Opened 3 years ago

Closed 3 years ago

Last modified 3 years ago

#7127 closed defect (fixed)

problem running AlfaFold Prediction

Reported by: rubinjr@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Structure Prediction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

Hello,  lately I have not been able to run any AlfaFold predictions on
Chimerax. There seems to be a problem downloading and running AlfaFold and
energy minimization programs. This is a new problem never before
encountered on ChimeraX.  Any advice would be most welcome.  Thank You.
John Rubin  University of Michigan

Change History (3)

comment:1 by pett, 3 years ago

Component: Unassigned → Structure Prediction
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned

Reported by John Rubin

comment:2 by Tom Goddard, 3 years ago

Resolution: → fixed
Status: assigned → closed

I just fixed a problem running AlphaFold predictions in ChimeraX described on the ChimeraX mailing list

​https://www.rbvi.ucsf.edu/pipermail/chimerax-users/2022-June/003882.html

All AlphaFold predictions were broken because Google moved the location of a library called jaxlib that AlphaFold uses. You do not need a new ChimeraX. The fix was in the AlphaFold installation script that ChimeraX gets from GitHub each time a prediction is run. Let me know if this is not the problem you encountered.

in reply to:  3 ; comment:3 by rubinjr@…, 3 years ago 

Thank You  Tom!   and thank you for your quick response.  Best Regards
John Rubin

On Mon, Jun 20, 2022 at 4:56 PM ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
wrote:
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