86 residues, 1 model selected  

> select ~sel

452 atoms, 456 bonds, 31 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/YASARA/p37_UBX.mol2"

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45.cxs" format session

Opened job7resampled.mrc as #1.1, grid size 320,320,320, pixel 1.1, shown at
step 1, values float32  
Opened job66_class001_filt4p5.mrc as #1.3, grid size 320,320,320, pixel 1.1,
shown at step 1, values float32  
Opened job83_run_class001filt4p5.mrc as #1.4, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job96_class001_filt4p5.mrc as #1.7, grid size 320,320,320, pixel 1.1,
shown at level 0.00363, step 1, values float32  
Opened job125_E_class001.mrc as #1.10, grid size 320,320,320, pixel 1.1, shown
at level 0.00241, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #6.1, grid size 320,320,320, pixel 1.1,
shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #6.2, grid size 320,320,320, pixel 1.1,
shown at level 0.0032, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #11.1, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #11.2, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #12, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 gaussian as #14, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #18.1, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #20.1, grid size 320,320,320, pixel
1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #24.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #26.1, grid size 320,320,320, pixel
1.1, shown at level 0.002, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #27.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #27.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #29.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #29.2, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #29.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 3 as #29.4, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 4 as #29.5, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 5 as #29.6, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 6 as #29.7, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 7 as #29.8, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 8 as #29.9, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #30, grid size 320,320,320,
pixel 1.1, shown at level 0.0024, step 1, values float32  

registering illegal selector name "active site"  

registering illegal selector name "SHP binding"  

registering illegal selector name "old_SDS22_withClash"  

registering illegal selector name "SHPP-Binding_C"  

opened ChimeraX session  

> hide #10 models

> hide #!14 models

> hide #!20.1 models

> select #11.2

3 models selected  

> hide #!11.2 models

> show #!12 models

> show #!14 models

> show #!15 models

> show #10 models

> select #10/G:6

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

118 atoms, 117 bonds, 22 residues, 1 model selected  

> close
> #2-5,9,13,17,19,21-23,25,31#1,6-8,11-12,14-16,18,20,24,26-30,32#1.1,3-4,7,10#11.1-2#20.1#29.1-9

> select ~sel

Nothing selected  

> delete atoms

> delete bonds

> undo

Undo failed, probably because structures have been modified.  

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45.cxs" format session

Opened job7resampled.mrc as #1.1, grid size 320,320,320, pixel 1.1, shown at
step 1, values float32  
Opened job66_class001_filt4p5.mrc as #1.3, grid size 320,320,320, pixel 1.1,
shown at step 1, values float32  
Opened job83_run_class001filt4p5.mrc as #1.4, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job96_class001_filt4p5.mrc as #1.7, grid size 320,320,320, pixel 1.1,
shown at level 0.00363, step 1, values float32  
Opened job125_E_class001.mrc as #1.10, grid size 320,320,320, pixel 1.1, shown
at level 0.00241, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #6.1, grid size 320,320,320, pixel 1.1,
shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #6.2, grid size 320,320,320, pixel 1.1,
shown at level 0.0032, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #11.1, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #11.2, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #12, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 gaussian as #14, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #18.1, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #20.1, grid size 320,320,320, pixel
1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #24.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #26.1, grid size 320,320,320, pixel
1.1, shown at level 0.002, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #27.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #27.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #29.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #29.2, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #29.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 3 as #29.4, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 4 as #29.5, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 5 as #29.6, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 6 as #29.7, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 7 as #29.8, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 8 as #29.9, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #30, grid size 320,320,320,
pixel 1.1, shown at level 0.0024, step 1, values float32  

registering illegal selector name "active site"  

registering illegal selector name "SHP binding"  

registering illegal selector name "old_SDS22_withClash"  

registering illegal selector name "SHPP-Binding_C"  

opened ChimeraX session  
 close session

> open C:/Users/sejovand/Downloads/emd_22678.map.gz

File reader requires uncompressed file;
'C:/Users/sejovand/Downloads/emd_22678.map.gz' is compressed  

> open C:/Users/sejovand/Downloads/s1740gtzpcB8

'C:/Users/sejovand/Downloads/s1740gtzpcB8' has no suffix  

> open C:/Users/sejovand/Downloads/s1740gtzpcB8.map

Opened s1740gtzpcB8.map as #1, grid size 256,256,256, pixel 1.55, shown at
level 0.316, step 1, values float32  

> close session

> open C:/Users/sejovand/Downloads/s173s7QDzLQC.map

Opened s173s7QDzLQC.map as #1, grid size 234,234,234, pixel 1.15, shown at
level 0.391, step 1, values float32  

> volume #1 level 0.1058

> volume #1 level 0.3314

> close session

> open C:/Users/sejovand/Downloads/s173QS9lfgwN.map

Opened s173QS9lfgwN.map as #1, grid size 200,200,200, pixel 1.35, shown at
level 0.563, step 1, values float32  

> volume #1 level 0.5209

> volume #1 level 0.3791

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45b.cxs" format session

No such file/path: Y:\van den Boom\Cryo-EM\2022-03-30 paper structure
p97-SPI\ChimeraX sessions\johannes_additionalDensity_45b.cxs  

> open "Y:\van den Boom\Cryo-EM\2022-03-30 paper structure p97-SPI\ChimeraX
> sessions\johannes_additionalDensity_45.cxs" format session

Opened job7resampled.mrc as #1.1, grid size 320,320,320, pixel 1.1, shown at
step 1, values float32  
Opened job66_class001_filt4p5.mrc as #1.3, grid size 320,320,320, pixel 1.1,
shown at step 1, values float32  
Opened job83_run_class001filt4p5.mrc as #1.4, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job96_class001_filt4p5.mrc as #1.7, grid size 320,320,320, pixel 1.1,
shown at level 0.00363, step 1, values float32  
Opened job125_E_class001.mrc as #1.10, grid size 320,320,320, pixel 1.1, shown
at level 0.00241, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #6.1, grid size 320,320,320, pixel 1.1,
shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #6.2, grid size 320,320,320, pixel 1.1,
shown at level 0.0032, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #11.1, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #11.2, grid size 320,320,320, pixel
1.1, shown at level 0.0034, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #12, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 gaussian as #14, grid size 320,320,320,
pixel 1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #18.1, grid size 320,320,320, pixel
1.1, shown at step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 0 as #20.1, grid size 320,320,320, pixel
1.1, shown at level 0.003, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #24.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #26.1, grid size 320,320,320, pixel
1.1, shown at level 0.002, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #27.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #27.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 as #29.1, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 1 as #29.2, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 2 as #29.3, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 3 as #29.4, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 4 as #29.5, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 5 as #29.6, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 6 as #29.7, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 7 as #29.8, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 8 as #29.9, grid size 320,320,320, pixel
1.1, shown at level 0.0024, step 1, values float32  
Opened job66_class001_filt4p5.mrc 0 gaussian as #30, grid size 320,320,320,
pixel 1.1, shown at level 0.0024, step 1, values float32  

registering illegal selector name "active site"  

registering illegal selector name "SHP binding"  

registering illegal selector name "old_SDS22_withClash"  

registering illegal selector name "SHPP-Binding_C"  

opened ChimeraX session  

> hide #!30 models

> select clear

> select #17/C:344

8 atoms, 7 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> color #9/B #f08080

> select clear

> select #9/B:147

11 atoms, 10 bonds, 1 residue, 1 model selected  

> color sel cyan

> undo

> select #9/B:148

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color sel cyan

> select #9/B:177

5 atoms, 4 bonds, 1 residue, 1 model selected  

> color sel cyan

> select clear

> select #9/B:50

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color sel medium blue

> color sel lime

> select clear

> select #9/B:109

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color sel lime

> color sel cyan

> select clear

> select #9/A:282

6 atoms, 5 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> show #!1.3 models

> select #9/B:54

4 atoms, 3 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> select #9/B:109

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel atoms

> select clear

> open "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure
> p97-SPI/Phenix/p97-SPI_minimized_Fcorrected_V3_polyA.pdb"

Chain information for p97-SPI_minimized_Fcorrected_V3_polyA.pdb #33  
---  
Chain | Description  
A F | No description available  
B C D E | No description available  
P | No description available  
S | No description available  
X | No description available  
Y | No description available  
  

> select #33

25659 atoms, 25627 bonds, 5198 residues, 1 model selected  

> hide sel atoms

> show sel cartoons

> ui tool show Matchmaker

> select clear

> select #33/C:709

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

144 atoms, 143 bonds, 29 residues, 1 model selected  

> select up

3715 atoms, 3714 bonds, 753 residues, 1 model selected  

> select #9/B:40

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

28 atoms, 27 bonds, 4 residues, 1 model selected  

> select up

5913 atoms, 6011 bonds, 753 residues, 1 model selected  

> matchmaker #33 to #9 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker job66fullsinglemodel_noHETATMfixed.pdb, chain B (#9) with
p97-SPI_minimized_Fcorrected_V3_polyA.pdb, chain B (#33), sequence alignment
score = 3723.3  
RMSD between 750 pruned atom pairs is 0.556 angstroms; (across all 753 pairs:
0.577)  
  

> select clear

> hide #!1.3 models

> show #!1.3 models

> hide #9 models

> hide #17 models

> hide #!20.1 models

> hide #!14 models

> hide #10 models

> hide #13 models

> color #33/A #ffffb2

> color #33/B #f08080

> color #33/C #8fbc8f

> color #33/D #deb887

> color #33/E #ff7f50

> color #33/F #b2ffff

> color #33/I #be01be

> color #33/P #228b22

> color #33/S #ff0000

> show #31 models

> select #31/A:197

8 atoms, 7 bonds, 1 residue, 1 model selected  

> hide #31 models

> show #23 models

> hide #23 models

> show #13 models

> select #13/A:225

19 atoms, 18 bonds, 1 residue, 1 model selected  

> ui tool show "Selection Inspector"

> hide #13 models

> color #33/X-Z #0044ff

> select clear

> select #33/X:224

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

52 atoms, 51 bonds, 11 residues, 1 model selected  

> hide sel cartoons

> select clear

> select #33/B:50

5 atoms, 4 bonds, 1 residue, 1 model selected  

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/johannes_additionalDensity_46.cxs"

> color sel black

> select clear

> ui tool show "Side View"

> view name FigS3C

> select #33/S:341

5 atoms, 4 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> turn y -90

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Amber_side.png" width 1341 height 964 supersample 3

> turn y 90

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Amber_front.png" width 1341 height 964 supersample 3

> view name FigS3C

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Amber_front.png" width 1341 height 964 supersample 3

> turn y -90

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Amber_side.png" width 1341 height 964 supersample 3

"Select chain" href="cxcmd:select #34/E:21-773">E No description available | P
| No description available  
S | No description available  
X | No description available  
Y | No description available  
  

> ui tool show Matchmaker

> matchmaker #33 to #34

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker D1+D2_individually_realspaced.pdb, chain B (#34) with
p97-p37-SPI_B_EM_polyA.pdb, chain B (#33), sequence alignment score = 3872.1  
RMSD between 753 pruned atom pairs is 0.001 angstroms; (across all 753 pairs:
0.001)  
  

> select #34/A

3662 atoms, 3661 bonds, 742 residues, 1 model selected  

> matchmaker #33 to #34 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker D1+D2_individually_realspaced.pdb, chain A (#34) with
p97-p37-SPI_B_EM_polyA.pdb, chain A (#33), sequence alignment score = 3760.1  
RMSD between 742 pruned atom pairs is 0.001 angstroms; (across all 742 pairs:
0.001)  
  

> show #33 models

> hide #33 models

> show #33 models

> hide #34 models

> undo

> select clear

> select #9/A

5820 atoms, 5915 bonds, 742 residues, 1 model selected  

> matchmaker #33-34 to #9 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker job66fullsinglemodel_noHETATMfixed.pdb, chain A (#9) with
p97-p37-SPI_B_EM_polyA.pdb, chain A (#33), sequence alignment score = 3671.9  
RMSD between 740 pruned atom pairs is 0.625 angstroms; (across all 742 pairs:
0.639)  
  
Matchmaker job66fullsinglemodel_noHETATMfixed.pdb, chain A (#9) with
D1+D2_individually_realspaced.pdb, chain A (#34), sequence alignment score =
3671.9  
RMSD between 740 pruned atom pairs is 0.625 angstroms; (across all 742 pairs:
0.639)  
  

> select #34

25659 atoms, 25627 bonds, 5198 residues, 1 model selected  

> show sel cartoons

> hide sel atoms

> select clear

> hide #34 models

> show #34 models

> hide #34 models

> show #34 models

> volume #1.3 level 0.005064

> volume #1.3 level 0.00887

> hide #34 models

> select #9/F:201

7 atoms, 6 bonds, 1 residue, 1 model selected  

> open "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure
> p97-SPI/Phenix/p97-SPI_minimized_Fcorrected_polyA.pdb"

Chain information for p97-SPI_minimized_Fcorrected_polyA.pdb #35  
---  
Chain | Description  
A F | No description available  
B C D E | No description available  
P | No description available  
S | No description available  
X | No description available  
Y | No description available  
  

> ui tool show Matchmaker

> select #9/A

5820 atoms, 5915 bonds, 742 residues, 1 model selected  

> matchmaker #35 to #9 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker job66fullsinglemodel_noHETATMfixed.pdb, chain A (#9) with
p97-SPI_minimized_Fcorrected_polyA.pdb, chain A (#35), sequence alignment
score = 3671.9  
RMSD between 740 pruned atom pairs is 0.625 angstroms; (across all 742 pairs:
0.639)  
  

> matchmaker #35 to #9 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker job66fullsinglemodel_noHETATMfixed.pdb, chain A (#9) with
p97-SPI_minimized_Fcorrected_polyA.pdb, chain A (#35), sequence alignment
score = 3671.9  
RMSD between 740 pruned atom pairs is 0.625 angstroms; (across all 742 pairs:
0.639)  
  

> select #35

25659 atoms, 25627 bonds, 5198 residues, 1 model selected  

> show sel cartoons

> hide sel atoms

> select clear

> color #35 #ef0004 transparency 0

> select #35/F:504

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

20 atoms, 19 bonds, 4 residues, 1 model selected  

> select up

3662 atoms, 3661 bonds, 742 residues, 1 model selected  

> color sel blue

> select clear

> volume #1.3 level 0.006206

> select #35/F:272

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

19 atoms, 18 bonds, 4 residues, 1 model selected  

> select up

3662 atoms, 3661 bonds, 742 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 3662 atom styles  

> select clear

> select #35/F:393

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #35/F:357

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #35/F:344

5 atoms, 4 bonds, 1 residue, 1 model selected  

> cofr sel

> select #35/F:336@CA

1 atom, 1 residue, 1 model selected  

> cofr sel

> select #9/F:336

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel atoms

> close #35

> open "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure
> p97-SPI/Phenix/p97-SPI_minimized_Fcorrected_V3_polyA.pdb"

Chain information for p97-SPI_minimized_Fcorrected_V3_polyA.pdb #35  
---  
Chain | Description  
A F | No description available  
B C D E | No description available  
P | No description available  
S | No description available  
X | No description available  
Y | No description available  
  

> select #35

25659 atoms, 25627 bonds, 5198 residues, 1 model selected  

> show sel cartoons

> style sel stick

Changed 25659 atom styles  

> hide sel atoms

> select clear

> ui tool show Matchmaker

> select #35

25659 atoms, 25627 bonds, 5198 residues, 1 model selected  

> ~select #35

Nothing selected  

> select #9/B:132

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

94 atoms, 98 bonds, 10 residues, 1 model selected  

> select up

5913 atoms, 6011 bonds, 753 residues, 1 model selected  

> matchmaker #35 to #9 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker job66fullsinglemodel_noHETATMfixed.pdb, chain B (#9) with
p97-SPI_minimized_Fcorrected_V3_polyA.pdb, chain B (#35), sequence alignment
score = 3723.3  
RMSD between 750 pruned atom pairs is 0.556 angstroms; (across all 753 pairs:
0.577)  
  

> select clear

> hide #35 models

> show #35 models

> select #9/A:367

7 atoms, 6 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> volume #1.3 level 0.008807

> select #35/A:362

5 atoms, 4 bonds, 1 residue, 1 model selected  

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> select #9/C:367

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show #!1.3 models

> cofr sel

> volume #1.3 level 0.007348

> color zone #1.3 near #9 distance 5

> volume #1.3 transparency 0.8 change surface

> volume #1.3 transparency 0.3 change surface

> hide #9 models

> hide #35 models

> volume #1.3 transparency 0 change surface

> volume #1.3 level 0.005699

> color zone #1.3 near #9 distance 5

> volume #1.3 transparency 0.3 change surface

> show #9 models

> open "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure
> p97-SPI/Phenix/0-p97-fit_3-coot-refined_subunitF3_V3.pdb"

Chain information for 0-p97-fit_3-coot-refined_subunitF3_V3.pdb #36  
---  
Chain | Description  
A F | No description available  
B C D E | No description available  
P | No description available  
S | No description available  
X | No description available  
Y | No description available  
  

> ui tool show Matchmaker

> hide #36 models

> select #9/B:96

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

64 atoms, 63 bonds, 8 residues, 1 model selected  

> select up

5913 atoms, 6011 bonds, 753 residues, 1 model selected  

> matchmaker #36 to #9 & sel

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker job66fullsinglemodel_noHETATMfixed.pdb, chain B (#9) with
0-p97-fit_3-coot-refined_subunitF3_V3.pdb, chain B (#36), sequence alignment
score = 3738.3  
RMSD between 750 pruned atom pairs is 0.556 angstroms; (across all 753 pairs:
0.577)  
  

> show #36 models

> select #36

82241 atoms, 82616 bonds, 5198 residues, 1 model selected  

> show sel cartoons

> style sel stick

Changed 82241 atom styles  

> hide sel atoms

> hide #9 models

> hide #36 models

> show #36 models

> hide #36 models

> show #36 models

> hide #17 models

> select #36/S:316

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select clear

> select #36/S:316

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select up

117 atoms, 116 bonds, 8 residues, 1 model selected  

> select up

4760 atoms, 4782 bonds, 285 residues, 1 model selected  

> color sel forest green

> select #36/P:40

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select up

273 atoms, 273 bonds, 16 residues, 1 model selected  

> select up

4756 atoms, 4810 bonds, 298 residues, 1 model selected  

> color sel red

> select clear

> select #36/S:321

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select up

79 atoms, 78 bonds, 5 residues, 1 model selected  

> select up

4760 atoms, 4782 bonds, 285 residues, 1 model selected  

> color sel red

> select #36/P:40

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select up

273 atoms, 273 bonds, 16 residues, 1 model selected  

> select up

4756 atoms, 4810 bonds, 298 residues, 1 model selected  

> color sel forest green

> select clear

> color #36/A #ffffb2

> color #36/B #f08080

> color #36/C #8fbc8f

> color #36/D #deb887

> color #36/E #ff7f50

> color #36/F #b2ffff

> color #36/I #be01be

> color #36/X 94,50,50

> select #13/A:225

19 atoms, 18 bonds, 1 residue, 1 model selected  

> ui tool show "Selection Inspector"

> color #36/X 68,255,128

> select clear

> color #36/X 0,68,255

> color #36/X 0,68,255,128

> color #36/X #0044ff

> color #36/Y #0044ff

> select clear

> hide #13 models

> select #36/S:342

22 atoms, 21 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> hide #!1.3 models

> select #36/S:345

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 170 bonds, 9 residues, 1 model selected  

> select zone selection 4 #36/B

Missing or invalid "near" argument: invalid objects specifier  

> select zone 4 #36/B

Missing or invalid "near" argument: invalid objects specifier  

> select zone near 4 #36/B

Missing or invalid "near" argument: invalid objects specifier  

> select zone #36/B 4

Selected 35638 atoms, 3 surfaces  

> show sel & #36 atoms

> hide sel & #36 atoms

> select clear

> select #36/S:343

16 atoms, 15 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 170 bonds, 9 residues, 1 model selected  

> select zone #36/B 4

Selected 35638 atoms, 3 surfaces  

> show sel & #36 atoms

> hide sel & #36 atoms

> select clear

> select #36/S:343

16 atoms, 15 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 170 bonds, 9 residues, 1 model selected  

> name frozen SDS22Helix sel

> select zone SDS22Helix 4 #36/A

Nothing selected  

> select zone SDS22Helix 4 #36/B

Selected 113 atoms  

> show sel atoms

> select up

270 atoms, 266 bonds, 17 residues, 1 model selected  

> show sel atoms

> select clear

> select #36/S:344

17 atoms, 16 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 170 bonds, 9 residues, 1 model selected  

> show sel atoms

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

21 atoms, 21 bonds, 1 residue, 1 model selected  

> color sel black

> select clear

> select #36/B:53@CG

1 atom, 1 residue, 1 model selected  

> select clear

> select #36/B:54

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel atoms

> color sel black

> select clear

> select #36/B:141

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select clear

> select #36/S:339

21 atoms, 21 bonds, 1 residue, 1 model selected  

> select add #36/S:340

45 atoms, 44 bonds, 2 residues, 1 model selected  

> select add #36/S:341

69 atoms, 67 bonds, 3 residues, 1 model selected  

> select up

71 atoms, 70 bonds, 4 residues, 1 model selected  

> color sel orange red

> color sel purple

> select clear

> select #36/Y:305

14 atoms, 14 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> select #36/C:54

7 atoms, 6 bonds, 1 residue, 1 model selected  

> color sel black

> select clear

> select #36/C:143

21 atoms, 21 bonds, 1 residue, 1 model selected  

> color sel black

> select clear

> select #36/C:143

21 atoms, 21 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #36/C:54

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #36/Y:304

20 atoms, 20 bonds, 1 residue, 1 model selected  

> select clear

> select #36/Y:306

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #36/Y:305

14 atoms, 14 bonds, 1 residue, 1 model selected  

> show sel atoms

> hide sel atoms

> select clear

> select #36/S:344

17 atoms, 16 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 170 bonds, 9 residues, 1 model selected  

> select up

4760 atoms, 4782 bonds, 285 residues, 1 model selected  

> select down

170 atoms, 170 bonds, 9 residues, 1 model selected  

> hide sel atoms

> select clear

> select #36/S:345

19 atoms, 18 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> select #36/B:142

10 atoms, 9 bonds, 1 residue, 1 model selected  

> select up

89 atoms, 89 bonds, 5 residues, 1 model selected  

> select up

11878 atoms, 11976 bonds, 753 residues, 1 model selected  

> hide sel atoms

> select clear

> ui tool show "Side View"

> select #36/Y:305

14 atoms, 14 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> hide sel atoms

> select up

14 atoms, 13 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select #36/C:143

21 atoms, 21 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select clear

> clip off

> show #!1.3 models

> hide #36 models

> show #9 models

> show #17 models

> hide #!1.3 models

> select #9/B:137

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

94 atoms, 98 bonds, 10 residues, 1 model selected  

> select up

5913 atoms, 6011 bonds, 753 residues, 1 model selected  

> color #9/B #f08080

> select clear

> hide #!11.2 models

> show #!11.2 models

> hide #!11.2 models

> hide #!14 models

> hide #!20.1 models

> select clear

> select #17/C:340

11 atoms, 10 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> select #9/B:54

4 atoms, 3 bonds, 1 residue, 1 model selected  

> color sel black

> select clear

> select #9/B:143

12 atoms, 12 bonds, 1 residue, 1 model selected  

> color sel black

> select clear

> view name SDS22 front

Expected fewer arguments  

> view name SDS22front

> turn y 90

> view SDS22front

> turn y -90

> show #36 models

> hide #9 models

> hide #17 models

> select #36/S:340

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 170 bonds, 9 residues, 1 model selected  

> select up

4760 atoms, 4782 bonds, 285 residues, 1 model selected  

> color sel red

> select clear

> turn y 90

> view name SDS22front

> turn y -90

> turn y 90

> view name SDS22front

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Mutants_front.png" width 1341 height 964 supersample 3

> turn y -90

> select clear

> select #36/X:218

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select up

158 atoms, 158 bonds, 11 residues, 1 model selected  

> select up

82241 atoms, 82616 bonds, 5198 residues, 1 model selected  

> select down

158 atoms, 158 bonds, 11 residues, 1 model selected  

> hide sel cartoons

> select clear

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Mutants_side.png" width 1341 height 964 supersample 3

> turn y 90

> turn y -90

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Mutants_front.png" width 1341 height 964 supersample 3

> turn y 90

> save "Y:/van den Boom/Cryo-EM/2022-03-30 paper structure p97-SPI/ChimeraX
> sessions/p97Mutants_front.png" width 1341 height 964 supersample 3

> clip off

> show #!1.3 models

> select #36/F:269

19 atoms, 18 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> select #36/F:277

22 atoms, 17 bonds, 1 residue, 1 model selected  

> select up

79 atoms, 70 bonds, 5 residues, 1 model selected  

> select up

11700 atoms, 11526 bonds, 742 residues, 1 model selected  

> color sel black

> color sel dim gray

> select clear

> select #36/E:113

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select up

451 atoms, 455 bonds, 27 residues, 1 model selected  

> select up

11878 atoms, 11976 bonds, 753 residues, 1 model selected  

> hide sel cartoons

> select clear

> volume #1.3 level 0.005128

> select clear

> select #36/F:273

15 atoms, 12 bonds, 1 residue, 1 model selected  

> cofr sel

> select clear

> color zone #1.3 near (#9/A-F | #17) distance 5

> transparency #1.3.1 0

> transparency #1.3.1 50


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 452.57
OpenGL renderer: GRID T4-2Q/PCI/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: VMware, Inc.
Model: VMware7,1
OS: Microsoft Windows 10 Enterprise (Build 19042)
Memory: 34,358,669,312
MaxProcessMemory: 137,438,953,344
CPU: 6 Intel(R) Xeon(R) Gold 6154 CPU @ 3.00GHz
OSLanguage: de-DE
Locale: ('de_DE', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Cc:	Tom Goddard added
Component:	Unassigned → Platform
Description:	modified (diff)
Owner:	set to Eric Pettersen
Platform:	→ all
Project:	→ ChimeraX
Status:	new → accepted
Summary:	ChimeraX bug report submission → Crash using File→Open on Windows

comment:2 by Eric Pettersen, 3 years ago

Resolution:	→ can't reproduce
Status:	accepted → closed

1.3

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