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Opened 3 years ago
Closed 3 years ago
#7185 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010eThread 0x00000fac (most recent call first):
Windows fatal exception: code 0x
8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0x
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e
8001010eWindows fatal exception:
code 0x8001010e8001010e
File Windows fatal exception: "C:Windows fatal exception: \code 0xPcode 0x8001010e8001010e
Windows fatal exception: Windows fatal exception: 8001010ecode 0xro
gcode 0xr
aWindows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010e
8001010eWindows fatal exception:
Windows fatal exception: mcode 0x 8001010eF
iWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
8001010eWindows fatal exception: Windows fatal exception:
code 0xlcode 0x8001010e8001010e
Windows fatal exception: code 0xWindows fatal exception: code 0xcode 0xes8001010e
8001010e
Windows fatal exception: 8001010eWindows fatal exception:
code 0xcode 0x\8001010e8001010eC
hWindows fatal exception: icode 0x
8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010eWindows fatal exception: code 0xWindows fatal exception: 8001010ecode 0x
8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0xme
r
aWindows fatal exception: Windows fatal exception: 8001010ecode 0x
XWindows fatal exception: code 0x8001010e8001010e
8001010eWindows fatal exception: 1code 0x.
3Windows fatal exception: \code 0xb8001010ei
8001010enWindows fatal exception:
code 0xWindows fatal exception: 8001010eWindows fatal exception: code 0xcode 0x8001010e\8001010elcode 0x
i8001010eb
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e
8001010e\
sWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
iWindows fatal exception: tcode 0xe8001010e-
packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\Windows fatal exception: lcode 0xi8001010eb
\Windows fatal exception: scode 0xi8001010et
eWindows fatal exception: -code 0xp8001010eWindows fatal exception:
acode 0xc8001010eWindows fatal exception: k
code 0xaWindows fatal exception: gcode 0x8001010e8001010e
Windows fatal exception: ecode 0xWindows fatal exception: scode 0x\8001010eC8001010eh
imWindows fatal exception: Windows fatal exception: code 0xe8001010e
rcode 0xa8001010eXWindows fatal exception:
_code 0x
8001010eWindows fatal exception:
code 0x8001010eWindows fatal exception:
mcode 0xWindows fatal exception: 8001010ecode 0xa8001010e
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010ei8001010en
.
p
y"Windows fatal exception: Windows fatal exception: Windows fatal exception: , line code 0xcode 0x8001010e8001010ecode 0x
867Windows fatal exception: in 8001010ei
ncode 0xiWindows fatal exception: 8001010etcode 0x
8001010e
File Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
"C
Windows fatal exception: Windows fatal exception: code 0x:code 0x8001010e8001010e
\
PWindows fatal exception: rcode 0xoWindows fatal exception: gcode 0xr8001010ea
Windows fatal exception: 8001010ecode 0x
Windows fatal exception: 8001010ecode 0xm
Windows fatal exception: 8001010e
code 0xWindows fatal exception: 8001010ecode 0x
8001010e
Windows fatal exception: Windows fatal exception: Fcode 0xcode 0x8001010e8001010e
iWindows fatal exception:
code 0x8001010el
eWindows fatal exception: scode 0x\8001010eC
hWindows fatal exception: icode 0xm8001010eWindows fatal exception:
code 0xeWindows fatal exception: rcode 0xa8001010eX
Windows fatal exception: code 0x8001010e8001010e
Windows fatal exception:
1Windows fatal exception: Windows fatal exception: code 0xcode 0x.8001010e38001010e
Windows fatal exception: code 0xWindows fatal exception: \code 0xb8001010eicode 0xn8001010e\
Windows fatal exception: Windows fatal exception: code 0x8001010e8001010e
Windows fatal exception: lWindows fatal exception: icode 0xcode 0x8001010e8001010e
b\code 0xWindows fatal exception:
8001010ecode 0xWindows fatal exception: 8001010ecode 0x
Windows fatal exception: code 0x8001010e8001010eWindows fatal exception:
code 0xWindows fatal exception: s8001010ei
code 0xtWindows fatal exception: ecode 0x-8001010e
Windows fatal exception: code 0x8001010eWindows fatal exception: pcode 0xa8001010e
c
kWindows fatal exception: 8001010eaWindows fatal exception: gcode 0xcode 0x8001010e8001010e
Windows fatal exception: code 0x
8001010ee
sWindows fatal exception: \Windows fatal exception: code 0xcode 0x8001010e8001010eC
h
iWindows fatal exception: Windows fatal exception: mcode 0xcode 0x8001010ee
r8001010ea
XWindows fatal exception: _code 0xm8001010ea
in.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00000fac (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line Windows fatal exception: 135code 0x in sh8001010eo
wWindows fatal exception: _code 0xo8001010ep
eWindows fatal exception: ncode 0x_8001010ef
iWindows fatal exception: lcode 0xe8001010e_
dWindows fatal exception: icode 0xa8001010el
oWindows fatal exception: gcode 0x
8001010e File
"Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0x8001010eC
himeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.pWindows fatal exception: ycode 0x"8001010e, line
867 in Windows fatal exception: icode 0xn8001010ei
tWindows fatal exception:
code 0x File 8001010e"C
:\PWindows fatal exception: rcode 0xo8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \Ccode 0xh8001010ei
mWindows fatal exception: ecode 0xr8001010ea
XWindows fatal exception: code 0x18001010e.
3\bWindows fatal exception: icode 0xn8001010e\
lWindows fatal exception: icode 0xb8001010e\
site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00000fac (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimWindows fatal exception: ecode 0xr8001010ea
X_Windows fatal exception: mcode 0xa8001010ei
nWindows fatal exception: .code 0xp8001010ey
"Windows fatal exception: , line code 0x8678001010e in
iWindows fatal exception: ncode 0xi8001010et
Windows fatal exception: File code 0x"8001010eC
:Windows fatal exception: \code 0xP8001010er
oWindows fatal exception: gcode 0xr8001010ea
mWindows fatal exception: code 0xF8001010ei
lWindows fatal exception: ecode 0xs8001010e\
CWindows fatal exception: hcode 0xi8001010em
eraX 1.3\bin\libWindows fatal exception: code 0x\8001010es
ite-pWindows fatal exception: acode 0xck8001010ea
gWindows fatal exception: ecode 0xs8001010e\C
hWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: acode 0x8001010eX
_maWindows fatal exception: icode 0xn8001010e.
pWindows fatal exception: ycode 0x"8001010e, line
1018Windows fatal exception: in code 0xcode 0x
8001010e File
"Windows fatal exception: Ccode 0x:8001010e\
Program Files\ChimeraX 1Windows fatal exception: .code 0x38001010e\
bWindows fatal exception: icode 0xn8001010e\
lWindows fatal exception: icode 0xb8001010e\
rWindows fatal exception: ucode 0xn8001010ep
yWindows fatal exception: .code 0xp8001010ey
"Windows fatal exception: code 0x, line 8001010e87
in Windows fatal exception: _code 0xr8001010eu
nWindows fatal exception: _code 0xc8001010eo
dWindows fatal exception: ecode 0x
8001010e File
"Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010eg
ram Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_Windows fatal exception: acode 0xs8001010e_
maWindows fatal exception: icode 0xn8001010e
Windows fatal exception: Thread 0xcode 0x00000fac8001010e (most recent call first):
File Windows fatal exception: "code 0xC8001010e:
\Windows fatal exception: Pcode 0xro8001010eg
rWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010eh
iWindows fatal exception: mcode 0xe8001010er
aWindows fatal exception: Xcode 0x 18001010e.
3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packaWindows fatal exception: gcode 0xe8001010es
\cWindows fatal exception: hcode 0xi8001010em
eWindows fatal exception: rcode 0xa8001010ex
\Windows fatal exception: ucode 0xi8001010e\
gWindows fatal exception: ucode 0xi8001010e.
pWindows fatal exception: ycode 0x"8001010e, line
301Windows fatal exception: in code 0xe8001010ev
eWindows fatal exception: ncode 0xt8001010e_
lWindows fatal exception: ocode 0xo8001010ep
Windows fatal exception: File code 0x"8001010eC
:Windows fatal exception: \code 0xP8001010er
ogram Files\ChimeraX 1.3\bin\Windows fatal exception: libcode 0x\s8001010ei
tWindows fatal exception: e-code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
sWindows fatal exception: \code 0xC8001010eh
iWindows fatal exception: mcode 0xe8001010er
aWindows fatal exception: Xcode 0x_8001010em
aWindows fatal exception: icode 0xn8001010e.
pWindows fatal exception: ycode 0x"8001010e, line
867Windows fatal exception: in code 0xi8001010en
iWindows fatal exception: tcode 0x
8001010e File
"Windows fatal exception: Ccode 0x:8001010e\
Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00000fac (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00000fac (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00000fac (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00000fac (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00000fac (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 269 in event
Windows fatal exception: access violation
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
===== Log before crash start =====
> hide #2 atoms
> hide #2 cartoons
> select ligand
76 atoms, 78 bonds, 2 residues, 2 models selected
> show sel & #2 atoms
> select clear
> save C:\Users\c\Desktop\image5.png supersample 3
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> save "C:/Users/c/Dropbox/27. 연구 (2022)/__TMEM16A & Drug-Binding Site
> 연구__/__Figure & Manuscript__/Figure 6/efefe.pdb" selectedOnly true
> hide sel atoms
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\c\\\Dropbox\\\27. 연구 (2022)\\\\__TMEM16A & Drug-Binding
> Site 연구__\\\\__Figure & Manuscript__\\\Figure 6\\\saltBridge.cxs"
Log from Tue Jun 28 09:59:35 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\c\\\Dropbox\\\27. 연구 (2022)\\\\__TMEM16A & Drug-Binding
> Site 연구__\\\\__Figure & Manuscript__\\\Figure 6\\\saltBridge.cxs"
Log from Mon Jun 27 19:26:16 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:\\\Users\\\c\\\Desktop\\\Ctrl.pdb
Chain information for Ctrl.pdb #1
---
Chain | Description
X | No description available
> open C:/Users/c/Desktop/Mag.pdb
Chain information for Mag.pdb #2
---
Chain | Description
X | No description available
> open C:/Users/c/Desktop/Hon.pdb
Chain information for Hon.pdb #3
---
Chain | Description
X | No description available
> ui tool show Matchmaker
> matchmaker #2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Ctrl.pdb, chain X (#1) with Mag.pdb, chain X (#2), sequence
alignment score = 3643.8
RMSD between 389 pruned atom pairs is 1.090 angstroms; (across all 760 pairs:
8.790)
> matchmaker #3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Ctrl.pdb, chain X (#1) with Hon.pdb, chain X (#3), sequence
alignment score = 3664.8
RMSD between 352 pruned atom pairs is 1.150 angstroms; (across all 760 pairs:
8.275)
> set bgColor white
> graphics silhouettes true
> lighting soft
> hide atoms
> hide cartoons
> select #1/X
12579 atoms, 12736 bonds, 760 residues, 1 model selected
> show sel cartoons
> select #1/X#2/X#3/X
37719 atoms, 38190 bonds, 2280 residues, 3 models selected
> ui tool show "Color Actions"
[Repeated 1 time(s)]
> color sel steel blue
> windowsize 800 800
> ui tool show "Show Sequence Viewer"
> sequence chain #1/X
Alignment identifier is 1/X
> sequence chain #2/X
Alignment identifier is 2/X
> sequence chain #3/X
Alignment identifier is 3/X
> select #1/X:213-264
786 atoms, 796 bonds, 52 residues, 1 model selected
> select #1/X:213-366
2539 atoms, 2571 bonds, 154 residues, 1 model selected
> select #1/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #1/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #1/X:365,473
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #1/X:365,453,473
61 atoms, 58 bonds, 3 residues, 1 model selected
> select #1/X:365,453,473,483
76 atoms, 72 bonds, 4 residues, 1 model selected
> show sel cartoons
> show sel atoms
> color sel byelement
> ui tool show "Side View"
> select #2/X
12579 atoms, 12736 bonds, 760 residues, 1 model selected
> show sel cartoons
> show sel atoms
> hide sel atoms
> hide sel cartoons
> select #1/X:14
18 atoms, 17 bonds, 1 residue, 1 model selected
> select #1/X:15
25 atoms, 24 bonds, 1 residue, 1 model selected
> select add #1/X:14
43 atoms, 41 bonds, 2 residues, 1 model selected
> select #1/X:483@OE1
1 atom, 1 residue, 1 model selected
> select add #1/X:453@HZ1
2 atoms, 2 residues, 1 model selected
> ui tool show Distances
> select up
37 atoms, 35 bonds, 2 residues, 1 model selected
> select down
2 atoms, 2 residues, 1 model selected
> distance #1/X:453@HZ1 #1/X:483@OE1
Distance between Ctrl.pdb #1/X LYS 453 HZ1 and GLU 483 OE1: 1.722Å
> select #1/X:453@HZ2
1 atom, 1 residue, 1 model selected
> select add #1/X:473@OE1
2 atoms, 2 residues, 1 model selected
> distance #1/X:453@HZ2 #1/X:473@OE1
Distance between Ctrl.pdb #1/X LYS 453 HZ2 and GLU 473 OE1: 1.570Å
> select clear
> select #1/X:473@OE2
1 atom, 1 residue, 1 model selected
> select add #1/X:365@HH11
2 atoms, 2 residues, 1 model selected
> distance #1/X:473@OE2 #1/X:365@HH11
Distance between Ctrl.pdb #1/X GLU 473 OE2 and ARG 365 HH11: 3.823Å
> delete description
Missing or invalid "atoms" argument: invalid atoms specifier
> delete description
Missing or invalid "atoms" argument: invalid atoms specifier
> select clear
[Repeated 1 time(s)]
> delete description
Missing or invalid "atoms" argument: invalid atoms specifier
> delete label
Missing or invalid "atoms" argument: invalid atoms specifier
> delete label
Missing or invalid "atoms" argument: invalid atoms specifier
> label delete
> select clear
> distance style color cyan
> distance style color #aaaaff
> distance style color #00aaff
> distance style color cyan
> distance style color yellow
> select clear
[Repeated 1 time(s)]
> distance style color white
> distance style color yellow
> distance style color white
> distance style color yellow
> select clear
Must select one or more distances in the table
> ~distance #1/X:473@OE2 #1/X:365@HH11
> save C:\Users\c\Desktop\image1.png supersample 3
> select #1/X
12579 atoms, 12736 bonds, 2 pseudobonds, 760 residues, 2 models selected
> hide sel cartoons
> hide sel atoms
> select #2/X
12579 atoms, 12736 bonds, 760 residues, 1 model selected
> show sel cartoons
> select #2/X:212
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/X:212
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365,473
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #2/X:365,473,483
54 atoms, 51 bonds, 3 residues, 1 model selected
> select #2/X:365,453,473,483
76 atoms, 72 bonds, 4 residues, 1 model selected
> show sel atoms
> color sel byelement
> select #2/X:660-661
22 atoms, 21 bonds, 2 residues, 1 model selected
> select #2/X:660-662
42 atoms, 42 bonds, 3 residues, 1 model selected
> select #2/X:760
27 atoms, 26 bonds, 1 residue, 1 model selected
> select #2/X:760
27 atoms, 26 bonds, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> select #2/X:455
24 atoms, 23 bonds, 1 residue, 1 model selected
> select up
601 atoms, 611 bonds, 34 residues, 1 model selected
> select up
12579 atoms, 12736 bonds, 760 residues, 1 model selected
> show sel atoms
> hide sel atoms
> select UNK
Expected an objects specifier or a keyword
> select #1.UNK
Expected an objects specifier or a keyword
> select #2.UNK
Expected an objects specifier or a keyword
> select resname UNK
Expected an objects specifier or a keyword
> select ligand
76 atoms, 78 bonds, 2 residues, 2 models selected
> show sel atoms
> select #3/A:1529@C12
1 atom, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> hide sel atoms
> select add #2/A:1526@C14
39 atoms, 39 bonds, 2 residues, 2 models selected
> select subtract #2/A:1526@C14
38 atoms, 39 bonds, 1 residue, 1 model selected
> select up
40 atoms, 40 bonds, 2 residues, 2 models selected
> select up
76 atoms, 78 bonds, 2 residues, 2 models selected
> select down
40 atoms, 40 bonds, 2 residues, 2 models selected
> select up
76 atoms, 78 bonds, 2 residues, 2 models selected
> select down
40 atoms, 40 bonds, 2 residues, 2 models selected
> select up
76 atoms, 78 bonds, 2 residues, 2 models selected
> select down
40 atoms, 40 bonds, 2 residues, 2 models selected
> select up
76 atoms, 78 bonds, 2 residues, 2 models selected
> select down
40 atoms, 40 bonds, 2 residues, 2 models selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> select #2/X:474
15 atoms, 14 bonds, 1 residue, 1 model selected
> select clear
[Repeated 5 time(s)]
> select add #2/A:1526@H18
1 atom, 1 bond, 1 residue, 1 model selected
> hide sel atoms
> select clear
[Repeated 1 time(s)]
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365,473
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #2/X:365,473,483
54 atoms, 51 bonds, 3 residues, 1 model selected
> select #2/X:365,453,473,483
76 atoms, 72 bonds, 4 residues, 1 model selected
> show sel atoms
> color sel byelement
> select #2/A:1526@C14
1 atom, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 38 atom styles
> style sel stick
Changed 38 atom styles
> style sel ringFill thin
Changed 1 residue ring style
> style sel ringFill off
Changed 1 residue ring style
> select up
12617 atoms, 12775 bonds, 761 residues, 1 model selected
> select down
38 atoms, 39 bonds, 1 residue, 1 model selected
> select up
12617 atoms, 12775 bonds, 761 residues, 1 model selected
> select down
38 atoms, 39 bonds, 1 residue, 1 model selected
> show sel atoms
> color sel byelement
> select clear
> select #2/X:483@OE1
1 atom, 1 residue, 1 model selected
> select #2/X:453@HZ2
1 atom, 1 residue, 1 model selected
> select add #2/X:473@OE1
2 atoms, 2 residues, 1 model selected
> select subtract #2/X:473
1 atom, 1 residue, 1 model selected
> select #2/X:453@HZ2
1 atom, 1 residue, 1 model selected
> select #2/X:453@HZ2
1 atom, 1 residue, 1 model selected
> select #2/X:453@HZ2
1 atom, 1 residue, 1 model selected
> select clear
> select #2/X:453@HZ2
1 atom, 1 residue, 1 model selected
> select #2/X:473@OE1
1 atom, 1 residue, 1 model selected
> select add #2/X:453@HZ2
2 atoms, 2 residues, 1 model selected
> select #2/X:473@HB1
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select clear
> select #2/X:473@OE1
1 atom, 1 residue, 1 model selected
> select add #2/X:453@HZ2
2 atoms, 2 residues, 1 model selected
> distance #2/X:473@OE1 #2/X:453@HZ2
Distance between Mag.pdb #2/X GLU 473 OE1 and LYS 453 HZ2: 1.536Å
> label delete
> select clear
> save C:\Users\c\Desktop\image2.png supersample 3
> select #2/X
12579 atoms, 12736 bonds, 1 pseudobond, 760 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #1/X
12579 atoms, 12736 bonds, 2 pseudobonds, 760 residues, 2 models selected
> hide sel cartoons
> show sel cartoons
> select #1/X:280
22 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/X:280-282
56 atoms, 55 bonds, 3 residues, 1 model selected
> select #1/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #1/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #1/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #1/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #1/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #1/X:365,453
46 atoms, 44 bonds, 2 residues, 1 model selected
> select #1/X:365,453,473
61 atoms, 58 bonds, 1 pseudobond, 3 residues, 2 models selected
> select #1/X:365,453,473,483
76 atoms, 72 bonds, 2 pseudobonds, 4 residues, 2 models selected
> show sel atoms
> select #1/X:472
17 atoms, 16 bonds, 1 residue, 1 model selected
> select add #1/X:471
41 atoms, 39 bonds, 2 residues, 1 model selected
> hide sel cartoons
> select clear
> save C:\Users\c\Desktop\image3.png supersample 3
> save C:\Users\c\Desktop\image4.png supersample 3
> select #1/X
12579 atoms, 12736 bonds, 2 pseudobonds, 760 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select #3/X
12561 atoms, 12718 bonds, 760 residues, 1 model selected
> show sel cartoons
> select ligand
76 atoms, 78 bonds, 2 residues, 2 models selected
> show sel atoms
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> hide sel atoms
> select #3/X:366
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #3/X:366
24 atoms, 23 bonds, 1 residue, 1 model selected
> select add #3/X:474
39 atoms, 37 bonds, 2 residues, 1 model selected
> show sel atoms
> color sel byelement
> select #3/X:484
15 atoms, 14 bonds, 1 residue, 1 model selected
> select add #3/X:454
37 atoms, 35 bonds, 2 residues, 1 model selected
> show sel atoms
> color sel byelement
> select #3/X:484@OE1
1 atom, 1 residue, 1 model selected
> select #3/X:454@HZ3
1 atom, 1 residue, 1 model selected
> select add #3/X:474@OE2
2 atoms, 2 residues, 1 model selected
> distance #3/X:454@HZ3 #3/X:474@OE2
Distance between Hon.pdb #3/X LYS 454 HZ3 and GLU 474 OE2: 2.308Å
> label delete
> select clear
> save C:\Users\c\Desktop\image3.png supersample 3
> select #3/A:1529@C3
1 atom, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> color sel byelement
> select clear
> save C:\Users\c\Desktop\image4.png supersample 3
> select #3/X
12561 atoms, 12718 bonds, 1 pseudobond, 760 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select up
12563 atoms, 12719 bonds, 1 pseudobond, 761 residues, 2 models selected
> select up
12599 atoms, 12757 bonds, 1 pseudobond, 761 residues, 2 models selected
> hide sel cartoons
[Repeated 1 time(s)]
> hide sel atoms
> select #1/X
12579 atoms, 12736 bonds, 2 pseudobonds, 760 residues, 2 models selected
> show sel cartoons
> show sel atoms
> hide sel atoms
> select #1/X:164
21 atoms, 21 bonds, 1 residue, 1 model selected
> select #1/X:164-166
52 atoms, 53 bonds, 3 residues, 1 model selected
> select #1/X:164-166
52 atoms, 53 bonds, 3 residues, 1 model selected
> select #1/X:365,453,473,483
76 atoms, 72 bonds, 2 pseudobonds, 4 residues, 2 models selected
> show sel atoms
> select clear
> save C:\Users\c\Desktop\image5.png supersample 3
> hide cartoons
> hide atoms
> select #2/X
12579 atoms, 12736 bonds, 1 pseudobond, 760 residues, 2 models selected
> show sel cartoons
> select #2/X:367
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #2/X:367-369
38 atoms, 37 bonds, 3 residues, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:473
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/X:473
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/X:365,473
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #2/X:365,473,483
54 atoms, 51 bonds, 3 residues, 1 model selected
> select #2/X:365,453,473,483
76 atoms, 72 bonds, 1 pseudobond, 4 residues, 2 models selected
> show sel atoms
> select ligand
76 atoms, 78 bonds, 2 residues, 2 models selected
> show sel atoms
> select #3/A:1529@C15
1 atom, 1 residue, 1 model selected
> select up
38 atoms, 39 bonds, 1 residue, 1 model selected
> select up
12599 atoms, 12757 bonds, 761 residues, 1 model selected
> select down
38 atoms, 39 bonds, 1 residue, 1 model selected
> hide sel atoms
> save C:\Users\c\Desktop\image6.png supersample 3
> save C:/Users/c/Desktop/saltBridge/saltBridge.pdb
> save C:/Users/c/Desktop/saltBridge/saltBridge.cxs
——— End of log from Mon Jun 27 19:26:16 2022 ———
opened ChimeraX session
> select up
40 atoms, 40 bonds, 2 residues, 2 models selected
> select up
76 atoms, 78 bonds, 2 residues, 2 models selected
> hide sel atoms
> save C:\Users\c\Desktop\image1.png supersample 3
> hide #2 models
> hide #3 models
> show #3 models
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> select #3/X
12561 atoms, 12718 bonds, 1 pseudobond, 760 residues, 2 models selected
> show sel cartoons
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365,473
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #2/X:365,473,483-484
73 atoms, 70 bonds, 4 residues, 1 model selected
> select #2/X:365,473,483-484
73 atoms, 70 bonds, 4 residues, 1 model selected
> select #2/X:365,473,483-484
73 atoms, 70 bonds, 4 residues, 1 model selected
> select #2/X:483
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/X:483
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #2/X:473,483
30 atoms, 28 bonds, 2 residues, 1 model selected
> select #2/X:365,473,483
54 atoms, 51 bonds, 3 residues, 1 model selected
> select #2/X:365,453,473,483
76 atoms, 72 bonds, 1 pseudobond, 4 residues, 2 models selected
> show #1,3 atoms
> hide #1,3 atoms
> select #2
12617 atoms, 12775 bonds, 1 pseudobond, 761 residues, 2 models selected
> ~select #2
Nothing selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365,473
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #2/X:365,473,483-484
73 atoms, 70 bonds, 4 residues, 1 model selected
> select #2/X:365,453,473,483-484
95 atoms, 91 bonds, 1 pseudobond, 5 residues, 2 models selected
> show #1,3 atoms
> hide #1,3 atoms
> select clear
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365,473
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #2/X:365,473,483
54 atoms, 51 bonds, 3 residues, 1 model selected
> select #2/X:365,453,473,483
76 atoms, 72 bonds, 1 pseudobond, 4 residues, 2 models selected
> show #1,3 atoms
> hide #1,3 atoms
> select #1
12579 atoms, 12736 bonds, 2 pseudobonds, 760 residues, 2 models selected
> ~select #1
Nothing selected
> select clear
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #3/X
12561 atoms, 12718 bonds, 1 pseudobond, 760 residues, 2 models selected
> select #3/X:294-295
35 atoms, 35 bonds, 2 residues, 1 model selected
> select #3/X:294-295
35 atoms, 35 bonds, 2 residues, 1 model selected
> select #3/X:366
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #3/X:366
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #3/X:366,474
39 atoms, 37 bonds, 2 residues, 1 model selected
> select #3/X:366,454,474
61 atoms, 58 bonds, 1 pseudobond, 3 residues, 2 models selected
> select #3/X:366,454,474,484
76 atoms, 72 bonds, 1 pseudobond, 4 residues, 2 models selected
> show sel atoms
> select clear
> save C:\Users\c\Desktop\image2.png supersample 3
> windowsize 800 800
> save C:\Users\c\Desktop\image3.png supersample 3
> hide #1,3 atoms
> hide #1,3 cartoons
> select #2/X
12579 atoms, 12736 bonds, 1 pseudobond, 760 residues, 2 models selected
> show #1,3 cartoons
> select #2/X:439
20 atoms, 20 bonds, 1 residue, 1 model selected
> select #2/X:439-440
36 atoms, 36 bonds, 2 residues, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:365
24 atoms, 23 bonds, 1 residue, 1 model selected
> select #2/X:452-453
42 atoms, 42 bonds, 2 residues, 1 model selected
> select #2/X:452-453
42 atoms, 42 bonds, 2 residues, 1 model selected
> select #2/X:453
22 atoms, 21 bonds, 1 residue, 1 model selected
> select #2/X:452-453
42 atoms, 42 bonds, 2 residues, 1 model selected
> select #2/X:453
22 atoms, 21 bonds, 1 residue, 1 model selected
> select #2/X:453
22 atoms, 21 bonds, 1 residue, 1 model selected
> select #2/X:453,483-484
56 atoms, 54 bonds, 3 residues, 1 model selected
> select #2/X:453-454
29 atoms, 28 bonds, 2 residues, 1 model selected
> select #2/X:453-454
29 atoms, 28 bonds, 2 residues, 1 model selected
> select #2/X:453
22 atoms, 21 bonds, 1 residue, 1 model selected
> select #2/X:453
22 atoms, 21 bonds, 1 residue, 1 model selected
> select #2/X:453,483
37 atoms, 35 bonds, 2 residues, 1 model selected
> select #2/X:453,473,483
52 atoms, 49 bonds, 1 pseudobond, 3 residues, 2 models selected
> select #2/X:365,453,473,483
76 atoms, 72 bonds, 1 pseudobond, 4 residues, 2 models selected
> show #1,3 atoms
> hide #1,3 atoms
> show #2 models
> hide #2 models
> hide #3 models
> hide #1 models
> show #2 models
> select clear
> save C:\Users\c\Desktop\image4.png supersample 3
> save "C:/Users/c/Dropbox/27. 연구 (2022)/__TMEM16A & Drug-Binding Site
> 연구__/__Figure & Manuscript__/Figure 6/saltBridge.cxs"
——— End of log from Tue Jun 28 09:59:35 2022 ———
opened ChimeraX session
OpenGL version: 3.3.0 NVIDIA 512.95
OpenGL renderer: NVIDIA GeForce RTX 3090/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: ASUS
Model: System Product Name
OS: Microsoft Windows 11 Pro (Build 22000)
Memory: 137,167,659,008
MaxProcessMemory: 137,438,953,344
CPU: 24 12th Gen Intel(R) Core(TM) i9-12900K
OSLanguage: ko-KR
Locale: ('ko_KR', 'cp949')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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