Context Navigation

← Previous Ticket
Next Ticket →

#7117 closed defect (fixed)

Didn't find section 'Main' in tab 'ISOLDE'

Reported by:	joel.mackay@…	Owned by:	Tristan Croll
Priority:	normal	Milestone:
Component:	Third Party	Version:
Keywords:		Cc:	Greg Couch
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Messages  
---  
notes | available bundle cache has not been initialized yet  
Updating list of available bundles failed: [WinError 10060] A connection
attempt failed because the connected party did not properly respond after a
period of time, or established connection failed because connected host has
failed to respond  
  
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

>
> installC:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl

Unknown command: devel
installC:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl  

> devel install
> C:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl

Bundle info file
'C:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl\\\bundle_info.xml'
is missing  

> {C:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl}

Missing or invalid "path" argument: File
'{C:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl}'
does not exist  

> devel install
> C:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl

Bundle info file
'C:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl\\\bundle_info.xml'
is missing  

> toolshed install
> C:/Users/joel/Downloads/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl

Errors may have occurred when running pip:  

pip standard error:  
\---  
WARNING: Value for scheme.platlib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\1.4\site-packages  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.purelib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\1.4\site-packages  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils:
C:\Users\joel\AppData\Local\UCSF\ChimeraX\Python39\Include\ChimeraX-Clipper  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\Include\ChimeraX-
Clipper  
WARNING: Value for scheme.scripts does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\Python39\Scripts  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\Scripts  
WARNING: Value for scheme.data does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX  
sysconfig: C:\Users\joel\AppData\Roaming\Python  
WARNING: Additional context:  
user = True  
home = None  
root = None  
prefix = None  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\Python39\Include\UNKNOWN  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\Include\UNKNOWN  
WARNING: You are using pip version 21.3.1; however, version 22.1.2 is
available.  
You should consider upgrading via the 'C:\Program Files\ChimeraX
1.4\bin\ChimeraX.exe -m pip install --upgrade pip' command.  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing
c:\users\joel\downloads\chimerax_clipper-0.18.0-cp39-cp39-win_amd64.whl  
Requirement already satisfied: ChimeraX-Arrays~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-Clipper==0.18.0) (1.0)  
Requirement already satisfied: ChimeraX-Atomic~=1.36 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-Clipper==0.18.0)
(1.39.1)  
Requirement already satisfied: ChimeraX-Core~=1.4.dev202203030220 in
c:\program files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Clipper==0.18.0) (1.4)  
Requirement already satisfied: ChimeraX-AtomicLibrary~=7.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-Clipper==0.18.0) (7.0)  
Requirement already satisfied: ChimeraX-Nucleotides~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (2.0.2)  
Requirement already satisfied: ChimeraX-Graphics~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.1)  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.2)  
Requirement already satisfied: ChimeraX-mmCIF~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (2.7)  
Requirement already satisfied: ChimeraX-PDBLibrary~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.0.2)  
Requirement already satisfied: ChimeraX-PDB~=2.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-Atomic~=1.36->ChimeraX-
Clipper==0.18.0) (2.6.6)  
Requirement already satisfied: ChimeraX-ConnectStructure~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (2.0.1)  
Requirement already satisfied: ChimeraX-DataFormats~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-mmCIF~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.2.2)  
Requirement already satisfied: ChimeraX-OpenCommand~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-mmCIF~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.9)  
Requirement already satisfied: ChimeraX-SaveCommand~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-mmCIF~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.5.1)  
Requirement already satisfied: ChimeraX-UI~=1.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.18.3)  
Requirement already satisfied: ChimeraX-Surface~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.0)  
Requirement already satisfied: ChimeraX-IO~=1.0.1 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-PDB~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.0.1)  
Requirement already satisfied: ChimeraX-MapData~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper==0.18.0) (2.0)  
Requirement already satisfied: ChimeraX-StdCommands~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper==0.18.0) (1.8)  
Requirement already satisfied: ChimeraX-Map~=1.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-Surface~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.1)  
Requirement already satisfied: ChimeraX-MouseModes~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-UI~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.1)  
Requirement already satisfied: ChimeraX-SelInspector~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-UI~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.0)  
Requirement already satisfied: ChimeraX-MapSeries~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-Map~=1.0->ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper==0.18.0) (2.1)  
Requirement already satisfied: ChimeraX-MapFilter~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-Map~=1.0->ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper==0.18.0) (2.0)  
Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
SelInspector~=1.0->ChimeraX-UI~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (1.0)  
Requirement already satisfied: ChimeraX-Dssp~=2.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-StdCommands~=1.0->ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
Clipper==0.18.0) (2.0)  
Requirement already satisfied: ChimeraX-MapFit~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
StdCommands~=1.0->ChimeraX-Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-Clipper==0.18.0) (2.0)  
Installing collected packages: ChimeraX-Clipper  
Successfully installed ChimeraX-Clipper-0.18.0  
\---  

Successfully installed ChimeraX-Clipper-0.18.0  
Installed ChimeraX-Clipper (0.18.0)  

> toolshed install
> C:/Users/joel/Downloads/ChimeraX_ISOLDE-1.4b1-cp39-cp39-win_amd64.whl

Errors may have occurred when running pip:  

pip standard error:  
\---  
WARNING: Value for scheme.platlib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\1.4\site-packages  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.purelib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\1.4\site-packages  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\site-packages  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils:
C:\Users\joel\AppData\Local\UCSF\ChimeraX\Python39\Include\ChimeraX-ISOLDE  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\Include\ChimeraX-
ISOLDE  
WARNING: Value for scheme.scripts does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\Python39\Scripts  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\Scripts  
WARNING: Value for scheme.data does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX  
sysconfig: C:\Users\joel\AppData\Roaming\Python  
WARNING: Additional context:  
user = True  
home = None  
root = None  
prefix = None  
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>  
distutils: C:\Users\joel\AppData\Local\UCSF\ChimeraX\Python39\Include\UNKNOWN  
sysconfig: C:\Users\joel\AppData\Roaming\Python\Python39\Include\UNKNOWN  
WARNING: You are using pip version 21.3.1; however, version 22.1.2 is
available.  
You should consider upgrading via the 'C:\Program Files\ChimeraX
1.4\bin\ChimeraX.exe -m pip install --upgrade pip' command.  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing
c:\users\joel\downloads\chimerax_isolde-1.4b1-cp39-cp39-win_amd64.whl  
Requirement already satisfied: ChimeraX-Core~=1.4.dev202203030220 in
c:\program files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
ISOLDE==1.4b1) (1.4)  
Requirement already satisfied: ChimeraX-Clipper~=0.18.0 in
c:\users\joel\appdata\local\ucsf\chimerax\1.4\site-packages (from ChimeraX-
ISOLDE==1.4b1) (0.18.0)  
Requirement already satisfied: ChimeraX-AtomicLibrary~=7.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-ISOLDE==1.4b1) (7.0)  
Requirement already satisfied: ChimeraX-Atomic~=1.36 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-ISOLDE==1.4b1)
(1.39.1)  
Requirement already satisfied: ChimeraX-Arrays~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-ISOLDE==1.4b1) (1.0)  
Requirement already satisfied: ChimeraX-PDBLibrary~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.0.2)  
Requirement already satisfied: ChimeraX-mmCIF~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (2.7)  
Requirement already satisfied: ChimeraX-Geometry~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.2)  
Requirement already satisfied: ChimeraX-ConnectStructure~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (2.0.1)  
Requirement already satisfied: ChimeraX-Graphics~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.1)  
Requirement already satisfied: ChimeraX-Nucleotides~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (2.0.2)  
Requirement already satisfied: ChimeraX-PDB~=2.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-Atomic~=1.36->ChimeraX-ISOLDE==1.4b1)
(2.6.6)  
Requirement already satisfied: ChimeraX-SaveCommand~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-mmCIF~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.5.1)  
Requirement already satisfied: ChimeraX-OpenCommand~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-mmCIF~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.9)  
Requirement already satisfied: ChimeraX-DataFormats~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-mmCIF~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.2.2)  
Requirement already satisfied: ChimeraX-Surface~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.0)  
Requirement already satisfied: ChimeraX-UI~=1.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.18.3)  
Requirement already satisfied: ChimeraX-IO~=1.0.1 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-PDB~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.0.1)  
Requirement already satisfied: ChimeraX-StdCommands~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
ISOLDE==1.4b1) (1.8)  
Requirement already satisfied: ChimeraX-Map~=1.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-Surface~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.1)  
Requirement already satisfied: ChimeraX-MapData~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
ISOLDE==1.4b1) (2.0)  
Requirement already satisfied: ChimeraX-SelInspector~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-UI~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.0)  
Requirement already satisfied: ChimeraX-MouseModes~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-UI~=1.0->ChimeraX-
Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.1)  
Requirement already satisfied: ChimeraX-MapSeries~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-Map~=1.0->ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
ISOLDE==1.4b1) (2.1)  
Requirement already satisfied: ChimeraX-MapFilter~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-Map~=1.0->ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
ISOLDE==1.4b1) (2.0)  
Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
SelInspector~=1.0->ChimeraX-UI~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (1.0)  
Requirement already satisfied: ChimeraX-Dssp~=2.0 in c:\program files\chimerax
1.4\bin\lib\site-packages (from ChimeraX-StdCommands~=1.0->ChimeraX-
Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-Atomic~=1.36->ChimeraX-
ISOLDE==1.4b1) (2.0)  
Requirement already satisfied: ChimeraX-MapFit~=2.0 in c:\program
files\chimerax 1.4\bin\lib\site-packages (from ChimeraX-
StdCommands~=1.0->ChimeraX-Surface~=1.0->ChimeraX-Nucleotides~=2.0->ChimeraX-
Atomic~=1.36->ChimeraX-ISOLDE==1.4b1) (2.0)  
Installing collected packages: ChimeraX-ISOLDE  
Successfully installed ChimeraX-ISOLDE-1.4b1  
\---  

Successfully installed ChimeraX-ISOLDE-1.4b1  
Installed ChimeraX-ISOLDE (1.4b1)  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\1.4\site-
packages\chimerax\isolde\toolbar.py", line 127, in _set_button_starting_states  
self.set_enabled(key, True)  
File "C:\Users\joel\AppData\Local\UCSF\ChimeraX\1.4\site-
packages\chimerax\isolde\toolbar.py", line 113, in set_enabled  
self.session.toolbar.set_enabled(enabled, tab, section, display_name)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\toolbar\manager.py", line 164, in set_enabled  
tb.set_enabled(enabled, tab_title, section_title, button_title)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\toolbar\tool.py", line 246, in set_enabled  
self.ttb.set_enabled(enabled, tab_title, section_title, button_title)  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\tabbedtoolbar.py", line 496, in set_enabled  
raise ValueError(f"Didn't find section '{section_title}' in tab
'{tab_title}'")  
ValueError: Didn't find section 'Main' in tab 'ISOLDE'  
  
Error processing trigger "new frame":  
ValueError: Didn't find section 'Main' in tab 'ISOLDE'  
  
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\ui\widgets\tabbedtoolbar.py", line 496, in set_enabled  
raise ValueError(f"Didn't find section '{section_title}' in tab
'{tab_title}'")  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 1080/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_AU.cp1252
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: windows

Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Enterprise (Build 19044)
Memory: 17,122,676,736
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700 CPU @ 3.60GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2022.5.18.1
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.18.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.4b1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pywin32: 303
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 3 years ago

Cc:	Greg Couch added
Component:	Unassigned → Third Party
Owner:	set to Tristan Croll
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Didn't find section 'Main' in tab 'ISOLDE'

comment:2 by Tristan Croll, 3 years ago

Resolution:	→ fixed
Status:	assigned → closed

Thanks for the report. This happens on the very first install (via the GUI) of ISOLDE 1.4b1 in ChimeraX 1.4, due to the ribbon menu not being updated on bundle install. Ticket #7090 is about fixing that for the next ChimeraX release; meanwhile, I've added some code to catch the error and notify the user that they'll need to restart ChimeraX before using ISOLDE.

Note: See TracTickets for help on using tickets.

Download in other formats: