![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7012 closed defect (nonchimerax)
No space left on device
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19041
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
> open D:\\\anscse25.cxs
Log from Thu Jun 2 22:22:36 2022UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
> open D:/anscse25.cxs
Log from Thu Jun 2 22:18:28 2022UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
> open D:\\\MS_HIVproject1_revised\\\set2.cxs
Log from Sat Jun 19 09:12:27 2021UCSF ChimeraX version: 1.2 (2021-04-27)
© 2016-2021 Regents of the University of California. All rights reserved.
> open D:/set1.cxs
Log from Sat Jun 19 07:43:12 2021UCSF ChimeraX version: 1.2 (2021-04-27)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "D:/PhD work/Desktop/MD NOW/OK PROTEIN AND OK LIGAND
> AfterPMUSICsuggest(protein protonation)/4ll3_improvedII_cutCONNECT.pdb"
Summary of feedback from opening D:/PhD work/Desktop/MD NOW/OK PROTEIN AND OK
LIGAND AfterPMUSICsuggest(protein protonation)/4ll3_improvedII_cutCONNECT.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Accelrys Discovery Studio PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2021-02-13T12:29:22Z
Chain information for 4ll3_improvedII_cutCONNECT.pdb #1
---
Chain | Description
? | No description available
> select /?
1558 atoms, 1587 bonds, 199 residues, 1 model selected
> select clear
> select backbone
794 atoms, 792 bonds, 198 residues, 1 model selected
> hide sel target a
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> hide sel target a
> select /?
1558 atoms, 1587 bonds, 199 residues, 1 model selected
> select /?:1-99
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> sequence chain #1/?
Alignment identifier is 1/
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-15
Expected an objects specifier or a keyword
> select / :1-16
Expected an objects specifier or a keyword
> select / :1-16
Expected an objects specifier or a keyword
> select / :1-16
Expected an objects specifier or a keyword
> select / :1-16
Expected an objects specifier or a keyword
> select / :1-16
Expected an objects specifier or a keyword
> select / :1-16
Expected an objects specifier or a keyword
> select / :1-17
Expected an objects specifier or a keyword
> select / :1-17
Expected an objects specifier or a keyword
> select / :1-18
Expected an objects specifier or a keyword
> select / :1-18
Expected an objects specifier or a keyword
> select / :1-18
Expected an objects specifier or a keyword
> select / :1-19
Expected an objects specifier or a keyword
> select / :1-19
Expected an objects specifier or a keyword
> select / :1-19
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-59
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-69
Expected an objects specifier or a keyword
> select / :1-59
Expected an objects specifier or a keyword
> select / :1-49
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-60
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-40
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-30
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-18
Expected an objects specifier or a keyword
> select / :1-18
Expected an objects specifier or a keyword
> select / :1-18
Expected an objects specifier or a keyword
> select / :1-18
Expected an objects specifier or a keyword
> select / :1-19
Expected an objects specifier or a keyword
> select / :1-19
Expected an objects specifier or a keyword
> select / :1-29
Expected an objects specifier or a keyword
> select / :1-29
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-39
Expected an objects specifier or a keyword
> select / :1-49
Expected an objects specifier or a keyword
> select / :1-49
Expected an objects specifier or a keyword
> select / :1-49
Expected an objects specifier or a keyword
> select / :1-49
Expected an objects specifier or a keyword
> select / :1-49
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select clear
> select / :1
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-19
Expected an objects specifier or a keyword
> select / :1-19
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-17
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1-10
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1
Expected an objects specifier or a keyword
> select / :1-2
Expected an objects specifier or a keyword
> select / :1-3
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-4
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-5
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-6
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-7
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-8
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-9
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-20
Expected an objects specifier or a keyword
> select / :1-50
Expected an objects specifier or a keyword
> select / :28-38
Expected an objects specifier or a keyword
> select / :28-38
Expected an objects specifier or a keyword
> select / :28-48
Expected an objects specifier or a keyword
> select / :28-48
Expected an objects specifier or a keyword
> select / :28-58
Expected an objects specifier or a keyword
> select / :28-68
Expected an objects specifier or a keyword
> select / :83-97
Expected an objects specifier or a keyword
> select / :83-97
Expected an objects specifier or a keyword
> select / :83-97
Expected an objects specifier or a keyword
> select / :83-98
Expected an objects specifier or a keyword
> select / :83-98
Expected an objects specifier or a keyword
> select / :83-98
Expected an objects specifier or a keyword
> select / :83-98
Expected an objects specifier or a keyword
> select / :83-99
Expected an objects specifier or a keyword
> select / :83-99
Expected an objects specifier or a keyword
> select / :83-99
Expected an objects specifier or a keyword
> select / :83-99
Expected an objects specifier or a keyword
> select / :83-99
Expected an objects specifier or a keyword
> select / :83-99
Expected an objects specifier or a keyword
> select / :83-99
Expected an objects specifier or a keyword
> select /?
1558 atoms, 1587 bonds, 199 residues, 1 model selected
> select clear
> select clear
> select clear
> select /?:20
18 atoms, 16 bonds, 2 residues, 1 model selected
> select /?:21
18 atoms, 16 bonds, 2 residues, 1 model selected
Drag select of 5 atoms, 79 residues, 5 bonds
Drag select of 31 atoms, 118 residues, 32 bonds
> select clear
> select /?:20
18 atoms, 16 bonds, 2 residues, 1 model selected
> select clear
Drag select of 52 residues
> select clear
> open "D:/PhD work/Desktop/MD NOW/OK PROTEIN AND OK LIGAND
> AfterPMUSICsuggest(protein protonation)/4ll3pro.pdb"
Summary of feedback from opening D:/PhD work/Desktop/MD NOW/OK PROTEIN AND OK
LIGAND AfterPMUSICsuggest(protein protonation)/4ll3pro.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Accelrys Discovery Studio PDB file
Ignored bad PDB record found on line 2
REMARK Created: 2020-11-02T20:03:06Z
Chain information for 4ll3pro.pdb #2
---
Chain | Description
A B | No description available
> select #1/?
1558 atoms, 1587 bonds, 199 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> preset "molecular surfaces" "ghostly white"
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color white targ s trans 80
> ui tool show "Color Actions"
> set bgColor white
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> hide (#!2 & sel) target a
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> ui tool show "Color Actions"
> set bgColor deep pink
> undo
> preset "molecular surfaces" "atomic coloring (transparent)"
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color fromatoms targ s trans 70
> preset "molecular surfaces" "atomic coloring (transparent)"
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color fromatoms targ s trans 70
> preset "molecular surfaces" "chain id coloring (opaque)"
Changed 0 atom styles
Preset expands to these ChimeraX commands:
style (protein|nucleic|solvent) & @@draw_mode=0 stick
surface
color bychain targ s trans 0
> transparency (#!2 & sel) 50
> select clear
> ui tool show "Color Actions"
> set bgColor white
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> surface hidePatches (#!2 & sel)
> select clear
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> ui tool show "Color Actions"
> set bgColor orchid
> select #2
1558 atoms, 1587 bonds, 199 residues, 1 model selected
> ~select #2
2 models selected
> ui tool show "Color Actions"
> color white
> undo
> ui tool show "Color Actions"
> select clear
> ui tool show "Color Actions"
> set bgColor white
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> ui tool show "Color Actions"
> color sel deep pink target a
> color sel deep pink target ac
> color sel byhetero
> color sel byelement
> color sel medium violet red target c
> color sel deep pink target s
> select clear
> lighting simple
> view
> ui tool show "Side View"
> select /B
760 atoms, 773 bonds, 99 residues, 1 model selected
> ui tool show "Color Actions"
> color sel medium blue target cs
> color sel blue target cs
> color sel medium blue target cs
> color sel deep sky blue target s
> color sel deep sky blue target s
> select clear
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> surface (#!2 & sel)
> transparency (#!2 & sel) 50
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> transparency (#!2 & sel) 80
> select clear
> select /B
760 atoms, 773 bonds, 99 residues, 1 model selected
> ui tool show "Color Actions"
> color sel blue target s
> transparency (#!2 & sel) 90
> select clear
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> transparency (#!2 & sel) 90
> select clear
> select /B
760 atoms, 773 bonds, 99 residues, 1 model selected
> surface hidePatches (#!2 & sel)
> color sel blue target s
> color sel deep sky blue target s
> color sel cyan target s
> color sel blue target s
> color sel blue target s
> color sel light sky blue target s
> color sel light sky blue target s
> surface (#!2 & sel)
> transparency (#!2 & sel) 80
> transparency (#!2 & sel) 70
> transparency (#!2 & sel) 50
> transparency (#!2 & sel) 60
> transparency (#!2 & sel) 80
> select clear
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> ui tool show "Color Actions"
> color sel deep pink target s
> color sel violet target s
> color sel deep pink target c
> color sel deep pink target c
> transparency (#!2 & sel) 80
> select clear
> ui tool show "Color Actions"
> select ligand
38 atoms, 41 bonds, 1 residue, 1 model selected
> style sel ball
Changed 38 atom styles
> ui tool show "Color Actions"
> color sel purple target a
> color sel cyan target a
> color sel lime target a
> color sel forest green target a
> color sel light green target a
> color sel pale green target a
> color sel dark sea green target a
> color sel dim gray target a
> color sel red target a
> color sel orange red target a
> color sel orange target a
> color sel yellow target a
> color sel lime target a
> color sel purple target a
> color sel byhetero
> color sel forest green target a
> color sel byhetero
> color sel light sea green target a
> color sel byhetero
> color sel cornflower blue target a
> color sel purple target a
> color sel hot pink target a
> color sel purple target a
> color sel byhetero
> color sel magenta target a
> color sel blue target a
> color sel light sea green target a
> color sel cyan target a
> color sel light sea green target a
> color sel byhetero
> color sel forest green target a
> color sel pale green target a
> color sel light green target a
> color sel dark sea green target a
> color sel forest green target a
> color sel lime green target a
> color sel forest green target a
> color sel byhetero
> color sel sea green target a
> color sel olive drab target a
> color sel olive drab target a
> color sel sea green target a
> color sel medium sea green target a
> color sel forest green target a
> color sel lime green target a
> color sel spring green target a
> color sel lawn green target a
> color sel chartreuse target a
> color sel chartreuse target a
> color sel chartreuse target a
> color sel spring green target a
> color sel byhetero
> color sel lawn green target a
> color sel green target a
> color sel lime target a
> color sel byhetero
> color sel chartreuse target a
> color sel byhetero
> color sel lime target a
> color sel byhetero
> color sel spring green target a
> color sel lime green target a
> color sel forest green target a
> color sel byhetero
> color sel green target a
> color sel forest green target a
> color sel byhetero
> color sel lime green target a
> color sel sea green target a
> color sel byhetero
> color sel forest green target a
> color sel byhetero
> color sel olive target a
> color sel dark salmon target a
> color sel salmon target a
> color sel salmon target a
> color sel peru target a
> color sel light salmon target a
> color sel byhetero
> ui tool show "Side View"
> ui tool show "Side View"
> ui tool show "Color Actions"
> color sel green target a
> color sel byhetero
> color sel chartreuse target a
> color sel forest green target a
> color sel olive target a
> color sel byhetero
> color sel spring green target a
> color sel lime green target a
> color sel forest green target a
> color sel peru target a
> color sel dark goldenrod target a
> color sel chartreuse target a
> color sel lawn green target a
> color sel lime target a
> color sel medium spring green target a
> color sel dark turquoise target a
> color sel cornflower blue target a
> color sel dark cyan target a
> color sel medium aquamarine target a
> color sel dark cyan target a
> color sel byhetero
> color sel yellow green target a
> color sel byhetero
> color sel yellow green target a
> color sel byhetero
> color sel dark goldenrod target a
> color sel yellow green target a
> color sel byhetero
> color sel medium slate blue target a
> color sel yellow green target a
> color sel byhetero
> color sel medium violet red target a
> color sel medium orchid target a
> color sel orchid target a
> color sel blue violet target a
> color sel hot pink target a
> color sel orchid target a
> color sel medium orchid target a
> color sel medium violet red target a
> color sel medium violet red target a
> color sel dark magenta target a
> color sel purple target a
> color sel byhetero
> color sel pale violet red target a
> color sel pale violet red target a
> color sel midnight blue target a
> color sel dark slate gray target a
> color sel lime green target a
> color sel yellow green target a
> color sel byhetero
> color sel olive drab target a
> color sel byhetero
> color sel medium spring green target a
> color sel dark turquoise target a
> color sel byhetero
> color sel yellow green target a
> color sel byhetero
> color sel dark turquoise target a
> color sel byhetero
> color sel lime target a
> color sel sea green target a
> color sel medium sea green target a
> color sel yellow green target a
> color sel byhetero
> color sel teal target a
> color sel byhetero
> color sel dark cyan target a
> color sel dark cyan target a
> color sel teal target a
> color sel light sea green target a
> color sel byhetero
> color sel light sea green target a
> color sel byhetero
> color sel yellow green target a
> color sel byhetero
> color sel lime target a
> color sel green target a
> color sel chartreuse target a
> color sel lawn green target a
> color sel spring green target a
> color sel spring green target a
> color sel lime green target a
> color sel byhetero
> color sel yellow green target a
> color sel byhetero
> color sel dim gray target a
> color sel byhetero
> color sel forest green target a
> color sel medium sea green target a
> color sel sea green target a
> color sel sea green target a
> color sel byhetero
> color sel dark goldenrod target a
> color sel yellow green target a
> color sel byhetero
> color sel forest green target a
> color sel byhetero
> color sel yellow green target a
> color sel byhetero
> color sel light sea green target a
> color sel byhetero
> color sel light sea green target a
> color sel byhetero
> color sel medium slate blue target a
> color sel dark turquoise target a
> color sel light sea green target a
> color sel dark turquoise target a
> color sel byhetero
> color sel dark turquoise target a
> color sel byhetero
> select clear
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> surface hidePatches (#!2 & sel)
> cartoon style (#!2 & sel) xsection rectangle modeHelix default
> cartoon style (#!2 & sel) xsection rectangle modeHelix default
> cartoon style (#!2 & sel & coil) xsection oval
> cartoon style (#!2 & sel) xsection barbell modeHelix default
> cartoon style (#!2 & sel) modeHelix tube sides 20
> cartoon style (#!2 & sel & coil) xsection oval
> cartoon style (#!2 & sel) xsection barbell modeHelix default
> cartoon style (#!2 & sel) xsection rectangle modeHelix default
> cartoon style (#!2 & sel) xsection oval modeHelix default
> cartoon style (#!2 & sel) xsection rectangle modeHelix default
> surface (#!2 & sel)
> select clear
> save D:/set1.cxs
——— End of log from Sat Jun 19 07:43:12 2021 ———
opened ChimeraX session
> ui tool show "Side View"
> select main
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> transparency (#!2 & sel) 0
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> select clear
> select clear
>
> a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> /a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
/a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> /A-B:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
/A-B:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> /A,B:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
/A,B:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> /a,b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
/a,b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> /a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
/a-b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> $sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
$sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> $ sel
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: $ sel
:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
736 atoms, 740 bonds, 98 residues, 1 model selected
> transparency (#!2 & sel) 90
> transparency (#!2 & sel) 80
> select clear
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
736 atoms, 740 bonds, 98 residues, 1 model selected
> transparency (#!2 & sel) 90
> select clear
> select :53.B,52.B,54.B
Expected an objects specifier or a keyword
> sel:
> 53:B,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel:
53:B,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> sel:
> 53.b,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel:
53.b,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> sel:
> 53.B,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel:
53.B,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> /A,B:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: /A,B:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> /a,b:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: /a,b:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
>
> /a,b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command:
/a,b:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> /a,b
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: /a,b
:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> a/
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: a/
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> sel:
> 53.a,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel:
53.a,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> sel: 53.a
> ,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel: 53.a
,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> sel: 53.B
> ,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel: 53.B
,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> select clear
> select clear
> sel: 53.b
> ,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: sel: 53.b
,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> : 53.b
> ,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
Unknown command: : 53.b
,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1
> select : 53.b ,52.b ,54.b ,47.b ,48.b ,50.b ,51.b ,49.b ,80.b ,81.b ,82.b
> ,83.b ,84.b ,79.b ,85.b ,86.b ,87.b ,88.b ,90.b ,91.b ,92.b ,93.b ,94.b
> ,95.b ,96.b ,97.b ,98.b ,99.b ,30.b ,29.b ,28.b ,27.b ,25.b ,24.b ,23.b
> ,22.b ,21.b ,11.b ,12.b ,10.b ,9.b ,8.b ,7.b ,6.b ,5.b ,4.b ,3.b ,2.b ,1.b
Expected an objects specifier or a keyword
> sel: 53.b ,52.b ,54.b ,47.b ,48.b ,50.b ,51.b ,49.b ,80.b ,81.b ,82.b ,83.b
> ,84.b ,79.b ,85.b ,86.b ,87.b ,88.b ,90.b ,91.b ,92.b ,93.b ,94.b ,95.b
> ,96.b ,97.b ,98.b ,99.b ,30.b ,29.b ,28.b ,27.b ,25.b ,24.b ,23.b ,22.b
> ,21.b ,11.b ,12.b ,10.b ,9.b ,8.b ,7.b ,6.b ,5.b ,4.b ,3.b ,2.b ,1.b
Unknown command: sel: 53.b ,52.b ,54.b ,47.b ,48.b ,50.b ,51.b ,49.b ,80.b
,81.b ,82.b ,83.b ,84.b ,79.b ,85.b ,86.b ,87.b ,88.b ,90.b ,91.b ,92.b ,93.b
,94.b ,95.b ,96.b ,97.b ,98.b ,99.b ,30.b ,29.b ,28.b ,27.b ,25.b ,24.b ,23.b
,22.b ,21.b ,11.b ,12.b ,10.b ,9.b ,8.b ,7.b ,6.b ,5.b ,4.b ,3.b ,2.b ,1.b
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel: 26
Unknown command: sel: 26
> select clear
> sel: 26
Unknown command: sel: 26
> select : 26
14 atoms, 12 bonds, 2 residues, 1 model selected
> transparency (#!2 & sel) 90
> select /B:17@CA
1 atom, 1 residue, 1 model selected
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> ui windowfill toggle
> select ligand
38 atoms, 41 bonds, 1 residue, 1 model selected
> save D:/set2.cxs
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select clear
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34
768 atoms, 772 bonds, 102 residues, 1 model selected
> transparency (#!2 & sel) 80
> select clear
> select clear
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34,
> 83.b
Expected an objects specifier or a keyword
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34,
> 83.b
Expected an objects specifier or a keyword
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34,
> 83.b, 30.a
Expected an objects specifier or a keyword
> select :83.b, 30.a
Expected an objects specifier or a keyword
> select :83.b
Expected an objects specifier or a keyword
> select :83.b
Expected an objects specifier or a keyword
> select :83.b
Expected an objects specifier or a keyword
> select :83.b
Expected an objects specifier or a keyword
> select :83.b
Expected an objects specifier or a keyword
> select :83
16 atoms, 14 bonds, 2 residues, 1 model selected
> select clear
> select :32
14 atoms, 12 bonds, 2 residues, 1 model selected
> transparency (#!2 & sel) 80
> select clear
> select :93
16 atoms, 14 bonds, 2 residues, 1 model selected
> select :69
20 atoms, 20 bonds, 2 residues, 1 model selected
> select :67
12 atoms, 10 bonds, 2 residues, 1 model selected
> transparency (#!2 & sel) 80
> select clear
> select :69
20 atoms, 20 bonds, 2 residues, 1 model selected
> transparency (#!2 & sel) 80
> select clear
> save D:/set2.cxs
> select ligand
38 atoms, 41 bonds, 1 residue, 1 model selected
> ui tool show "Color Actions"
> color sel slate blue
> color sel blue
> color sel orchid
> color sel blue violet
> color sel chartreuse
> color sel lawn green
> color sel forest green
> color sel medium sea green
> color sel yellow green
> color sel blue violet
> color sel light coral
> color sel burly wood
> color sel blue violet
> color sel royal blue
> color sel deep sky blue
> color sel dark turquoise
> color sel lime
> color sel lime green
> color sel forest green
> color sel green
> color sel dark cyan
> color sel teal
> color sel green
> color sel forest green
> color sel maroon
> color sel fire brick
> color sel maroon
> color sel byhetero
> color sel dark red
> color sel byhetero
> color sel chocolate
> color sel byhetero
> color sel sea green
> color sel forest green
> color sel lime green
> color sel byhetero
> color sel lawn green
> color sel byhetero
> color sel lawn green
> color sel byhetero
> select clear
> select ligand
38 atoms, 41 bonds, 1 residue, 1 model selected
> color sel salmon
> color sel dark salmon
> color sel olive
> color sel olive
> color sel lime
> color sel green
> color sel green
> color sel chartreuse
> color sel green
> color sel chartreuse
> color sel lawn green
> color sel spring green
> color sel spring green
> color sel lime green
> color sel forest green
> color sel medium sea green
> color sel sea green
> color sel forest green
> color sel byhetero
> select clear
> select ligand
38 atoms, 41 bonds, 1 residue, 1 model selected
> color sel gold
> color sel orange
> color sel dark orange
> color sel green yellow
> color sel yellow green
> color sel byhetero
> select clear
> select ligand
38 atoms, 41 bonds, 1 residue, 1 model selected
> color sel lime green
> color sel byhetero
> color sel forest green
> color sel byhetero
> color sel lime green
> color sel byhetero
> color sel lawn green
> color sel spring green
> color sel lawn green
> color sel spring green
> color sel spring green
> color sel byhetero
> color sel lime green
> color sel byhetero
> select clear
> save D:/set2.cxs
> save D:/set2.cxs
——— End of log from Sat Jun 19 09:12:27 2021 ———
opened ChimeraX session
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> ui tool show "Color Actions"
> color sel orange
> color sel salmon
> color sel dark turquoise
> color sel medium spring green
> color sel turquoise
> color sel medium turquoise
> color sel medium turquoise
> color sel dark turquoise
> select /B
760 atoms, 773 bonds, 99 residues, 1 model selected
> color sel burly wood
> color sel magenta
> color sel hot pink
> color sel sea green
> color sel medium sea green
> color sel forest green
> color sel forest green
> color sel orchid
> color sel pale violet red
> color sel midnight blue
> color sel pale turquoise
> color sel violet
> color sel violet
> color sel dark goldenrod
> color sel yellow green
> color sel dark goldenrod
> color sel yellow green
> color sel dodger blue
> color sel dodger blue
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> color sel orchid
> ui tool show "Color Actions"
> color sel olive
> color sel dark salmon
> color sel peru
> color sel tomato
> color sel chocolate
> color sel saddle brown
> color sel coral
> color sel sienna
> color sel indian red
> color sel gold
> color sel indian red
> color sel chocolate
> color sel coral
> color sel sienna
> color sel gold
> color sel orange
> color sel lime
> color sel chartreuse
> color sel spring green
> color sel medium sea green
> color sel brown
> color sel fire brick
> color sel orange
> color sel medium sea green
> color sel green yellow
> color sel light coral
> color sel aquamarine
> color sel magenta
> color sel dark olive green
> color sel medium blue
> color sel saddle brown
> color sel brown
> color sel indian red
> color sel sienna
> color sel goldenrod
> color sel salmon
> color sel slate gray
> color sel cadet blue
> color sel indigo
> color sel sea green
> color sel olive drab
> color sel cyan
> color sel orchid
> color sel dark violet
> color sel dark magenta
> select /B
760 atoms, 773 bonds, 99 residues, 1 model selected
> color sel teal
> color sel light sky blue
> color sel aquamarine
> color sel light blue
> color sel aquamarine
> color sel dark green
> color sel aquamarine
> color sel peru
> color sel dark khaki
> select clear
> select ligand
38 atoms, 41 bonds, 1 residue, 1 model selected
> color sel dark salmon
> color sel peru
> color sel cadet blue
> color sel coral
> color sel cyan
> color sel light green
> color sel black
> color sel dark green
> color sel black
> color sel seashell
> color sel khaki
> color sel lime
> color sel byhetero
> select clear
> select /B
760 atoms, 773 bonds, 99 residues, 1 model selected
> color sel yellow
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> color sel green yellow
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> color sel cyan
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> color sel cyan
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> color sel chocolate
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select clear
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> ui tool show "Side View"
>
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> sel:
> 53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command: sel:
53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
>
> sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Unknown command:
sel:53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
750 atoms, 756 bonds, 100 residues, 1 model selected
> transparency (#!2 & sel) 20
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> transparency (#!2 & sel) 80
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select clear
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34,32,67,69
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
814 atoms, 814 bonds, 108 residues, 1 model selected
> transparency (#!2 & sel) 60
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select clear
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select clear
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select clear
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> save D:/inter_anscse.cxs
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> save D:/anscse25.cxs
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select clear
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
> select ::name="017"
38 atoms, 41 bonds, 1 residue, 1 model selected
> ui tool show "Color Actions"
> color sel deep sky blue
> color sel byhetero
> select clear
> select /B:19@CG
1 atom, 1 residue, 1 model selected
> select clear
> select protein
1520 atoms, 1546 bonds, 198 residues, 1 model selected
> select /A
798 atoms, 814 bonds, 100 residues, 1 model selected
> cartoon style (#!2 & sel) xsection rectangle modeHelix default
> cartoon style (#!2 & sel & coil) xsection oval
> cartoon style (#!2 & sel) xsection barbell modeHelix default
> cartoon style (#!2 & sel) modeHelix tube sides 20
> cartoon style (#!2 & sel) xsection oval modeHelix default
> save D:/anscse25.cxs
——— End of log from Thu Jun 2 22:18:28 2022 ———
opened ChimeraX session
> select clear
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34,32,67,69
814 atoms, 814 bonds, 108 residues, 1 model selected
> transparency (#!2 & sel) 80
> select clear
> select
> :53,52,54,47,48,50,51,49,80,81,82,83,84,79,85,86,87,88,90,91,92,93,94,95,96,97,98,99,30,29,28,27,25,24,23,22,21,11,12,10,9,8,7,6,5,4,3,2,1,26,47,30,34,32,67,69
814 atoms, 814 bonds, 108 residues, 1 model selected
> transparency (#!2 & sel) 70
> select clear
> save D:/an_1.tif width 1342 height 785 supersample 3
> save D:/anscse25.cxs
——— End of log from Thu Jun 2 22:22:36 2022 ———
opened ChimeraX session
> save C:/Users/Acer/Desktop/an1.tif width 1342 height 785 supersample 3
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 308, in _command_started_cb
self.history_dialog.add(self._just_typed_command or cmd_text,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 406, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
OSError: [Errno 28] No space left on device
Error processing trigger "command started":
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\json\\__init__.py", line 180, in
dump
fp.write(chunk)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\run.py", line 36, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 87, in provider_save
provider_info.bundle_info.run_provider(session, provider_info.format_name,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\image_formats\\__init__.py", line 45, in save
save_image(session, path, format_name, **kw)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\image_formats\save.py", line 123, in save_image
i.save(path, format_name, **metadata)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\PIL\Image.py",
line 2158, in save
save_handler(self, fp, filename)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\PIL\TiffImagePlugin.py", line 1606, in _save
ImageFile._save(
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\PIL\ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\PIL\ImageFile.py",
line 538, in _save
s = e.encode_to_file(fh, bufsize)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 461.79
OpenGL renderer: GeForce RTX 3060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Acer
Model: Nitro AN515-45
OS: Microsoft Windows 10 Home Single Language (Build 19044)
Memory: 16,487,870,464
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5800H with Radeon Graphics
OSLanguage: en-US
Locale: ('en_GB', 'cp874')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pywin32: 228
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → No space left on device |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | accepted → closed |
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