Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 280, in process data = sm.take_snapshot(obj, session, self.state_flags) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\seq-view\tool.py", line 656, in take_snapshot 'ToolInstance': ToolInstance.take_snapshot(self, session, flags), File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\tools.py", line 96, in take_snapshot data['shown'] = self.tool_window.shown File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 1908, in shown return self.__toolkit.shown File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 2187, in shown return not self.dock_widget.isHidden() RuntimeError: wrapped C/C++ object of type QDockWidget has been deleted The above exception was the direct cause of the following exception: Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 259, in discovery self.processed[key] = self.process(obj, parents) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 283, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> -> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 826, in save session.save(output, version=version, include_maps=include_maps) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 583, in save mgr.discovery(self._state_containers) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: 'tools' -> -> : Error while saving session data for 'tools' -> -> ValueError: error processing: 'tools' -> -> : Error while saving session data for 'tools' -> -> File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 280, in process data = sm.take_snapshot(obj, session, self.state_flags) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\seq-view\tool.py", line 656, in take_snapshot 'ToolInstance': ToolInstance.take_snapshot(self, session, flags), File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\tools.py", line 96, in take_snapshot data['shown'] = self.tool_window.shown File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 1908, in shown return self.__toolkit.shown File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 2187, in shown return not self.dock_widget.isHidden() RuntimeError: wrapped C/C++ object of type QDockWidget has been deleted The above exception was the direct cause of the following exception: Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 259, in discovery self.processed[key] = self.process(obj, parents) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 283, in process raise RuntimeError(msg) from e RuntimeError: Error while saving session data for 'tools' -> -> During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py", line 1574, in action.triggered.connect(lambda arg, cb = callback: cb()) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\dialog.py", line 102, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output file", File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog _dlg.display(session, **kw) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\dialog.py", line 48, in display run(session, cmd) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\run.py", line 31, in run results = command.run(text, log=log) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\cmd.py", line 66, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2805, in run result = ci.function(session, **kw_args) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\save_command\cmd.py", line 79, in provider_save mgr).save(session, path, **provider_kw) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core_formats\__init__.py", line 79, in save return cxs_save(session, path, **kw) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 826, in save session.save(output, version=version, include_maps=include_maps) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 583, in save mgr.discovery(self._state_containers) File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) ValueError: error processing: 'tools' -> -> : Error while saving session data for 'tools' -> -> ValueError: error processing: 'tools' -> -> : Error while saving session data for 'tools' -> -> File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\core\session.py", line 261, in discovery raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e)) See log for complete Python traceback.