![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7005 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19044
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
in\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e.
3\biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xr8001010eu
npWindows fatal exception: ycode 0x.8001010ep
y"Windows fatal exception: , line code 0x1978001010e in
_rWindows fatal exception: ucode 0xn8001010e_
moWindows fatal exception: dcode 0xu8001010el
e_Windows fatal exception: acode 0xs8001010e_
main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "Windows fatal exception: Windows fatal exception: Ccode 0xcode 0x:8001010e\P8001010er
og
Windows fatal exception: rcode 0xaWindows fatal exception: 8001010ecode 0x
8001010e
mWindows fatal exception: code 0xF8001010eWindows fatal exception: i
code 0xlWindows fatal exception: 8001010ecode 0x
8001010e
Windows fatal exception: ecode 0xsWindows fatal exception: \Windows fatal exception: Ccode 0xh8001010ei8001010em
erWindows fatal exception: acode 0xWindows fatal exception: X8001010ecode 0xcode 0x
8001010e8001010e
Windows fatal exception:
1Windows fatal exception: code 0x.code 0x3Windows fatal exception: 8001010ecode 0x
\8001010eb
8001010ei
nWindows fatal exception: \code 0xl8001010eWindows fatal exception: icode 0xb
Windows fatal exception: \code 0xWindows fatal exception: 8001010ecode 0x8001010e8001010e
s
iWindows fatal exception:
tcode 0xe8001010e-
Windows fatal exception: pcode 0xa8001010ec
kaWindows fatal exception: Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
code 0xWindows fatal exception: 8001010egcode 0xe8001010es
\Windows fatal exception: Windows fatal exception: Windows fatal exception: code 0xcode 0xcode 0x8001010e8001010ec
h8001010e
i
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010em8001010e
erWindows fatal exception: aWindows fatal exception: xcode 0x\code 0xo8001010ep
en_8001010ec
oWindows fatal exception: mWindows fatal exception: code 0xcode 0xm8001010ea8001010e
n
dWindows fatal exception: \code 0xWindows fatal exception: 8001010ecode 0x
8001010ed
iWindows fatal exception: acode 0xWindows fatal exception: l8001010ecode 0x
o8001010eg
.Windows fatal exception: pcode 0xWindows fatal exception: ycode 0x8001010eWindows fatal exception: 8001010ecode 0x
8001010e
"
Windows fatal exception: , line code 0x1358001010e in
shWindows fatal exception: ocode 0xWindows fatal exception: 8001010ecode 0xWindows fatal exception: 8001010ecode 0xw
8001010e_
oWindows fatal exception: pWindows fatal exception: code 0xeWindows fatal exception: ncode 0x_code 0xf8001010ei
l8001010ee
8001010e_
Windows fatal exception: Windows fatal exception: code 0xd8001010ei
aWindows fatal exception: Windows fatal exception: code 0xl8001010ecode 0x
8001010eo
Windows fatal exception: gWindows fatal exception: code 0xcode 0xcode 0x
8001010e8001010e
File
8001010e"Windows fatal exception: C
Windows fatal exception: code 0x:Windows fatal exception: code 0x8001010ecode 0x
8001010e8001010e\
Windows fatal exception:
Windows fatal exception: code 0xcode 0x8001010e8001010eP
rog
ramWindows fatal exception: Windows fatal exception: Fcode 0xiWindows fatal exception: lcode 0xe8001010es
8001010e\
ChimWindows fatal exception: ecode 0xrWindows fatal exception: 8001010ecode 0xcode 0x8001010ea8001010eX
1
Windows fatal exception: .Windows fatal exception: 3code 0xWindows fatal exception: 8001010e\code 0xb
i8001010enWindows fatal exception: \
lcode 0xi8001010ebWindows fatal exception: \
code 0xWindows fatal exception: scode 0xcode 0xi8001010et8001010e
e-pWindows fatal exception: Windows fatal exception: 8001010eacode 0x
8001010eccode 0x
8001010ekWindows fatal exception:
code 0xa8001010egWindows fatal exception: eWindows fatal exception: code 0xscode 0x\8001010e
c8001010ehWindows fatal exception:
code 0xi8001010emWindows fatal exception:
ecode 0xr8001010eaWindows fatal exception: Windows fatal exception:
code 0xcode 0x8001010e8001010e
x\Windows fatal exception: oWindows fatal exception: code 0xcode 0x8001010eWindows fatal exception: 8001010ecode 0x
pWindows fatal exception: ecode 0x8001010e8001010en
_
Windows fatal exception: ccode 0xoWindows fatal exception: mcode 0xm8001010ea8001010e
n
d\Windows fatal exception: dcode 0xi8001010ea
loWindows fatal exception: gcode 0x.8001010ep
y"Windows fatal exception: , line code 0x1078001010e in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_diaWindows fatal exception: lcode 0xo8001010eg
File "CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ib\site-packages\chimerax\opWindows fatal exception: ecode 0xn8001010e_
comWindows fatal exception: mcode 0xa8001010en
d\dWindows fatal exception: icode 0xa8001010el
ogWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 107code 0x in 8001010eWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogram Files\ChimeraX 1.3\binWindows fatal exception: \code 0xl8001010ei
b\siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010ec
hiWindows fatal exception: mcode 0xe8001010er
axWindows fatal exception: \code 0xu8001010ei
\gWindows fatal exception: ucode 0xi8001010e.
pyWindows fatal exception: "code 0x, line 8001010e301
in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\libWindows fatal exception: \code 0xs8001010ei
te-pWindows fatal exception: acode 0xc8001010ek
ageWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: _code 0xm8001010ea
inWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 867code 0x in 8001010ei
niWindows fatal exception: tcode 0x
8001010e File
"C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
Windows fatal exception: File code 0x"8001010eC
:\ProWindows fatal exception: gcode 0xr8001010ea
m FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xs8001010ei
te-packages\chimerax\open_cWindows fatal exception: ocode 0xm8001010em
and\Windows fatal exception: dcode 0xi8001010ea
logWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 107code 0x in 8001010eWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packWindows fatal exception: acode 0xg8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e_
maWindows fatal exception: icode 0xn8001010e.
pyWindows fatal exception: "code 0x, line 8001010e867
in iWindows fatal exception: ncode 0xi8001010et
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
ram Files\ChimeraX 1.3\bin\lib\Windows fatal exception: scode 0xi8001010et
e-pWindows fatal exception: acode 0xc8001010ek
agWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x_8001010em
aiWindows fatal exception: ncode 0x.8001010ep
y"Windows fatal exception: , line code 0x10188001010e in
File "C:\Program Files\ChimerWindows fatal exception: acode 0xX8001010e
1.3Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\rWindows fatal exception: ucode 0xn8001010ep
y.Windows fatal exception: pcode 0xy8001010e"
, line 87Windows fatal exception: in code 0x_8001010er
unWindows fatal exception: _code 0xc8001010eo
deWindows fatal exception:
code 0x File 8001010e"
C:\Program Files\ChimeraX 1.3\bin\libWindows fatal exception: \code 0xr8001010eu
npyWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 197code 0x in 8001010e_
ruWindows fatal exception: ncode 0x_8001010em
odWindows fatal exception: ucode 0xl8001010ee
_aWindows fatal exception: scode 0x_8001010em
aiWindows fatal exception: ncode 0x
8001010e
Thread 0xWindows fatal exception: 00003e14code 0x (most recent call first):
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
eWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
sWindows fatal exception: \Windows fatal exception: code 0xcode 0x8001010eC
h8001010eWindows fatal exception:
code 0xiWindows fatal exception: mcode 0x8001010ee8001010e
r
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
ges\chimerax\open_coWindows fatal exception: mcode 0xm8001010ea
nd\Windows fatal exception: dcode 0xi8001010ea
logWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 135code 0x in 8001010es
hoWindows fatal exception: wcode 0x_8001010eo
peWindows fatal exception: ncode 0x_8001010ef
ilWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
e_dialog
File "CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: scode 0xi8001010et
e-packages\chimerax\open_coWindows fatal exception: mcode 0xm8001010ea
nd\Windows fatal exception: dcode 0xi8001010ea
logWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 107code 0x in 8001010eWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
Files\ChimeraX 1.3\bin\lib\Windows fatal exception: scode 0xi8001010et
e-pWindows fatal exception: acode 0xc8001010ek
agWindows fatal exception: ecode 0xs8001010e\
chWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: xcode 0x\8001010eu
i\Windows fatal exception: gcode 0xu8001010ei
.pWindows fatal exception: ycode 0x"8001010e, line
301 in Windows fatal exception: ecode 0xv8001010ee
nt_loop
File "C:\Program Files\ChWindows fatal exception: icode 0xm8001010ee
raXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aX_main.py", line 867 in init
File "C:\ProgramWindows fatal exception: code 0xF8001010ei
lesWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
acWindows fatal exception: kcode 0xa8001010eg
es\ChimeraX_main.py", line 1018 in code 0x
8001010e File
"C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packagWindows fatal exception: ecode 0xs8001010e\
chiWindows fatal exception: mcode 0xe8001010er
axWindows fatal exception: \code 0xo8001010ep
enWindows fatal exception: _code 0xc8001010eo
mmWindows fatal exception: acode 0xn8001010ed
\dWindows fatal exception: icode 0xa8001010el
ogWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 135code 0x in 8001010es
how_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program FilWindows fatal exception: ecode 0xs8001010e\
ChimWindows fatal exception: ecode 0xr8001010ea
X 1Windows fatal exception: .code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xs8001010ei
teWindows fatal exception: -code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: ccode 0xh8001010ei
merax\open_command\dWindows fatal exception: icode 0xa8001010el
og.Windows fatal exception: pcode 0xy8001010e"
, line 107Windows fatal exception: in code 0x
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\ChimeraX 1.3\bin\lib\site-packaWindows fatal exception: gcode 0xe8001010es
\chWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: xcode 0x\8001010eu
i\Windows fatal exception: gcode 0xu8001010ei
.pWindows fatal exception: ycode 0x"8001010e, line
301 in Windows fatal exception: ecode 0xv8001010ee
ntWindows fatal exception: _code 0xl8001010eo
opWindows fatal exception:
code 0x File 8001010e"C
:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraWindows fatal exception: Xcode 0x_8001010em
ainWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 1018code 0x in 8001010eWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in sWindows fatal exception: hcode 0xo8001010ew
_openWindows fatal exception: _code 0xf8001010ei
le_Windows fatal exception: dcode 0xi8001010ea
logWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meraX 1.3\bin\lib\site-packages\chimerax\open_commanWindows fatal exception: dcode 0x\8001010ed
ialoWindows fatal exception: gcode 0x.8001010ep
y", line Windows fatal exception: 107code 0x in 8001010e
code 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
es\ChimeraX 1.3\bin\lib\site-packagesWindows fatal exception: \code 0xc8001010eh
imeWindows fatal exception: rcode 0xa8001010ex
\uWindows fatal exception: icode 0x\8001010eg
uiWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 301code 0x in 8001010ee
veWindows fatal exception: ncode 0xt8001010e_
loWindows fatal exception: ocode 0xp8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
Program Files\ChimeraX 1.3\binWindows fatal exception: \code 0xl8001010ei
b\sWindows fatal exception: icode 0xt8001010ee
-pWindows fatal exception: acode 0xc8001010ek
agWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x_8001010em
aiWindows fatal exception: ncode 0x.8001010ep
y"Windows fatal exception: , line code 0x8678001010e in
init
File "C:\Program Files\ChimeraX 1.3\Windows fatal exception: bcode 0xi8001010en
\liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
acWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X_mWindows fatal exception: acode 0xi8001010en
.py", line Windows fatal exception: 1018code 0x in 8001010eWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.pyWindows fatal exception: "code 0x, line 8001010e197
in _rWindows fatal exception: ucode 0xn8001010e_
modWindows fatal exception: ucode 0xl8001010ee
_aWindows fatal exception: scode 0x_8001010em
aiWindows fatal exception: ncode 0x
8001010e
Thread 0x00003e14Windows fatal exception: (most recent call first):
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eWindows fatal exception:
Xcode 0xWindows fatal exception: 8001010ecode 0x18001010e.
3\
bin\Windows fatal exception: lcode 0xi8001010eb
\sWindows fatal exception: icode 0xt8001010ee
-pWindows fatal exception: acode 0xc8001010ek
agWindows fatal exception: ecode 0xs8001010e\
chWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: xcode 0x\8001010eo
peWindows fatal exception: ncode 0x_8001010ec
ommand\dialog.py", line 135 in show_open_Windows fatal exception: fcode 0xi8001010el
e_dWindows fatal exception: icode 0xa8001010el
og
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.3\bin\lib\site-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0xs8001010e\
chWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: xcode 0x\8001010eo
peWindows fatal exception: ncode 0x_8001010ec
omWindows fatal exception: mcode 0xa8001010en
d\Windows fatal exception: dcode 0xi8001010ea
loWindows fatal exception: gcode 0x.8001010ep
y", line 107 in
File "C:\Program Files\ChimeraX 1.3\bWindows fatal exception: icode 0xn8001010e\
libWindows fatal exception: \code 0xs8001010ei
te-Windows fatal exception: pcode 0xa8001010ec
kaWindows fatal exception: gcode 0xe8001010es
\cWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xx8001010e\
uiWindows fatal exception: \code 0xg8001010eu
i.Windows fatal exception: pcode 0xy8001010e"
, line 301 in event_loop
File "C:\PWindows fatal exception: rcode 0xo8001010eg
ramWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xin8001010e\
liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
ackages\ChimeraX_main.py", line 867 in init
File "C:\ProWindows fatal exception: gcode 0xr8001010ea
m FWindows fatal exception: icode 0xl8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: scode 0xi8001010et
e-Windows fatal exception: pcode 0xa8001010ec
kages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packagWindows fatal exception: ecode 0xs8001010e\
chimeWindows fatal exception: rcode 0xa8001010ex
\opWindows fatal exception: ecode 0xn8001010e_
coWindows fatal exception: mcode 0xm8001010ea
ndWindows fatal exception: \code 0xd8001010ei
alWindows fatal exception: ocode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e107
in
File "C:\ProgrWindows fatal exception: acode 0xm8001010e
FilWindows fatal exception: ecode 0xs8001010e\
ChiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
ges\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Windows fatal exception: Pcode 0xr8001010eo
gramWindows fatal exception: code 0xF8001010ei
lesWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
ackages\ChimeraX_main.py", line 867 in Windows fatal exception: icode 0xn8001010ei
t
File Windows fatal exception: "code 0xC8001010e:
\PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\lib\site-packages\ChimeraX_maWindows fatal exception: icode 0xn8001010e.
py"Windows fatal exception: , line code 0x10188001010e in
Windows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meraX 1.3\bin\lib\runpy.py", line 87 in Windows fatal exception: _code 0xr8001010eu
n_cWindows fatal exception: ocode 0xd8001010ee
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
raWindows fatal exception: mcode 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: scode 0xi8001010et
e-packages\chimerax\opWindows fatal exception: ecode 0xn8001010e_
comWindows fatal exception: mcode 0xa8001010end
\dWindows fatal exception: icode 0xa8001010el
ogWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 135code 0x in 8001010es
hoWindows fatal exception: wcode 0x_8001010eo
peWindows fatal exception: ncode 0x_8001010ef
ilWindows fatal exception: ecode 0x_8001010ed
iWindows fatal exception: acode 0xl8001010eo
g
File Windows fatal exception: "code 0xC8001010e:
\PrWindows fatal exception: ogcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
lib\site-packages\chimerax\open_command\Windows fatal exception: dcode 0xi8001010ea
logWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 107code 0x in 8001010eWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packagWindows fatal exception: ecode 0xs8001010e\
chimWindows fatal exception: ecode 0xr8001010ea
x\uWindows fatal exception: icode 0x\8001010eg
uiWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 301code 0x in 8001010ee
veWindows fatal exception: ncode 0xt8001010e_
loWindows fatal exception: ocode 0xp8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChiWindows fatal exception: mcode 0xe8001010er
aX Windows fatal exception: 1code 0x.8001010e3
\biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xr8001010eu
npWindows fatal exception: ycode 0x.8001010ep
y"Windows fatal exception: , line code 0x878001010e in
_rWindows fatal exception: ucode 0xn8001010e_
coWindows fatal exception: dcode 0xe8001010e
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_Windows fatal exception: ccode 0xo8001010em
mandWindows fatal exception: \code 0xd8001010ei
alWindows fatal exception: ocode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e135
in sWindows fatal exception: hcode 0xo8001010ew
_oWindows fatal exception: pcode 0xe8001010en
_fWindows fatal exception: icode 0xl8001010ee
_dWindows fatal exception: icode 0xa8001010el
og
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimWindows fatal exception: ecode 0xr8001010ea
X 1Windows fatal exception: .code 0x38001010e\
binWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: scode 0xi8001010et
e-Windows fatal exception: pcode 0xa8001010ec
kaWindows fatal exception: gcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e_
main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in Windows fatal exception: _code 0xr8001010eu
n_codWindows fatal exception: ecode 0x
8001010e File
"C:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
in\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Thread 0x00003e14Windows fatal exception: (most recent call first):
code 0x8001010e File
"Windows fatal exception: Ccode 0x:8001010e\
PWindows fatal exception: rcode 0xo8001010e
gWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0xs8001010e\
ChiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: _code 0xm8001010ea
inWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 867code 0x in 8001010ei
niWindows fatal exception: tcode 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
rogram Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimerWindows fatal exception: acode 0xX8001010e
1.3\Windows fatal exception: bcode 0xi8001010en
\liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
acWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xc8001010eh
imWindows fatal exception: ecode 0xr8001010ea
x\Windows fatal exception: ocode 0xp8001010ee
n_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e.
3\bWindows fatal exception: icode 0xn8001010e\
libWindows fatal exception: \code 0xs8001010ei
teWindows fatal exception: -code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010ex
\uWindows fatal exception: icode 0x\8001010eg
ui.py", line 301 in event_loop
File "C:\ProgramWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
ges\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0xWindows fatal exception: 00003e14code 0x (most recent call first):
8001010e File
"C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0x8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: \code 0xb8001010ei
n\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\Windows fatal exception: lcode 0xi8001010eb
\siWindows fatal exception: tcode 0xe8001010e-
pacWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xc8001010eh
imWindows fatal exception: ecode 0xr8001010ea
x\Windows fatal exception: ocode 0xp8001010ee
n_Windows fatal exception: ccode 0xo8001010em
maWindows fatal exception: ncode 0xd8001010e\
dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packagesWindows fatal exception: \code 0xc8001010eh
imeWindows fatal exception: rcode 0xa8001010ex
\uiWindows fatal exception: \code 0xg8001010eu
i.Windows fatal exception: pcode 0xy8001010e"
, line 301Windows fatal exception: in code 0xe8001010ev
enWindows fatal exception: tcode 0x_8001010el
ooWindows fatal exception: pcode 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
rogram Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraWindows fatal exception: Xcode 0x_8001010em
ainWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 867code 0x in 8001010ei
niWindows fatal exception: tcode 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in code 0x
8001010e File
"C:\ProWindows fatal exception: grcode 0xa8001010em
FileWindows fatal exception: s\code 0xC8001010eh
imerWindows fatal exception: acode 0xX 8001010e1
.3\bWindows fatal exception: icode 0xn8001010e\
lib\Windows fatal exception: rcode 0xu8001010en
py.pWindows fatal exception: ycode 0x"8001010e, line
87 in _rWindows fatal exception: ucode 0xn8001010e_
code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003e14 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py", line 494 in mouse_pause_tracking
Windows fatal exception: access violation
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\\\Project Kun_BEZ
> md\\\0_TcdB_1_Bez\\\4.Analyze\\\hbond_40\\\1_oct8\\\interacting_H1.cxs"
Log from Wed Jun 1 14:06:17 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\\\Project Kun_BEZ
> md\\\0_TcdB_1_Bez\\\4.Analyze\\\hbond_40\\\1_oct8\\\interacting.cxs"
Log from Wed Jun 1 13:35:48 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\Project Kun_BEZ
> md\0_TcdB_1_Bez\4.Analyze\hbond_40\1_oct8\interacting.cxs" format session
Log from Wed Jun 1 11:48:35 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\\\Project Kun_BEZ
> md\\\0_TcdB_1_Bez\\\4.Analyze\\\hbond_40\\\1_oct8\\\interacting.cxs"
Log from Tue May 31 23:08:22 2022 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/clustered.pdb"
Chain information for clustered.pdb #1
---
Chain | Description
? | No description available
> select /?
17237 atoms, 17461 bonds, 1139 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain /?
Alignment identifier is 1/
> show target m
> hide target m
[Repeated 1 time(s)]
> show target m
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-93
1413 atoms, 1432 bonds, 93 residues, 1 model selected
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:481
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /*:481-491
191 atoms, 191 bonds, 11 residues, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:481-491
191 atoms, 191 bonds, 11 residues, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:492
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /*:492-493
29 atoms, 27 bonds, 2 residues, 1 model selected
> select /*:437
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /*:437
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /*:481-491
191 atoms, 191 bonds, 11 residues, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:1-488
7433 atoms, 7540 bonds, 488 residues, 1 model selected
> select /*:1-492
7496 atoms, 7604 bonds, 492 residues, 1 model selected
> select ~sel
9741 atoms, 9857 bonds, 647 residues, 1 model selected
> hide sel cartoons
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272
17 atoms, 16 bonds, 1 residue, 1 model selected
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> select /*:491
22 atoms, 21 bonds, 1 residue, 1 model selected
> select /*:491-492
34 atoms, 33 bonds, 2 residues, 1 model selected
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272
17 atoms, 16 bonds, 1 residue, 1 model selected
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> set bgColor white
> set bgColor black
> set bgColor white
> set bgColor black
> lighting simple
> lighting soft
> lighting full
> lighting simple
> lighting soft
> lighting full
> lighting simple
> lighting flat
> lighting shadows true intensity 0.5
> lighting simple
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> set bgColor white
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting flat
[Repeated 1 time(s)]
> lighting full
> lighting soft
> lighting simple
> graphics silhouettes false
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting simple
> graphics silhouettes false
> lighting shadows true
> lighting shadows false
> set bgColor gray
> set bgColor white
> set bgColor gray
> set bgColor white
> set bgColor gray
> set bgColor white
> cartoon style sel xsection oval modeHelix default
> cartoon style sel xsection rectangle modeHelix default
> cartoon style (sel & coil) xsection oval
> cartoon style sel xsection barbell modeHelix default
> cartoon style sel modeHelix tube sides 20
> cartoon style sel xsection oval modeHelix default
> cartoon style sel xsection rectangle modeHelix default
> cartoon style sel xsection oval modeHelix default
> graphics silhouettes true
> graphics silhouettes false
> undo
[Repeated 9 time(s)]
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.
> color sel bypolymer
> rainbow sel
> color bfactor sel
4197 atoms, 271 residues, atom bfactor range 0 to 0
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? CYX 514 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
[Repeated 3 time(s)]Skipping possible acceptor with bad geometry: /? CYX 949
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
[Repeated 2 time(s)]Skipping possible acceptor with bad geometry: /? CYX 514
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
Skipping possible acceptor with bad geometry: /? CYX 949 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
Skipped 9 atom(s) with bad connectivities; see log for details
246 hydrogen bonds found
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? CYX 514 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
[Repeated 3 time(s)]Skipping possible acceptor with bad geometry: /? CYX 949
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
[Repeated 2 time(s)]Skipping possible acceptor with bad geometry: /? CYX 514
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
Skipping possible acceptor with bad geometry: /? CYX 949 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
Skipped 9 atom(s) with bad connectivities; see log for details
246 hydrogen bonds found
> ~hbonds
[Repeated 1 time(s)]
> hide sel atoms
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> hide sel atoms
> select /?
17237 atoms, 17461 bonds, 1 pseudobond, 1139 residues, 2 models selected
> hide sel atoms
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> ui tool show "Color Actions"
> color sel cornflower blue
> color sel blue
> color sel light sea green
> color sel cyan
> color sel cornflower blue
> color sel medium blue
> color sel cornflower blue
> color sel #00aaffff
> color sel #4393c3ff
> color sel #92c5deff
> color sel #abd9e9ff
> color sel #ffffffff
> color sel #abd9e9ff
> select clear
> color #d73027ff
> color #fdae61ff
> color #ffffffff
> color #fdae61ff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #abd9e9ff
> select clear
> color #d73027ff
> color #fee090ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #abd9e9ff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #fdae61ff
> color sel #abd9e9ff
> color sel #ffffffff
> color sel #abd9e9ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #fdae61ff
> color sel #fee090ff
> color sel #fdae61ff
> color sel #f4a582ff
> color sel #b2182bff
> color sel #ffffffff
> color sel #b2182bff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #abd9e9ff
> color sel #ffffffff
> color sel #2166acff
> color sel #053061ff
> color sel #ffffffff
> color sel #053061ff
> color sel #abd9e9ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #f4a582ff
> select clear
> color sienna
> color coral
> color saddle brown
> color chocolate
> color brown
> color tomato
> color dark salmon
> color salmon
> color dark red
> color crimson
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #abd9e9ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #ffffffff
> color sel #f4a582ff
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
——— End of log from Tue May 31 23:08:22 2022 ———
opened ChimeraX session
> hide sel cartoons
> show sel cartoons
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> ui tool show "Color Actions"
> color sel cyan
> color sel aquamarine
> color sel sky blue
> color sel cyan
> color sel deep sky blue
> color sel royal blue
> color sel dark turquoise
> color sel dark cyan
> color sel cornflower blue
> color sel teal
> color sel steel blue
> color sel sky blue
> color sel light sky blue
> color sel pale turquoise
> color sel powder blue
> color sel medium turquoise
> color sel turquoise
> color sel dark turquoise
> color sel olive drab
> color sel light sea green
> color sel medium turquoise
> color sel turquoise
> color sel medium aquamarine
> color sel teal
> color sel steel blue
> color sel royal blue
> select clear
> color #00aaffff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #ff5500ff
> color sel #ff0000ff
> color sel #ffaa7fff
> color sel #ff0000ff
> color sel #00aaffff
> color sel #058affff
> color sel #0199ffff
> color sel #00aeffff
> color sel #00ddffff
> color sel #00ffccff
> color sel #00ff80ff
> color sel #00ff51ff
> color sel #00ff1eff
> color sel #00ff11ff
> color sel #04ff00ff
> color sel #11ff00ff
> color sel #3cff00ff
> color sel #7bff00ff
> color sel #9dff00ff
> color sel #c8ff00ff
> color sel #eaff00ff
> color sel #f2ff00ff
> color sel #fbff00ff
> color sel #ffff00ff
> color sel #ffee00ff
> color sel #ffc800ff
> color sel #ffbf00ff
> color sel #ffb700ff
> color sel #ff9d00ff
> color sel #ff8c00ff
> color sel #ff8800ff
> color sel #ffffffff
> color sel #ffb701ff
> color sel #ffb700ff
> color sel #ffb300ff
> color sel #ffa200ff
> color sel #ff8c00ff
> color sel #ff6600ff
> color sel #ffffffff
> color sel #0055ffff
> color sel #00aaffff
> color sel #0055ffff
> color sel #ffffffff
> color sel #0055ffff
> color sel #f4a582ff
> color sel #ff6600ff
> color sel #aa0000ff
> color sel #ff6600ff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #0055ffff
> color sel #00aaffff
> select clear
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select clear
> select : 174 176
Expected a keyword
> select : 174,176
37 atoms, 36 bonds, 2 residues, 1 model selected
> select : 174,176,185,198-201
113 atoms, 111 bonds, 7 residues, 1 model selected
> select : 174,176,185,198-201,237,259-260,
Expected an objects specifier or a keyword
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> select : 174,176,185,198-201,237,259-260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 344 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel tube/slab shape box
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel slab
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel tube/slab shape box
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> style sel ringFill thin
Changed 20 residue ring styles
> style sel stick
Changed 344 atom styles
> color sel byhetero
> ui tool show "Color Actions"
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #0055ffff
> color sel byhetero
> select : 303,304,326,328,330,370-373,3750
178 atoms, 178 bonds, 9 residues, 1 model selected
> color sel #aa0000ff
> color sel byhetero
> select H
8421 atoms, 1139 residues, 1 model selected
> hide sel atoms
> show sel atoms
> hide sel atoms
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> ui tool show "Color Actions"
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061ff
> color sel byhetero
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #aaffffff
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061ff
> color sel byhetero
> color sel #d1e5f0ff
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> color sel #f4a582ff
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061ff
> color sel byhetero
> select clear
> color #92c5deff
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select : 174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #053061ff
> color sel byhetero
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> color sel #f4a582ff
> select : ,303,304,326,328,330,370-373,375
Expected an objects specifier or a keyword
> color sel #b2182bff
> color sel #f4a582ff
> select : ,303,304,326,328,330,370-373,375
Expected an objects specifier or a keyword
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> color sel #b2182bff
> color sel #aa0000ff
> color sel #b2182bff
> color sel byhetero
> select clear
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> style sel ringFill thick
Changed 20 residue ring styles
> style sel ringFill off
Changed 20 residue ring styles
> nucleotides sel tube/slab
> nucleotides sel ladder
> style sel sphere
Changed 344 atom styles
> style sel stick
Changed 344 atom styles
> ui tool show "Selection Inspector"
> size =sel stickRadius 0.19
Changed 339 bond radii
> size =sel stickRadius 0.18
Changed 339 bond radii
> size =sel stickRadius 0.17
Changed 339 bond radii
> size =sel stickRadius 0.16
Changed 339 bond radii
> size =sel stickRadius 0.15
Changed 339 bond radii
> size =sel stickRadius 0.14
Changed 339 bond radii
> size =sel stickRadius 0.13
Changed 339 bond radii
> size =sel stickRadius 0.12
Changed 339 bond radii
> size =sel stickRadius 0.11
Changed 339 bond radii
> size =sel stickRadius 0.1
Changed 339 bond radii
> setattr =sel b halfbond false
Assigning halfbond attribute to 339 items
> setattr =sel b halfbond true
Assigning halfbond attribute to 339 items
> setattr =sel b halfbond false
Assigning halfbond attribute to 339 items
> setattr =sel b halfbond true
Assigning halfbond attribute to 339 items
> setattr =sel b display false
Assigning display attribute to 339 items
> setattr =sel b display true
Assigning display attribute to 339 items
> setattr sel r thin_rings true
Assigning thin_rings attribute to 20 items
> setattr sel r ring_display true
Assigning ring_display attribute to 20 items
> cartoon hide sel
> cartoon sel
> cartoon hide sel
> cartoon sel
> select clear
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> setattr sel r ring_display false
Assigning ring_display attribute to 20 items
> setattr sel structures autochain false
Assigning autochain attribute to 1 item
> setattr sel structures autochain true
Assigning autochain attribute to 1 item
> size =sel stickRadius 0.11
Changed 339 bond radii
> size =sel stickRadius 0.12
Changed 339 bond radii
> size =sel stickRadius 0.13
Changed 339 bond radii
> size =sel stickRadius 0.14
Changed 339 bond radii
> size =sel stickRadius 0.13
Changed 339 bond radii
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> setattr sel r phi -2.14748e+09
Assigning phi attribute to 271 items
Cannot set attribute 'phi' to '-2.14748e+09'
> setattr sel r phi -2.14748e+09
Assigning phi attribute to 271 items
Cannot set attribute 'phi' to '-2.14748e+09'
> cartoon hide sel
> cartoon sel
> setattr sel r ribbon_hide_backbone false
Assigning ribbon_hide_backbone attribute to 271 items
> setattr sel r ribbon_hide_backbone true
Assigning ribbon_hide_backbone attribute to 271 items
> setattr sel r ribbon_hide_backbone false
Assigning ribbon_hide_backbone attribute to 271 items
> setattr sel r ribbon_hide_backbone true
Assigning ribbon_hide_backbone attribute to 271 items
> size sel ballScale 0.24
Changed 1 ball scales
> size sel ballScale 0.23
Changed 1 ball scales
> size sel ballScale 0.22
Changed 1 ball scales
> size sel ballScale 0.21
Changed 1 ball scales
> size sel ballScale 0.2
Changed 1 ball scales
> size sel ballScale 0.19
Changed 1 ball scales
> size sel ballScale 0.18
Changed 1 ball scales
> size sel ballScale 0.17
Changed 1 ball scales
> size sel ballScale 0.16
Changed 1 ball scales
> size sel ballScale 0.15
Changed 1 ball scales
> size sel ballScale 0.14
Changed 1 ball scales
> size sel ballScale 0.13
Changed 1 ball scales
> size sel ballScale 0.12
Changed 1 ball scales
> size sel ballScale 0.11
Changed 1 ball scales
> size sel ballScale 0.1
Changed 1 ball scales
> size sel ballScale 0.09
Changed 1 ball scales
> size sel ballScale 0.08
Changed 1 ball scales
> size sel ballScale 0.07
Changed 1 ball scales
> size sel ballScale 0.06
Changed 1 ball scales
> size sel ballScale 0.05
Changed 1 ball scales
> size sel ballScale 0.04
Changed 1 ball scales
> size sel ballScale 0.05
Changed 1 ball scales
> size sel ballScale 0.06
Changed 1 ball scales
> size sel ballScale 0.07
Changed 1 ball scales
> size sel ballScale 0.08
Changed 1 ball scales
> size sel ballScale 0.09
Changed 1 ball scales
> size sel ballScale 0.1
Changed 1 ball scales
> size sel ballScale 0.11
Changed 1 ball scales
> size sel ballScale 0.12
Changed 1 ball scales
> size sel ballScale 0.13
Changed 1 ball scales
> size sel ballScale 0.14
Changed 1 ball scales
> size sel ballScale 0.15
Changed 1 ball scales
> size sel ballScale 0.16
Changed 1 ball scales
> size sel ballScale 0.17
Changed 1 ball scales
> size sel ballScale 0.18
Changed 1 ball scales
> size sel ballScale 0.19
Changed 1 ball scales
> size sel ballScale 0.2
Changed 1 ball scales
> size sel ballScale 0.21
Changed 1 ball scales
> size sel ballScale 0.22
Changed 1 ball scales
> size sel ballScale 0.23
Changed 1 ball scales
> size sel ballScale 0.24
Changed 1 ball scales
> size sel ballScale 0.25
Changed 1 ball scales
> setattr sel struct display false
Assigning display attribute to 1 item
> setattr sel struct display true
Assigning display attribute to 1 item
> setattr sel structures autochain false
Assigning autochain attribute to 1 item
> setattr sel structures autochain true
Assigning autochain attribute to 1 item
> ui tool show "Selection Inspector"
> setattr sel a occupancy 0.9
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.8
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.7
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.6
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.5
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.4
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.3
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.2
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.1
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.1
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.2
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.3
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.4
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.5
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.6
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.7
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.8
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.9
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 1
Assigning occupancy attribute to 4197 items
> select clear
> graphics silhouettes true
> graphics silhouettes false
> lighting flat
[Repeated 1 time(s)]
> lighting soft
> lighting simple
> lighting flat
[Repeated 1 time(s)]
> lighting simple
> lighting soft
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> graphics silhouettes true
> graphics silhouettes false
> lighting soft
> lighting flat
> graphics silhouettes false
> lighting simple
> graphics silhouettes true
> graphics silhouettes false
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> view
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
——— End of log from Wed Jun 1 11:48:35 2022 ———
opened ChimeraX session
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select ~sel
16893 atoms, 17122 bonds, 1119 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #b2182bfe
> color sel #b2182bfd
> color sel #b2182bfc
> color sel #b2182bfb
> color sel #b2182bfa
> color sel #b2182bf9
> color sel #b2182bf8
> color sel #b2182bf7
> color sel #b2182bf6
> color sel #b2182bf5
> color sel #b2182b02
> color sel #b2182b19
> color sel #b2182bfa
> color sel #b2182b19
> color sel #b2182bfa
> color sel #b2182b19
> color sel #b2182b02
> color sel #b2182b14
> color sel #b2182bc8
> color sel #b2182b14
> color sel #b2182b02
> color sel #b2182b01
> color sel #b2182b0f
> color sel #b2182b96
> color sel #b2182b0f
> color sel #b2182b01
> color sel #b2182b05
> color sel #b2182b32
> color sel #b2182b05
> color sel #b2182b01
> color sel #b2182b0a
> color sel #b2182b64
> color sel #b2182b0a
> color sel #b2182b01
> color sel #b2182b05
> color sel #b2182b32
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #f4a58232
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> color sel #b2182b32
> color sel #f4a58232
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #92c5de32
> select : 174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #0055ff32
> color sel #0055ff02
> color sel #0055ff19
> color sel #0055fffa
> color sel #053061fa
> color sel byhetero
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> color sel #b2182bfa
> color sel byhetero
> select clear
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui mousemode right label
[Repeated 1 time(s)]
> label sel attribute name
> label sel attribute label_one_letter_code
> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select text "/{0.chain_id} {0.label_one_letter_code} {0.number}{
> 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375}"
Expected an objects specifier or a keyword
> select "/{0.chain_id} {0.label_one_letter_code} {0.number}{
> 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375}"
Expected an objects specifier or a keyword
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui mousemode right label
> label sel text "/{0.chain_id} {0.name} {0.number}{0.insertion_code}"
> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> ui tool show "Selection Inspector"
> label sel text 424
> label 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> label 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> label sel attribute label_one_letter_code
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> label_one_letter_code
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> [label_one_letter_code]
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> attribute label _one_letter_code
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> attribute label
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> attribute label {0.chain_id}
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> residues attribute {0.chain_id}
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> residues text {0.chain_id}
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "/{0.chain_id} {0.label_one_letter_code} {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "/{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
> ui tool show "Color Actions"
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "{0.label_one_letter_code}{0.number}{0.insertion_code}"
Expected a keyword
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select :174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061fa
> color sel byhetero
> color sel #b2182bfa
> color sel #053061fa
> color sel byhetero
> color sel brown target l
> color sel indian red target l
> color sel spring green target l
> color sel blue target l
> select :303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> color sel red target l
> color sel fire brick target l
> color sel maroon target l
> color sel dark red target l
> color sel crimson target l
> color sel orange red target l
> color sel coral target l
> color sel indian red target l
> color sel dark red target l
> color sel orange red target l
> color sel yellow target l
> ui mousemode right label
> ui mousemode right distance
> ui mousemode right label
> select clear
> ui mousemode right label
> ui mousemode right select
> ui mousemode right label
> label delete residues
[Repeated 1 time(s)]
> label (#1::chain_id=' '&:303)
> label delete residues
> undo
[Repeated 4 time(s)]
> select clear
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
> select clear
[Repeated 2 time(s)]
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui tool show "Color Actions"
> select : 174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel blue
> color sel royal blue
> color sel deep sky blue
> color sel blue
> color sel midnight blue
> color sel sky blue
> color sel dodger blue
> color sel medium blue
> color sel blue
> color sel medium blue
> color sel #0000fffa
> color sel #00007ffa
> color sel #5500fffa
> color sel #5555fffa
> color sel #0055fffa
> color sel #0055ff01
> color sel #0055ff0a
> color sel #0055ff64
> color sel #0055ff02
> color sel #0055ff19
> color sel #0055fffa
> color sel #0000fffa
> color sel #aaaa7ffa
> color sel #00007ffa
> color sel #00007f05
> color sel #00007f32
> color sel lime target ac
> color sel cyan target a
> color sel cornflower blue target a
> color sel blue target a
> color sel #00007f02
> color sel #00007f19
> color sel #00007ffa
> color sel #0000fffa
> color sel byhetero
> color sel #053061fa
> color sel #00007ffa
> color sel byhetero
> select clear
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ~label sel residues
> select clear
> lighting full
> graphics silhouettes false
> lighting simple
> lighting full
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #aa0000fa
> color sel byhetero
> color sel #b2182bfa
> color sel byhetero
> color sel #aa0000fa
> color sel byhetero
> color sel #a80000fa
> color sel #a60000fa
> color sel #9d0000fa
> color sel #990000fa
> color sel #960000fa
> color sel byhetero
> color sel #980000fa
> color sel #960000fa
> color sel #940000fa
> color sel #930000fa
> color sel byhetero
> select clear
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> lighting soft
> graphics silhouettes true
> graphics silhouettes false
> lighting full
> lighting simple
> lighting full
> lighting simple
> lighting full
> graphics silhouettes true
> graphics silhouettes false
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> set bgColor gray
> set bgColor black
> set bgColor white
> volume appearance airways
No volumes specified
> volume showOutlineBox true
No volumes specified
> volume region all imageMode "full region"
No volumes specified
> volume planes z style image imageMode "full region"
No volumes specified
> save C:\Users\User\Desktop\image1.png supersample 3
> volume showOutlineBox true
No volumes specified
> volume region all imageMode "full region"
No volumes specified
> view
> ui tool show "Side View"
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> view sel
> select clear
> label delete residues
[Repeated 2 time(s)]
> ui mousemode right select
Drag select of 3 atoms, 3 bonds
> select clear
[Repeated 3 time(s)]Drag select of 87 atoms, 54 residues, 76 bonds
> select clear
> ui mousemode right translate
> ui mousemode right label
> label (#1::chain_id=' '&:304)
> label delete residues
> label (#1::chain_id=' '&:304)
> ui mousemode right "move label"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
[Repeated 1 time(s)]
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui tool show "Color Actions"
> color sel blue target l
> select :174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel medium blue target l
> color sel blue target l
> color sel midnight blue target l
> color sel blue target l
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 45
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 60
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 90
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 500
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 1
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 5
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 1
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.9
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 10 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 90 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 24 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 25 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 15 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 24 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 40 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 24 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> bold
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> bold true
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 26 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 28 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 36 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 34 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 33 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 32 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select :304,326,328,330,370-373,375
171 atoms, 169 bonds, 9 residues, 1 model selected
> color sel red target l
> color sel tomato target l
> color sel crimson target l
> color sel maroon target l
> color sel red target l
> ui mousemode right "move label"
> select :303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel red target l
> select clear
[Repeated 1 time(s)]
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> ui mousemode right select
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select /?:260@OD1
1 atom, 1 residue, 1 model selected
> select add /?:303@OH
2 atoms, 2 residues, 1 model selected
> ui mousemode right distance
> distance /?:303@OH /?:303@CD1
Distance between /? TYR 303 OH and CD1: 3.688Å
> ~distance /?:303@OH /?:303@CD1
> distance /?:303@CD1 /?:260@OD1
Distance between /? TYR 303 CD1 and ASP 260 OD1: 5.811Å
> ~distance /?:303@CD1 /?:260@OD1
> select clear
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select add /?:260@OD1
2 atoms, 2 residues, 1 model selected
> ui mousemode right "link markers"
> ui mousemode right "mark point"
> marker #2 position 66.81,104.2,81.93 color yellow radius 1
> marker #2 position 66.86,103.9,81.8 color yellow radius 1
> marker #2 position 69.84,95.07,77.69 color yellow radius 1
> undo
[Repeated 1 time(s)]
> ui mousemode right "delete markers"
> marker delete #2:3
> marker delete #2:2
> marker delete #2:1
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> ui tool show Distances
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select /?:260@OD1
1 atom, 1 residue, 1 model selected
> select add /?:303@OH
2 atoms, 2 residues, 1 model selected
> ~select #2
2 atoms, 2 residues, 1 model selected
> select #2
Nothing selected
> hide #2 models
> show #2 models
> close #3
> close #2
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select add /?:260@OD2
2 atoms, 2 residues, 1 model selected
> distance /?:303@OH /?:260@OD2
Distance between /? TYR 303 OH and ASP 260 OD2: 2.644Å
> distance style symbol false
> distance style symbol true
> distance style decimalPlaces 2
> distance style decimalPlaces 1
> distance style decimalPlaces 0
> distance style decimalPlaces -1
Invalid "decimalPlaces" argument: Must be greater than or equal to 0
> distance style decimalPlaces 0
Must select one or more distances in the table
> ~distance /?:303@OH /?:260@OD2
> select clear
> ui tool show Contacts
> toolshed show
> select /?:371@NH2
1 atom, 1 residue, 1 model selected
> select add /?:259@OE2
2 atoms, 2 residues, 1 model selected
> ui tool show Distances
> distance /?:371@NH2 /?:259@OE2
Distance between /? ARG 371 NH2 and GLU 259 OE2: 3Å
> ui tool show "Selection Inspector"
> setattr sel g display false
Assigning display attribute to 1 item
> setattr sel g display true
Assigning display attribute to 1 item
> setattr sel g halfbond true
Assigning halfbond attribute to 1 item
> setattr sel g halfbond false
Assigning halfbond attribute to 1 item
> setattr sel g halfbond true
Assigning halfbond attribute to 1 item
> setattr sel g halfbond false
Assigning halfbond attribute to 1 item
> setattr sel g display false
Assigning display attribute to 1 item
> setattr sel g display true
Assigning display attribute to 1 item
> setattr =sel p display false
Assigning display attribute to 1 item
> setattr =sel p display true
Assigning display attribute to 1 item
> setattr =sel p display false
Assigning display attribute to 1 item
> setattr =sel p display true
Assigning display attribute to 1 item
> hide #2.1 models
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> distance style color #5bff2e
> distance style color #54ff2e
> distance style color #4bff2f
> distance style color #3dff2f
> distance style color #2fff2f
> distance style color #32ff2f
> distance style color #38ff2e
> distance style color #46ff2a
> distance style color #58ff25
> distance style color #67ff21
> distance style color #67ff20
> distance style color #6bff08
> distance style color #70ff03
> distance style color #70ff02
> distance style color #6fff00
> distance style color #66ff00
> distance style color #432aff
> distance style color #4a2aff
> distance style color #4929ff
> distance style color #4d29ff
> distance style color #5227ff
> distance style color #5926ff
> distance style color #6122ff
> distance style color #681dff
> distance style color #6d19ff
> distance style color #7315ff
> distance style color #7715ff
> distance style color #7c10ff
> distance style color #7d0bff
> distance style color #8307ff
> distance style color #8103ff
> distance style color #8001ff
> distance style color #8000ff
> distance style color #7700ff
> distance style color #7300ff
> distance style color #6a00ff
> distance style color #7300ff
> distance style color #7700ff
> distance style color #8000ff
> distance style color #8800ff
> distance style color #a200ff
> distance style color #bf00ff
> distance style color #d900ff
> distance style color #f700ff
> distance style color #ff02f2
> distance style color #ff05e6
> distance style color #ff06d5
> distance style color #ff0aca
> distance style color #ff0ebf
> distance style color #ff10b3
> distance style color #ff15ad
> distance style color #ff1ca8
> distance style color #ff20a6
> distance style color #ff229f
> distance style color #ff27a1
> distance style color #ff2ba3
> distance style color #ff2f9e
> distance style color #ff34a0
> distance style color #ff38a2
> distance style color #ff39a3
> distance style color #ff3ca4
> distance style color #ff3da4
> distance style color #ff3ea5
> distance style color #ff40a6
> distance style color #ff40ac
> distance style color #ff3eab
> distance style color #ff3eb2
> distance style color #ff3db1
> distance style color #ff3cb1
> distance style color #ff38af
> distance style color #ff34ae
> distance style color #ff33ad
> distance style color #ff30ac
> distance style color #ff2fac
> distance style color #ff2faf
> distance style color #ff2fbd
> distance style color #ff30bd
> distance style color #ff35eb
> distance style color #f83aff
> distance style color #e23cff
> distance style color #c940ff
> distance style color #b742ff
> distance style color #9d47ff
> distance style color #884cff
> distance style color #7553ff
> distance style color #6b57ff
> distance style color #655aff
> distance style color #5e5eff
> distance style color #626aff
> distance style color #6973ff
> distance style color #6f7dff
> distance style color #6f82ff
> distance style color #788cff
> distance style color #7e96ff
> distance style color #859fff
> distance style color #8ca5ff
> distance style color #93acff
> distance style color #99b1ff
> distance style color #9eb5ff
> distance style color #a5bdff
> distance style color #abc1ff
> distance style color #afc4ff
> distance style color #b0c5ff
> distance style color #b7caff
> distance style color #b8cbff
> distance style color #c0cfff
> distance style color #c6d0ff
> distance style color #cdd4ff
> distance style color #d3d5ff
> distance style color #dddcff
> distance style color #e8e4ff
> distance style color #f0ebff
> distance style color #f6f0ff
> distance style color #faf4ff
> distance style color #fdf9ff
> distance style color #fffdff
> distance style color white
> distance style color #fffcfc
> distance style color lavenderblush
> distance style color #ffeef5
> distance style color #efc6ff
> distance style color #a9b9ff
> distance style color #8bffe6
> distance style color #89ffdc
> distance style color #e2ff60
> distance style color #ff8349
> distance style color #ff3737
> distance style color #ff2626
> distance style color #ff1717
> distance style color #ff0c0c
> distance style color #ff0b0b
> distance style color red
> distance style color #ff0101
> distance style color #ff0202
> distance style color #ff0606
> distance style color #ff0c0c
> distance style color #ff1717
> distance style color #ff1818
> distance style color #ff2b2b
> distance style color #ff3a3a
> distance style color #ff4949
> distance style color #ff5353
> distance style color #ff5959
> distance style color #ff5e5e
> distance style color #ff6161
> distance style color #ff6262
> distance style color #ff6363
> distance style color #ff6565
> distance style color #ff6363
> distance style color #ff6262
> distance style color #ff6060
> distance style color #ff5d5d
> distance style color #ff5959
> distance style color #ff5858
> distance style color #ff4e4e
> distance style color #ff4242
> distance style color #ff3333
> distance style color #ff2222
> distance style color #ff1414
> distance style color #ff0606
> distance style color red
> distance style color #ff0202
> distance style color #ff1313
> distance style color #ff3c3c
> distance style color #ff6262
> distance style color #ff8989
> distance style color #ffc0c0
> distance style color #ffdbdb
> distance style color #ffdcdc
> distance style color white
> distance style color #fffdfd
> distance style color #fff6f6
> distance style color #ffeeee
> distance style color #ffe0e1
> distance style color #ffd3d4
> distance style color #ffc7c8
> distance style color #ffbcbd
> distance style color #ffb0b1
> distance style color #ffafb0
> distance style color #ffa5a6
> distance style color #ff9799
> distance style color #ff898b
> distance style color #ff797b
> distance style color #ff6a6c
> distance style color #ff5a5d
> distance style color #ff4a4d
> distance style color #ff3a3d
> distance style color #ff2b2f
> distance style color #ff2327
> distance style color #ff1418
> distance style color #ff070b
> distance style color #ff0004
> distance style color #ff000d
> distance style color #ff0011
> distance style color #ff0019
> distance style color #ff0022
> distance style color #ff0026
> distance style color #ff002f
> distance style color #ff0037
> distance style color #ff003c
> distance style color #ff0044
> distance style color #ff004c
> distance style color #ff0051
> distance style color #ff0059
> distance style color #ff0062
> distance style color #ff006f
> distance style color #ff0073
> distance style color #ff0099
> distance style color #ff00d0
> distance style color #e100ff
> distance style color #6600ff
> distance style color #0022ff
> distance style color #00b3ff
> distance style color #00ffaa
> distance style color #00ff9d
> distance style color lime
> distance style color #a6ff00
> distance style color #ffcc00
> distance style color #ff5500
> distance style color #ff1100
> distance style color red
> distance style color #fd0000
> distance style color #fe0000
> distance style color #fd0000
> distance style color #fa0000
> distance style color #f80000
> distance style color #ef0000
> distance style color #e30000
> distance style color #e20000
> distance style color #c70000
> distance style color #ad0000
> distance style color #900000
> distance style color #6c0000
> distance style color #4b0000
> distance style color #2a0000
> distance style color #0d0000
> distance style color #0c0000
> distance style color black
> distance style color #000200
> distance style color #000300
> distance style color #000400
> distance style color #000600
> distance style color #000700
> distance style color #000901
> distance style color #001101
> distance style color #001d02
> distance style color #002a03
> distance style color #007308
> distance style color #007808
> distance style color #007908
> distance style color #008b09
> distance style color #00990a
> distance style color #00a50b
> distance style color #00b00c
> distance style color #00be0d
> distance style color #00c80d
> distance style color #00d30e
> distance style color #00da0f
> distance style color #00e10f
> distance style color #00e60f
> distance style color #00ea10
> distance style color #00ec10
> distance style color #00f010
> distance style color #00f310
> distance style color #00f410
> distance style color #00f710
> distance style color #00fa11
> distance style color #00fd11
> distance style color #00ff11
> distance style color #29ff11
> distance style color #2cff14
> distance style color #27ff18
> distance style color #28ff19
> distance style color #21ff21
> distance style color #27ff2e
> distance style color #2aff38
> distance style color #2eff3c
> distance style color #31ff42
> distance style color #33ff44
> distance style color #34ff45
> distance style color #35ff42
> distance style color #37ff3e
> distance style color #38ff3f
> distance style color #39ff39
> distance style color #44ff3a
> distance style color #4aff3d
> distance style color #51ff3e
> distance style color #5aff41
> distance style color #5eff45
> distance style color #64ff49
> distance style color #66ff4b
> distance style color #6aff50
> distance style color #73ff54
> distance style color #76ff57
> distance style color #7aff5c
> distance style color #7cff5e
> distance style color #7dff60
> distance style color #7dff66
> distance style color #79ff6a
> distance style color #7dff6f
> distance style color #7bff72
> distance style color #7bff74
> distance style color #79ff77
> distance style color #7aff78
> distance style color #7dff81
> distance style color #82ff8a
> distance style color #86ff90
> distance style color #89ff9b
> distance style color #8bff9e
> distance style color #8fffa5
> distance style color #90ffaa
> distance style color #92ffad
> distance style color #94ffaf
> distance style color #94ffb2
> distance style color #94ffb6
> distance style color #94ffb8
> distance style color #92ffbf
> distance style color #8fffc1
> distance style color #8bffc9
> distance style color #86ffd1
> distance style color #82ffd5
> distance style color #80ffdb
> distance style color #80ffdf
> distance style color #7effdf
> distance style color #7dffdf
> distance style color #7dffe3
> distance style color #7cffe3
> distance style color #7bffe2
> distance style color #79ffe4
> distance style color #79ffe9
> distance style color #78ffeb
> distance style color #77ffeb
> distance style color #75ffea
> distance style color #74ffea
> distance style color #73ffea
> distance style color #72ffef
> distance style color #72fff3
> distance style color #70fff3
> distance style color #70ffee
> distance style color #70ffea
> distance style color #70ffe7
> distance style color #70ffe2
> distance style color #70ffe0
> distance style color #72ffdc
> distance style color #72ffd7
> distance style color #73ffd5
> distance style color #74ffd5
> distance style color #77ffcd
> distance style color #78ffcb
> distance style color #78ffc7
> distance style color #79ffc7
> distance style color #7bffc4
> distance style color #7cffc4
> distance style color #7dffc2
> distance style color #7dffbe
> distance style color #80ffc0
> distance style color #81ffbc
> distance style color #83ffbb
> distance style color #85ffbc
> distance style color #85ffb8
> distance style color #86ffb8
> distance style color #86ffb6
> distance style color #87ffb7
> distance style color #89ffb8
> distance style color #8affb5
> distance style color #8bffb6
> distance style color #8bffac
> distance style color #8bffa8
> distance style color #8bffa6
> distance style color #8bffa2
> distance style color #8bff9e
> distance style color #8cff9d
> distance style color #8eff97
> distance style color #8fff8f
> distance style color #97ff90
> distance style color #9dff92
> distance style color #a1ff92
> distance style color #a7ff93
> distance style color #acff93
> distance style color #b1ff94
> distance style color #b7ff95
> distance style color #baff95
> distance style color #beff95
> distance style color #bfff97
> distance style color #c1ff97
> distance style color #c4ff97
> distance style color #c6ff97
> distance style color #c9ff97
> distance style color #cdff97
> distance style color #ceff97
> distance style color #cfff98
> distance style color #d2ff98
> distance style color #d6ff98
> distance style color #d8ff98
> distance style color #dbff98
> distance style color #dbff97
> distance style color #deff97
> distance style color #ddff95
> distance style color #ddff94
> distance style color #ddff93
> distance style color #dcff92
> distance style color #dcff90
> distance style color #dcff8f
> distance style color #dbff8e
> distance style color #daff8a
> distance style color #d9ff87
> distance style color #d8ff83
> distance style color #d7ff82
> distance style color #d3ff81
> distance style color #d3ff80
> distance style color #d2ff7e
> distance style color #d2ff7d
> distance style color #d1ff7c
> distance style color #d1ff7b
> distance style color #d0ff79
> distance style color #cfff77
> distance style color #cfff75
> distance style color #ceff72
> distance style color #d2ff70
> distance style color #d1ff6f
> distance style color #d0ff6b
> distance style color #d0ff6a
> distance style color #d0ff69
> distance style color #cfff66
> distance style color #ceff63
> distance style color #cdff62
> distance style color #cdff61
> distance style color #ccff5e
> distance style color #ccff5d
> distance style color #cbff5c
> distance style color #caff59
> distance style color #caff58
> distance style color #caff57
> distance style color #c9ff55
> distance style color #c8ff50
> distance style color #c7ff4e
> distance style color #c6ff4a
> distance style color #c5ff47
> distance style color #c4ff46
> distance style color #c3ff42
> distance style color #c3ff41
> distance style color #c3ff40
> distance style color #c2ff3e
> distance style color #bbff3e
> distance style color #bbff3d
> distance style color #bbff3c
> distance style color #baff3a
> distance style color #baff39
> distance style color #b9ff38
> distance style color #b3ff38
> distance style color #9fff39
> distance style color #3dff64
> distance style color #3dff6e
> distance style color #3dff7e
> distance style color #3dff8e
> distance style color #3dff9e
> distance style color #3dffa4
> distance style color #3effc5
> distance style color #3effdf
> distance style color #40fff2
> distance style color #40fff9
> distance style color #40ecff
> distance style color #40d6ff
> distance style color #40c6ff
> distance style color #40b6ff
> distance style color #3eabff
> distance style color #3ea5ff
> distance style color #3da1ff
> distance style color #3d9bff
> distance style color #3d94ff
> distance style color #3d91ff
> distance style color #3c8aff
> distance style color #3c87ff
> distance style color #3c8aff
> distance style color #3d8bff
> distance style color #3d91ff
> distance style color #3e92ff
> distance style color #409cff
> distance style color #42a4ff
> distance style color #43aeff
> distance style color #46b8ff
> distance style color #49bfff
> distance style color #4ac6ff
> distance style color #4bc9ff
> distance style color #4ccfff
> distance style color #4ed6ff
> distance style color #4fd9ff
> distance style color #50dfff
> distance style color #50e2ff
> distance style color #52e2ff
> distance style color #52e8ff
> distance style color #53e8ff
> distance style color #53e2ff
> distance style color #54e0ff
> distance style color #55ccff
> distance style color #57bcff
> distance style color #58aeff
> distance style color #58a3ff
> distance style color #5993ff
> distance style color #598eff
> distance style color #5977ff
> distance style color #5961ff
> distance style color #6459ff
> distance style color #6c59ff
> distance style color #7559ff
> distance style color #7a59ff
> distance style color #8059ff
> distance style color #8359ff
> distance style color #895aff
> distance style color #915aff
> distance style color #985cff
> distance style color #a15dff
> distance style color #a95dff
> distance style color #ae5dff
> distance style color #af5eff
> distance style color #b45eff
> distance style color #b560ff
> distance style color #b760ff
> distance style color #bd60ff
> distance style color #c562ff
> distance style color #cb63ff
> distance style color #d063ff
> distance style color #d365ff
> distance style color #d466ff
> distance style color #d966ff
> distance style color #d967ff
> distance style color #da69ff
> distance style color #d569ff
> distance style color #d56bff
> distance style color #cf6fff
> distance style color #cc73ff
> distance style color #ca75ff
> distance style color #c778ff
> distance style color #c379ff
> distance style color #c27cff
> distance style color #c27dff
> distance style color #c080ff
> distance style color #c182ff
> distance style color #c183ff
> distance style color #c089ff
> distance style color #c08cff
> distance style color #c18fff
> distance style color #c493ff
> distance style color #c697ff
> distance style color #c799ff
> distance style color #c99cff
> distance style color #c99dff
> distance style color #ca9eff
> distance style color #cba0ff
> distance style color #cca0ff
> distance style color #cda1ff
> distance style color #d0a1ff
> distance style color #d1a2ff
> distance style color #d2a4ff
> distance style color #d2a5ff
> distance style color #d5a5ff
> distance style color #d5a6ff
> distance style color #d7a6ff
> distance style color #d7a7ff
> distance style color #d8a9ff
> distance style color #dba9ff
> distance style color #daa7ff
> distance style color #dda6ff
> distance style color #e3a0ff
> distance style color #e998ff
> distance style color #ed92ff
> distance style color #ee8eff
> distance style color #f587ff
> distance style color #f782ff
> distance style color #fb7cff
> distance style color #fa75ff
> distance style color #fa6fff
> distance style color #ff69ff
> distance style color #ff66ff
> distance style color #ff61ff
> distance style color #ff5aff
> distance style color #ff53ff
> distance style color #ff4eff
> distance style color #ff49ff
> distance style color #f946ff
> distance style color #f943ff
> distance style color #f942ff
> distance style color #f941ff
> distance style color #f240ff
> distance style color #f23eff
> distance style color #f23dff
> distance style color #f23aff
> distance style color #f238ff
> distance style color #f131ff
> distance style color #f12aff
> distance style color #f022ff
> distance style color #f01cff
> distance style color #ef15ff
> distance style color #f715ff
> distance style color #f70fff
> distance style color #f708ff
> distance style color #f705ff
> distance style color #f702ff
> distance style color #f701ff
> distance style color #f700ff
> distance style color #ee00ff
> distance style color #ea00ff
> distance style color #e100ff
> distance style color #d900ff
> distance style color #d400ff
> distance style color #cc00ff
> distance style color #c800ff
> distance style color #bf00ff
> distance style color #b700ff
> distance style color #aa00ff
> distance style color #8c00ff
> distance style color #6a00ff
> distance style color #5100ff
> distance style color #3c00ff
> distance style color #2b00ff
> distance style color #2002ff
> distance style color #2205ff
> distance style color #1808ff
> distance style color #1014ff
> distance style color #1420ff
> distance style color #1c33ff
> distance style color #2243ff
> distance style color #2957ff
> distance style color #2e66ff
> distance style color #3474ff
> distance style color #3776ff
> distance style color #3d87ff
> distance style color #4294ff
> distance style color #479aff
> distance style color #4ca8ff
> distance style color #4faaff
> distance style color #54b5ff
> distance style color #55b5ff
> distance style color #58bcff
> distance style color #5ac0ff
> distance style color #5cc1ff
> distance style color #5dc6ff
> distance style color #61cdff
> distance style color #62cdff
> distance style color #65d1ff
> distance style color #67d6ff
> distance style color #69d7ff
> distance style color #6bd8ff
> distance style color #6cd8ff
> distance style color #6ed8ff
> distance style color #6fd9ff
> distance style color #70d9ff
> distance style color #72d9ff
> distance style color #73daff
> distance style color #73deff
> distance style color #75dfff
> distance style color #77e2ff
> distance style color #79e2ff
> distance style color #7be2ff
> distance style color #7ce3ff
> distance style color #7ce7ff
> distance style color #7ee7ff
> distance style color #81e8ff
> distance style color #82e8ff
> distance style color #83e8ff
> distance style color #85e9ff
> distance style color #87e5ff
> distance style color #89e0ff
> distance style color #8bdcff
> distance style color #8cdbff
> distance style color #8fd8ff
> distance style color #90d3ff
> distance style color #93d0ff
> distance style color #94cdff
> distance style color #95ccff
> distance style color #95c8ff
> distance style color #97c6ff
> distance style color #98c6ff
> distance style color #99c7ff
> distance style color #99c5ff
> distance style color #9bc6ff
> distance style color #9bc3ff
> distance style color #9cc4ff
> distance style color #9cc2ff
> distance style color #9cbfff
> distance style color #9dbfff
> distance style color #9ebdff
> distance style color #a1bdff
> distance style color #a2beff
> distance style color #a2bbff
> distance style color #a2beff
> distance style color #a1bfff
> distance style color #a0c4ff
> distance style color #9dc7ff
> distance style color #9dccff
> distance style color #9cd1ff
> distance style color #9bd4ff
> distance style color #99d6ff
> distance style color #99d8ff
> distance style color #98d8ff
> distance style color #98dbff
> distance style color #98deff
> distance style color #97deff
> distance style color #97e0ff
> distance style color #95dfff
> distance style color #95e3ff
> distance style color #94e2ff
> distance style color #93e2ff
> distance style color #93e6ff
> distance style color #92e6ff
> distance style color #92e7ff
> distance style color #90e7ff
> distance style color #90ebff
> distance style color #8feaff
> distance style color #8fecff
> distance style color #8ff0ff
> distance style color #8ef0ff
> distance style color #8ef4ff
> distance style color #8cf5ff
> distance style color #8bf9ff
> distance style color #8affff
> distance style color #89fff7
> distance style color #89fff5
> distance style color #87fff1
> distance style color #86ffed
> distance style color #86ffeb
> distance style color #86ffe7
> distance style color #85ffe5
> distance style color #83ffdc
> distance style color #83ffda
> distance style color #83ffd6
> distance style color #82ffd5
> distance style color #82ffd1
> distance style color #82ffd5
> distance style color #82ffda
> distance style color #82ffdc
> distance style color #82ffe0
> distance style color #82ffe4
> distance style color #81ffe4
> distance style color #80ffe3
> distance style color #7effe5
> distance style color #7dffe9
> distance style color #7cffeb
> distance style color #79ffeb
> distance style color #78ffeb
> distance style color #75ffea
> distance style color #74ffea
> distance style color #72ffea
> distance style color #70ffea
> distance style color #6fffe9
> distance style color #6effe9
> distance style color #6cffe9
> distance style color #6bffe9
> distance style color #6affe9
> distance style color #69ffe9
> distance style color #69ffe6
> distance style color #67ffe6
> distance style color #65ffe5
> distance style color #63ffe0
> distance style color #61ffdf
> distance style color #5dffdc
> distance style color #5affdb
> distance style color #58ffdb
> distance style color #57ffdb
> distance style color #57ffdd
> distance style color #57ffe6
> distance style color #54ffeb
> distance style color #53fff4
> distance style color #52ffff
> distance style color #50fcff
> distance style color #4ff0ff
> distance style color #4eedff
> distance style color #4be7ff
> distance style color #4be1ff
> distance style color #4ae1ff
> distance style color #49e1ff
> distance style color #47e6ff
> distance style color #47edff
> distance style color #46ecff
> distance style color #46f0ff
> distance style color #45efff
> distance style color #45f6ff
> distance style color #45fcff
> distance style color #45ffff
> distance style color #47fff9
> distance style color #47fff3
> distance style color #4affea
> distance style color #4fffe2
> distance style color #50ffd9
> distance style color #55ffd5
> distance style color #57ffcf
> distance style color #5cffc9
> distance style color #61ffc5
> distance style color #62ffc3
> distance style color #63ffc3
> distance style color #65ffc4
> distance style color #67ffc0
> distance style color #69ffc1
> distance style color #69ffbb
> distance style color #6affbc
> distance style color #6affb9
> distance style color #6affb4
> distance style color #6affb0
> distance style color #6affad
> distance style color #6affa8
> distance style color #6affa6
> distance style color #6affa1
> distance style color #6aff9c
> distance style color #6bff95
> distance style color #6bff90
> distance style color #6cff8e
> distance style color #6cff89
> distance style color #6eff8b
> distance style color #6eff86
> distance style color #6eff84
> distance style color #6eff7f
> distance style color #6eff7a
> distance style color #6eff78
> distance style color #6eff73
> distance style color #6fff74
> distance style color #6fff79
> distance style color #6fff7b
> distance style color #70ff7c
> distance style color #70ff81
> distance style color #72ff82
> distance style color #72ff87
> distance style color #72ff89
> distance style color #73ff8a
> distance style color #73ff8f
> distance style color #74ff94
> distance style color #75ff95
> distance style color #75ff98
> distance style color #77ff99
> distance style color #79ffa3
> distance style color #7cffa5
> distance style color #7effa9
> distance style color #80ffaf
> distance style color #81ffaf
> distance style color #82ffb0
> distance style color #82ffb4
> distance style color #83ffb5
> distance style color #85ffb8
> distance style color #85ffbc
> distance style color #86ffbc
> distance style color #87ffbd
> distance style color #8affbf
> distance style color #8fffc3
> distance style color #90ffc8
> distance style color #94ffca
> distance style color #97ffce
> distance style color #99ffd1
> distance style color #9bffd5
> distance style color #9cffd6
> distance style color #9effd7
> distance style color #a1ffdb
> distance style color #a2ffdb
> distance style color #a2ffdd
> distance style color #a2ffe0
> distance style color #a2ffe5
> distance style color #a2ffe8
> distance style color #a2ffec
> distance style color #a1fff1
> distance style color #a0fff9
> distance style color #a0ffff
> distance style color #9efdff
> distance style color #9efaff
> distance style color #9ef7ff
> distance style color #9df7ff
> distance style color #9df5ff
> distance style color #9df2ff
> distance style color #9defff
> distance style color #9cefff
> color #2 #9cefff models transparency 0
> color #2.1 #9cefff models transparency 0
> ~distance /?:371@NH2 /?:259@OE2
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> ui tool show "Build Structure"
> resrenumber
Unknown command: resrenumber
> resrenumber :
Unknown command: resrenumber :
> ui tool show "Show Sequence Viewer"
> sequence chain /?
Destroying pre-existing alignment with identifier 1/
Alignment identifier is 1/
> help help:user
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
——— End of log from Wed Jun 1 13:35:48 2022 ———
opened ChimeraX session
> ui tool show Distances
> distance
Missing or invalid "objects" argument: empty atom specifier
> distance 185
Missing or invalid "objects" argument: invalid objects specifier
> select clear
> select add /?:259@OE1
1 atom, 1 residue, 1 model selected
> select /?:371@NH2
1 atom, 1 residue, 1 model selected
> select add /?:259@OE1
2 atoms, 2 residues, 1 model selected
> select subtract /?:259@OE1
1 atom, 1 residue, 1 model selected
> select add /?:259@OE1
2 atoms, 2 residues, 1 model selected
> distance /?:371@NH2 /?:259@OE1
Distance between /? ARG 371 NH2 and GLU 259 OE1: 2.998Å
> distance :185@OH :326@OD1
Distance between /? TYR 185 OH and ASP 326 OD1: 2.735Å
> ~distance /?:185@OH /?:326@OD1
> distance style color #9cefff
> hide #2.1 models
> color #2 #9cefff models transparency 0
> select clear
> color #2 #ffd670 models transparency 0
> color #2 #ffb75e models transparency 0
> color #2 #fcff54 models transparency 0
> color #2 #aeff70 models transparency 0
> color #2 #94ff74 models transparency 0
> color #2 #98ff81 models transparency 0
> color #2 #a9ff8f models transparency 0
> color #2 #556cff models transparency 0
> color #2 #ff8082 models transparency 0
> color #2 #ff6f71 models transparency 0
> color #2 #ff2f78 models transparency 0
> color #2 #794cff models transparency 0
> color #2 #4eff71 models transparency 0
> color #2 #97ff77 models transparency 0
> color #2 #ffe865 models transparency 0
> color #2 #ffff14 models transparency 0
> color #2 #2cffa7 models transparency 0
> color #2 #26dd91 models transparency 0
> distance style color #26dd91
> distance :198@OD1 :304@NE1
Distance between /? ASN 198 OD1 and TRP 304 NE1: 3.556Å
> show #2.1 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> color #2 #26dd91 models transparency 0
> color #2.1 #26dd91 models transparency 0
> distance :198@OD1 :370@NH2
Distance between /? ASN 198 OD1 and ARG 370 NH2: 3.028Å
> distance :198@ND2 :372@OD1
Distance between /? ASN 198 ND2 and ASN 372 OD1: 2.885Å
> distance :199@O :370@NH1
Distance between /? THR 199 O and ARG 370 NH1: 2.743Å
> distance :200@O :370@NH1
Distance between /? GLU 200 O and ARG 370 NH1: 2.794Å
> distance :200@O :375@ND2
Distance between /? GLU 200 O and ASN 375 ND2: 3.704Å
> distance :200@OE1 :330@NE
Distance between /? GLU 200 OE1 and ARG 330 NE: 4.837Å
> distance :200@OE1 :330@NH2
Distance between /? GLU 200 OE1 and ARG 330 NH2: 4.942Å
> distance :200@OE2 :330@NE
Distance between /? GLU 200 OE2 and ARG 330 NE: 2.956Å
> distance :200@OE2 :330@NH2
Distance between /? GLU 200 OE2 and ARG 330 NH2: 2.810Å
> distance :201@O :375@ND2
Distance between /? ASP 201 O and ASN 375 ND2: 3.900Å
> ~distance /?:371@NH2 /?:259@OE1
> distance :237@OD1 :373@NE1
Distance between /? ASP 237 OD1 and TRP 373 NE1: 2.862Å
> distance :259@O :3372@ND2
Expected exactly two atoms and/or measurable objects (e.g. axes, planes), got
1
> distance :259@O :372@ND2
Distance between /? GLU 259 O and ASN 372 ND2: 3.009Å
> distance :259@OE1 :371@NH1
Distance between /? GLU 259 OE1 and ARG 371 NH1: 2.656Å
> distance :259@OE1 :371@NH2
Distance between /? GLU 259 OE1 and ARG 371 NH2: 2.998Å
> distance :259@OE2 :371@NH1
Distance between /? GLU 259 OE2 and ARG 371 NH1: 3.381Å
> distance :259@OE2 :371@NH2
Distance between /? GLU 259 OE2 and ARG 371 NH2: 2.664Å
> distance :260@OD2 :303@OH
Distance between /? ASP 260 OD2 and TYR 303 OH: 2.644Å
> hide #!2 models
> show #!2 models
> color #2 #26dd91 models transparency 0
> show #2.1 models
> hide #2.1 models
> ~label #1#!2 residues
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting_H1.cxs"
[Repeated 1 time(s)]
——— End of log from Wed Jun 1 14:06:17 2022 ———
opened ChimeraX session
> lighting shadows false
> lighting shadows true
> lighting shadows false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> lighting soft
> graphics silhouettes true
> lighting full
> graphics silhouettes false
> lighting simple
> lighting full
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> graphics silhouettes false
> lighting flat
> graphics silhouettes false
> lighting soft
> lighting flat
> lighting full
> graphics silhouettes false
> ui tool show "Side View"
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting_H1.cxs"
> save "F:/Project Kun_BEZ md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/H1.gif"
> width 1341 height 874 supersample 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\\\Project Kun_BEZ
> md\\\0_TcdB_1_Bez\\\4.Analyze\\\hbond_40\\\1_oct8\\\interacting_H1.cxs"
Log from Wed Jun 1 14:15:33 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\\\Project Kun_BEZ
> md\\\0_TcdB_1_Bez\\\4.Analyze\\\hbond_40\\\1_oct8\\\interacting_H1.cxs"
Log from Wed Jun 1 14:06:17 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\\\Project Kun_BEZ
> md\\\0_TcdB_1_Bez\\\4.Analyze\\\hbond_40\\\1_oct8\\\interacting.cxs"
Log from Wed Jun 1 13:35:48 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\Project Kun_BEZ
> md\0_TcdB_1_Bez\4.Analyze\hbond_40\1_oct8\interacting.cxs" format session
Log from Wed Jun 1 11:48:35 2022UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open "F:\\\Project Kun_BEZ
> md\\\0_TcdB_1_Bez\\\4.Analyze\\\hbond_40\\\1_oct8\\\interacting.cxs"
Log from Tue May 31 23:08:22 2022 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/clustered.pdb"
Chain information for clustered.pdb #1
---
Chain | Description
? | No description available
> select /?
17237 atoms, 17461 bonds, 1139 residues, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain /?
Alignment identifier is 1/
> show target m
> hide target m
[Repeated 1 time(s)]
> show target m
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-93
1413 atoms, 1432 bonds, 93 residues, 1 model selected
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:481
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /*:481-491
191 atoms, 191 bonds, 11 residues, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:481-491
191 atoms, 191 bonds, 11 residues, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:492
12 atoms, 11 bonds, 1 residue, 1 model selected
> select /*:492-493
29 atoms, 27 bonds, 2 residues, 1 model selected
> select /*:437
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /*:437
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /*:481-491
191 atoms, 191 bonds, 11 residues, 1 model selected
> select /*:1-480
7293 atoms, 7400 bonds, 480 residues, 1 model selected
> select /*:1-488
7433 atoms, 7540 bonds, 488 residues, 1 model selected
> select /*:1-492
7496 atoms, 7604 bonds, 492 residues, 1 model selected
> select ~sel
9741 atoms, 9857 bonds, 647 residues, 1 model selected
> hide sel cartoons
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272
17 atoms, 16 bonds, 1 residue, 1 model selected
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> select /*:491
22 atoms, 21 bonds, 1 residue, 1 model selected
> select /*:491-492
34 atoms, 33 bonds, 2 residues, 1 model selected
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272
17 atoms, 16 bonds, 1 residue, 1 model selected
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> set bgColor white
> set bgColor black
> set bgColor white
> set bgColor black
> lighting simple
> lighting soft
> lighting full
> lighting simple
> lighting soft
> lighting full
> lighting simple
> lighting flat
> lighting shadows true intensity 0.5
> lighting simple
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> set bgColor white
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting flat
[Repeated 1 time(s)]
> lighting full
> lighting soft
> lighting simple
> graphics silhouettes false
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting simple
> graphics silhouettes false
> lighting shadows true
> lighting shadows false
> set bgColor gray
> set bgColor white
> set bgColor gray
> set bgColor white
> set bgColor gray
> set bgColor white
> cartoon style sel xsection oval modeHelix default
> cartoon style sel xsection rectangle modeHelix default
> cartoon style (sel & coil) xsection oval
> cartoon style sel xsection barbell modeHelix default
> cartoon style sel modeHelix tube sides 20
> cartoon style sel xsection oval modeHelix default
> cartoon style sel xsection rectangle modeHelix default
> cartoon style sel xsection oval modeHelix default
> graphics silhouettes true
> graphics silhouettes false
> undo
[Repeated 9 time(s)]
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.
> color sel bypolymer
> rainbow sel
> color bfactor sel
4197 atoms, 271 residues, atom bfactor range 0 to 0
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? CYX 514 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
[Repeated 3 time(s)]Skipping possible acceptor with bad geometry: /? CYX 949
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
[Repeated 2 time(s)]Skipping possible acceptor with bad geometry: /? CYX 514
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
Skipping possible acceptor with bad geometry: /? CYX 949 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
Skipped 9 atom(s) with bad connectivities; see log for details
246 hydrogen bonds found
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? CYX 514 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
[Repeated 3 time(s)]Skipping possible acceptor with bad geometry: /? CYX 949
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
[Repeated 2 time(s)]Skipping possible acceptor with bad geometry: /? CYX 514
SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 514 SG
Skipping possible acceptor with bad geometry: /? CYX 949 SG
Wrong number of grandchild atoms for phi/psi acceptor /? CYX 949 SG
Skipped 9 atom(s) with bad connectivities; see log for details
246 hydrogen bonds found
> ~hbonds
[Repeated 1 time(s)]
> hide sel atoms
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> hide sel atoms
> select /?
17237 atoms, 17461 bonds, 1 pseudobond, 1139 residues, 2 models selected
> hide sel atoms
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> ui tool show "Color Actions"
> color sel cornflower blue
> color sel blue
> color sel light sea green
> color sel cyan
> color sel cornflower blue
> color sel medium blue
> color sel cornflower blue
> color sel #00aaffff
> color sel #4393c3ff
> color sel #92c5deff
> color sel #abd9e9ff
> color sel #ffffffff
> color sel #abd9e9ff
> select clear
> color #d73027ff
> color #fdae61ff
> color #ffffffff
> color #fdae61ff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #abd9e9ff
> select clear
> color #d73027ff
> color #fee090ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #abd9e9ff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #fdae61ff
> color sel #abd9e9ff
> color sel #ffffffff
> color sel #abd9e9ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #fdae61ff
> color sel #fee090ff
> color sel #fdae61ff
> color sel #f4a582ff
> color sel #b2182bff
> color sel #ffffffff
> color sel #b2182bff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #abd9e9ff
> color sel #ffffffff
> color sel #2166acff
> color sel #053061ff
> color sel #ffffffff
> color sel #053061ff
> color sel #abd9e9ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #f4a582ff
> select clear
> color sienna
> color coral
> color saddle brown
> color chocolate
> color brown
> color tomato
> color dark salmon
> color salmon
> color dark red
> color crimson
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #abd9e9ff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #ffffffff
> color sel #f4a582ff
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
——— End of log from Tue May 31 23:08:22 2022 ———
opened ChimeraX session
> hide sel cartoons
> show sel cartoons
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> ui tool show "Color Actions"
> color sel cyan
> color sel aquamarine
> color sel sky blue
> color sel cyan
> color sel deep sky blue
> color sel royal blue
> color sel dark turquoise
> color sel dark cyan
> color sel cornflower blue
> color sel teal
> color sel steel blue
> color sel sky blue
> color sel light sky blue
> color sel pale turquoise
> color sel powder blue
> color sel medium turquoise
> color sel turquoise
> color sel dark turquoise
> color sel olive drab
> color sel light sea green
> color sel medium turquoise
> color sel turquoise
> color sel medium aquamarine
> color sel teal
> color sel steel blue
> color sel royal blue
> select clear
> color #00aaffff
> select /*:272-492
3299 atoms, 3343 bonds, 221 residues, 1 model selected
> color sel #ff5500ff
> color sel #ff0000ff
> color sel #ffaa7fff
> color sel #ff0000ff
> color sel #00aaffff
> color sel #058affff
> color sel #0199ffff
> color sel #00aeffff
> color sel #00ddffff
> color sel #00ffccff
> color sel #00ff80ff
> color sel #00ff51ff
> color sel #00ff1eff
> color sel #00ff11ff
> color sel #04ff00ff
> color sel #11ff00ff
> color sel #3cff00ff
> color sel #7bff00ff
> color sel #9dff00ff
> color sel #c8ff00ff
> color sel #eaff00ff
> color sel #f2ff00ff
> color sel #fbff00ff
> color sel #ffff00ff
> color sel #ffee00ff
> color sel #ffc800ff
> color sel #ffbf00ff
> color sel #ffb700ff
> color sel #ff9d00ff
> color sel #ff8c00ff
> color sel #ff8800ff
> color sel #ffffffff
> color sel #ffb701ff
> color sel #ffb700ff
> color sel #ffb300ff
> color sel #ffa200ff
> color sel #ff8c00ff
> color sel #ff6600ff
> color sel #ffffffff
> color sel #0055ffff
> color sel #00aaffff
> color sel #0055ffff
> color sel #ffffffff
> color sel #0055ffff
> color sel #f4a582ff
> color sel #ff6600ff
> color sel #aa0000ff
> color sel #ff6600ff
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #0055ffff
> color sel #00aaffff
> select clear
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> select clear
> select : 174 176
Expected a keyword
> select : 174,176
37 atoms, 36 bonds, 2 residues, 1 model selected
> select : 174,176,185,198-201
113 atoms, 111 bonds, 7 residues, 1 model selected
> select : 174,176,185,198-201,237,259-260,
Expected an objects specifier or a keyword
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> select : 174,176,185,198-201,237,259-260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> show sel atoms
> style sel stick
Changed 344 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel tube/slab shape box
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel fill
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel slab
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel tube/slab shape box
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> style sel ringFill thin
Changed 20 residue ring styles
> style sel stick
Changed 344 atom styles
> color sel byhetero
> ui tool show "Color Actions"
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #0055ffff
> color sel byhetero
> select : 303,304,326,328,330,370-373,3750
178 atoms, 178 bonds, 9 residues, 1 model selected
> color sel #aa0000ff
> color sel byhetero
> select H
8421 atoms, 1139 residues, 1 model selected
> hide sel atoms
> show sel atoms
> hide sel atoms
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> ui tool show "Color Actions"
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061ff
> color sel byhetero
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #aaffffff
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061ff
> color sel byhetero
> color sel #d1e5f0ff
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> color sel #f4a582ff
> select : 174,176,185,198-201,237,259-260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061ff
> color sel byhetero
> select clear
> color #92c5deff
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select : 174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #053061ff
> color sel byhetero
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> color sel #f4a582ff
> select : ,303,304,326,328,330,370-373,375
Expected an objects specifier or a keyword
> color sel #b2182bff
> color sel #f4a582ff
> select : ,303,304,326,328,330,370-373,375
Expected an objects specifier or a keyword
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> color sel #b2182bff
> color sel #aa0000ff
> color sel #b2182bff
> color sel byhetero
> select clear
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> style sel ringFill thick
Changed 20 residue ring styles
> style sel ringFill off
Changed 20 residue ring styles
> nucleotides sel tube/slab
> nucleotides sel ladder
> style sel sphere
Changed 344 atom styles
> style sel stick
Changed 344 atom styles
> ui tool show "Selection Inspector"
> size =sel stickRadius 0.19
Changed 339 bond radii
> size =sel stickRadius 0.18
Changed 339 bond radii
> size =sel stickRadius 0.17
Changed 339 bond radii
> size =sel stickRadius 0.16
Changed 339 bond radii
> size =sel stickRadius 0.15
Changed 339 bond radii
> size =sel stickRadius 0.14
Changed 339 bond radii
> size =sel stickRadius 0.13
Changed 339 bond radii
> size =sel stickRadius 0.12
Changed 339 bond radii
> size =sel stickRadius 0.11
Changed 339 bond radii
> size =sel stickRadius 0.1
Changed 339 bond radii
> setattr =sel b halfbond false
Assigning halfbond attribute to 339 items
> setattr =sel b halfbond true
Assigning halfbond attribute to 339 items
> setattr =sel b halfbond false
Assigning halfbond attribute to 339 items
> setattr =sel b halfbond true
Assigning halfbond attribute to 339 items
> setattr =sel b display false
Assigning display attribute to 339 items
> setattr =sel b display true
Assigning display attribute to 339 items
> setattr sel r thin_rings true
Assigning thin_rings attribute to 20 items
> setattr sel r ring_display true
Assigning ring_display attribute to 20 items
> cartoon hide sel
> cartoon sel
> cartoon hide sel
> cartoon sel
> select clear
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> setattr sel r ring_display false
Assigning ring_display attribute to 20 items
> setattr sel structures autochain false
Assigning autochain attribute to 1 item
> setattr sel structures autochain true
Assigning autochain attribute to 1 item
> size =sel stickRadius 0.11
Changed 339 bond radii
> size =sel stickRadius 0.12
Changed 339 bond radii
> size =sel stickRadius 0.13
Changed 339 bond radii
> size =sel stickRadius 0.14
Changed 339 bond radii
> size =sel stickRadius 0.13
Changed 339 bond radii
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> setattr sel r phi -2.14748e+09
Assigning phi attribute to 271 items
Cannot set attribute 'phi' to '-2.14748e+09'
> setattr sel r phi -2.14748e+09
Assigning phi attribute to 271 items
Cannot set attribute 'phi' to '-2.14748e+09'
> cartoon hide sel
> cartoon sel
> setattr sel r ribbon_hide_backbone false
Assigning ribbon_hide_backbone attribute to 271 items
> setattr sel r ribbon_hide_backbone true
Assigning ribbon_hide_backbone attribute to 271 items
> setattr sel r ribbon_hide_backbone false
Assigning ribbon_hide_backbone attribute to 271 items
> setattr sel r ribbon_hide_backbone true
Assigning ribbon_hide_backbone attribute to 271 items
> size sel ballScale 0.24
Changed 1 ball scales
> size sel ballScale 0.23
Changed 1 ball scales
> size sel ballScale 0.22
Changed 1 ball scales
> size sel ballScale 0.21
Changed 1 ball scales
> size sel ballScale 0.2
Changed 1 ball scales
> size sel ballScale 0.19
Changed 1 ball scales
> size sel ballScale 0.18
Changed 1 ball scales
> size sel ballScale 0.17
Changed 1 ball scales
> size sel ballScale 0.16
Changed 1 ball scales
> size sel ballScale 0.15
Changed 1 ball scales
> size sel ballScale 0.14
Changed 1 ball scales
> size sel ballScale 0.13
Changed 1 ball scales
> size sel ballScale 0.12
Changed 1 ball scales
> size sel ballScale 0.11
Changed 1 ball scales
> size sel ballScale 0.1
Changed 1 ball scales
> size sel ballScale 0.09
Changed 1 ball scales
> size sel ballScale 0.08
Changed 1 ball scales
> size sel ballScale 0.07
Changed 1 ball scales
> size sel ballScale 0.06
Changed 1 ball scales
> size sel ballScale 0.05
Changed 1 ball scales
> size sel ballScale 0.04
Changed 1 ball scales
> size sel ballScale 0.05
Changed 1 ball scales
> size sel ballScale 0.06
Changed 1 ball scales
> size sel ballScale 0.07
Changed 1 ball scales
> size sel ballScale 0.08
Changed 1 ball scales
> size sel ballScale 0.09
Changed 1 ball scales
> size sel ballScale 0.1
Changed 1 ball scales
> size sel ballScale 0.11
Changed 1 ball scales
> size sel ballScale 0.12
Changed 1 ball scales
> size sel ballScale 0.13
Changed 1 ball scales
> size sel ballScale 0.14
Changed 1 ball scales
> size sel ballScale 0.15
Changed 1 ball scales
> size sel ballScale 0.16
Changed 1 ball scales
> size sel ballScale 0.17
Changed 1 ball scales
> size sel ballScale 0.18
Changed 1 ball scales
> size sel ballScale 0.19
Changed 1 ball scales
> size sel ballScale 0.2
Changed 1 ball scales
> size sel ballScale 0.21
Changed 1 ball scales
> size sel ballScale 0.22
Changed 1 ball scales
> size sel ballScale 0.23
Changed 1 ball scales
> size sel ballScale 0.24
Changed 1 ball scales
> size sel ballScale 0.25
Changed 1 ball scales
> setattr sel struct display false
Assigning display attribute to 1 item
> setattr sel struct display true
Assigning display attribute to 1 item
> setattr sel structures autochain false
Assigning autochain attribute to 1 item
> setattr sel structures autochain true
Assigning autochain attribute to 1 item
> ui tool show "Selection Inspector"
> setattr sel a occupancy 0.9
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.8
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.7
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.6
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.5
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.4
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.3
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.2
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.1
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.1
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.2
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.3
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.4
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.5
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.6
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.7
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.8
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 0.9
Assigning occupancy attribute to 4197 items
> setattr sel a occupancy 1
Assigning occupancy attribute to 4197 items
> select clear
> graphics silhouettes true
> graphics silhouettes false
> lighting flat
[Repeated 1 time(s)]
> lighting soft
> lighting simple
> lighting flat
[Repeated 1 time(s)]
> lighting simple
> lighting soft
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> graphics silhouettes true
> graphics silhouettes false
> lighting soft
> lighting flat
> graphics silhouettes false
> lighting simple
> graphics silhouettes true
> graphics silhouettes false
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> view
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
——— End of log from Wed Jun 1 11:48:35 2022 ———
opened ChimeraX session
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select ~sel
16893 atoms, 17122 bonds, 1119 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #b2182bfe
> color sel #b2182bfd
> color sel #b2182bfc
> color sel #b2182bfb
> color sel #b2182bfa
> color sel #b2182bf9
> color sel #b2182bf8
> color sel #b2182bf7
> color sel #b2182bf6
> color sel #b2182bf5
> color sel #b2182b02
> color sel #b2182b19
> color sel #b2182bfa
> color sel #b2182b19
> color sel #b2182bfa
> color sel #b2182b19
> color sel #b2182b02
> color sel #b2182b14
> color sel #b2182bc8
> color sel #b2182b14
> color sel #b2182b02
> color sel #b2182b01
> color sel #b2182b0f
> color sel #b2182b96
> color sel #b2182b0f
> color sel #b2182b01
> color sel #b2182b05
> color sel #b2182b32
> color sel #b2182b05
> color sel #b2182b01
> color sel #b2182b0a
> color sel #b2182b64
> color sel #b2182b0a
> color sel #b2182b01
> color sel #b2182b05
> color sel #b2182b32
> select clear
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #f4a58232
> select /*:272-491
3287 atoms, 3331 bonds, 220 residues, 1 model selected
> color sel #b2182b32
> color sel #f4a58232
> select /*:1-271
4197 atoms, 4261 bonds, 271 residues, 1 model selected
> color sel #92c5de32
> select : 174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #0055ff32
> color sel #0055ff02
> color sel #0055ff19
> color sel #0055fffa
> color sel #053061fa
> color sel byhetero
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> color sel #b2182bfa
> color sel byhetero
> select clear
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui mousemode right label
[Repeated 1 time(s)]
> label sel attribute name
> label sel attribute label_one_letter_code
> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select text "/{0.chain_id} {0.label_one_letter_code} {0.number}{
> 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375}"
Expected an objects specifier or a keyword
> select "/{0.chain_id} {0.label_one_letter_code} {0.number}{
> 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375}"
Expected an objects specifier or a keyword
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui mousemode right label
> label sel text "/{0.chain_id} {0.name} {0.number}{0.insertion_code}"
> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> ui tool show "Selection Inspector"
> label sel text 424
> label 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> label 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> label sel attribute label_one_letter_code
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> label_one_letter_code
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> [label_one_letter_code]
Expected one of 'atoms', 'bonds', 'pseudobonds', or 'residues' or a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> attribute label _one_letter_code
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> attribute label
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> attribute label {0.chain_id}
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> residues attribute {0.chain_id}
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
> residues text {0.chain_id}
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> label sel text "/{0.chain_id} {0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "/{0.chain_id} {0.label_one_letter_code} {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "/{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
> ui tool show "Color Actions"
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> "{0.label_one_letter_code}{0.number}{0.insertion_code}"
Expected a keyword
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select :174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel #053061fa
> color sel byhetero
> color sel #b2182bfa
> color sel #053061fa
> color sel byhetero
> color sel brown target l
> color sel indian red target l
> color sel spring green target l
> color sel blue target l
> select :303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> color sel red target l
> color sel fire brick target l
> color sel maroon target l
> color sel dark red target l
> color sel crimson target l
> color sel orange red target l
> color sel coral target l
> color sel indian red target l
> color sel dark red target l
> color sel orange red target l
> color sel yellow target l
> ui mousemode right label
> ui mousemode right distance
> ui mousemode right label
> select clear
> ui mousemode right label
> ui mousemode right select
> ui mousemode right label
> label delete residues
[Repeated 1 time(s)]
> label (#1::chain_id=' '&:303)
> label delete residues
> undo
[Repeated 4 time(s)]
> select clear
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
> select clear
[Repeated 2 time(s)]
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui tool show "Color Actions"
> select : 174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel blue
> color sel royal blue
> color sel deep sky blue
> color sel blue
> color sel midnight blue
> color sel sky blue
> color sel dodger blue
> color sel medium blue
> color sel blue
> color sel medium blue
> color sel #0000fffa
> color sel #00007ffa
> color sel #5500fffa
> color sel #5555fffa
> color sel #0055fffa
> color sel #0055ff01
> color sel #0055ff0a
> color sel #0055ff64
> color sel #0055ff02
> color sel #0055ff19
> color sel #0055fffa
> color sel #0000fffa
> color sel #aaaa7ffa
> color sel #00007ffa
> color sel #00007f05
> color sel #00007f32
> color sel lime target ac
> color sel cyan target a
> color sel cornflower blue target a
> color sel blue target a
> color sel #00007f02
> color sel #00007f19
> color sel #00007ffa
> color sel #0000fffa
> color sel byhetero
> color sel #053061fa
> color sel #00007ffa
> color sel byhetero
> select clear
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> select : 174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ~label sel residues
> select clear
> lighting full
> graphics silhouettes false
> lighting simple
> lighting full
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #aa0000fa
> color sel byhetero
> color sel #b2182bfa
> color sel byhetero
> color sel #aa0000fa
> color sel byhetero
> color sel #a80000fa
> color sel #a60000fa
> color sel #9d0000fa
> color sel #990000fa
> color sel #960000fa
> color sel byhetero
> color sel #980000fa
> color sel #960000fa
> color sel #940000fa
> color sel #930000fa
> color sel byhetero
> select clear
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> lighting soft
> graphics silhouettes true
> graphics silhouettes false
> lighting full
> lighting simple
> lighting full
> lighting simple
> lighting full
> graphics silhouettes true
> graphics silhouettes false
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> set bgColor gray
> set bgColor black
> set bgColor white
> volume appearance airways
No volumes specified
> volume showOutlineBox true
No volumes specified
> volume region all imageMode "full region"
No volumes specified
> volume planes z style image imageMode "full region"
No volumes specified
> save C:\Users\User\Desktop\image1.png supersample 3
> volume showOutlineBox true
No volumes specified
> volume region all imageMode "full region"
No volumes specified
> view
> ui tool show "Side View"
> select : 303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> view sel
> select clear
> label delete residues
[Repeated 2 time(s)]
> ui mousemode right select
Drag select of 3 atoms, 3 bonds
> select clear
[Repeated 3 time(s)]Drag select of 87 atoms, 54 residues, 76 bonds
> select clear
> ui mousemode right translate
> ui mousemode right label
> label (#1::chain_id=' '&:304)
> label delete residues
> label (#1::chain_id=' '&:304)
> ui mousemode right "move label"
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
[Repeated 1 time(s)]
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> ui tool show "Color Actions"
> color sel blue target l
> select :174,176,185,198-201,237,259,260
152 atoms, 148 bonds, 10 residues, 1 model selected
> color sel medium blue target l
> color sel blue target l
> color sel midnight blue target l
> color sel blue target l
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code}
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 45
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 60
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 90
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 500
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 1
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 5
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 1
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.9
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 10 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 90 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 24 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 25 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 15 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 24 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 48 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 40 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 24 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> bold
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 20 height 0.8
> bold true
Expected a keyword
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 26 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 28 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 36 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 34 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 33 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 32 height 0.8
> label :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375 text
> {0.label_one_letter_code}{0.number}{0.insertion_code} size 30 height 0.8
> select :174,176,185,198-201,237,259,260,303,304,326,328,330,370-373,375
344 atoms, 339 bonds, 20 residues, 1 model selected
> select :304,326,328,330,370-373,375
171 atoms, 169 bonds, 9 residues, 1 model selected
> color sel red target l
> color sel tomato target l
> color sel crimson target l
> color sel maroon target l
> color sel red target l
> ui mousemode right "move label"
> select :303,304,326,328,330,370-373,375
192 atoms, 191 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel red target l
> select clear
[Repeated 1 time(s)]
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> ui mousemode right select
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select /?:260@OD1
1 atom, 1 residue, 1 model selected
> select add /?:303@OH
2 atoms, 2 residues, 1 model selected
> ui mousemode right distance
> distance /?:303@OH /?:303@CD1
Distance between /? TYR 303 OH and CD1: 3.688Å
> ~distance /?:303@OH /?:303@CD1
> distance /?:303@CD1 /?:260@OD1
Distance between /? TYR 303 CD1 and ASP 260 OD1: 5.811Å
> ~distance /?:303@CD1 /?:260@OD1
> select clear
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select add /?:260@OD1
2 atoms, 2 residues, 1 model selected
> ui mousemode right "link markers"
> ui mousemode right "mark point"
> marker #2 position 66.81,104.2,81.93 color yellow radius 1
> marker #2 position 66.86,103.9,81.8 color yellow radius 1
> marker #2 position 69.84,95.07,77.69 color yellow radius 1
> undo
[Repeated 1 time(s)]
> ui mousemode right "delete markers"
> marker delete #2:3
> marker delete #2:2
> marker delete #2:1
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> nucleotides atoms
> style nucleic stick
Changed 0 atom styles
> ui tool show Distances
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select /?:260@OD1
1 atom, 1 residue, 1 model selected
> select add /?:303@OH
2 atoms, 2 residues, 1 model selected
> ~select #2
2 atoms, 2 residues, 1 model selected
> select #2
Nothing selected
> hide #2 models
> show #2 models
> close #3
> close #2
> select /?:303@OH
1 atom, 1 residue, 1 model selected
> select add /?:260@OD2
2 atoms, 2 residues, 1 model selected
> distance /?:303@OH /?:260@OD2
Distance between /? TYR 303 OH and ASP 260 OD2: 2.644Å
> distance style symbol false
> distance style symbol true
> distance style decimalPlaces 2
> distance style decimalPlaces 1
> distance style decimalPlaces 0
> distance style decimalPlaces -1
Invalid "decimalPlaces" argument: Must be greater than or equal to 0
> distance style decimalPlaces 0
Must select one or more distances in the table
> ~distance /?:303@OH /?:260@OD2
> select clear
> ui tool show Contacts
> toolshed show
> select /?:371@NH2
1 atom, 1 residue, 1 model selected
> select add /?:259@OE2
2 atoms, 2 residues, 1 model selected
> ui tool show Distances
> distance /?:371@NH2 /?:259@OE2
Distance between /? ARG 371 NH2 and GLU 259 OE2: 3Å
> ui tool show "Selection Inspector"
> setattr sel g display false
Assigning display attribute to 1 item
> setattr sel g display true
Assigning display attribute to 1 item
> setattr sel g halfbond true
Assigning halfbond attribute to 1 item
> setattr sel g halfbond false
Assigning halfbond attribute to 1 item
> setattr sel g halfbond true
Assigning halfbond attribute to 1 item
> setattr sel g halfbond false
Assigning halfbond attribute to 1 item
> setattr sel g display false
Assigning display attribute to 1 item
> setattr sel g display true
Assigning display attribute to 1 item
> setattr =sel p display false
Assigning display attribute to 1 item
> setattr =sel p display true
Assigning display attribute to 1 item
> setattr =sel p display false
Assigning display attribute to 1 item
> setattr =sel p display true
Assigning display attribute to 1 item
> hide #2.1 models
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> select clear
> distance style color #5bff2e
> distance style color #54ff2e
> distance style color #4bff2f
> distance style color #3dff2f
> distance style color #2fff2f
> distance style color #32ff2f
> distance style color #38ff2e
> distance style color #46ff2a
> distance style color #58ff25
> distance style color #67ff21
> distance style color #67ff20
> distance style color #6bff08
> distance style color #70ff03
> distance style color #70ff02
> distance style color #6fff00
> distance style color #66ff00
> distance style color #432aff
> distance style color #4a2aff
> distance style color #4929ff
> distance style color #4d29ff
> distance style color #5227ff
> distance style color #5926ff
> distance style color #6122ff
> distance style color #681dff
> distance style color #6d19ff
> distance style color #7315ff
> distance style color #7715ff
> distance style color #7c10ff
> distance style color #7d0bff
> distance style color #8307ff
> distance style color #8103ff
> distance style color #8001ff
> distance style color #8000ff
> distance style color #7700ff
> distance style color #7300ff
> distance style color #6a00ff
> distance style color #7300ff
> distance style color #7700ff
> distance style color #8000ff
> distance style color #8800ff
> distance style color #a200ff
> distance style color #bf00ff
> distance style color #d900ff
> distance style color #f700ff
> distance style color #ff02f2
> distance style color #ff05e6
> distance style color #ff06d5
> distance style color #ff0aca
> distance style color #ff0ebf
> distance style color #ff10b3
> distance style color #ff15ad
> distance style color #ff1ca8
> distance style color #ff20a6
> distance style color #ff229f
> distance style color #ff27a1
> distance style color #ff2ba3
> distance style color #ff2f9e
> distance style color #ff34a0
> distance style color #ff38a2
> distance style color #ff39a3
> distance style color #ff3ca4
> distance style color #ff3da4
> distance style color #ff3ea5
> distance style color #ff40a6
> distance style color #ff40ac
> distance style color #ff3eab
> distance style color #ff3eb2
> distance style color #ff3db1
> distance style color #ff3cb1
> distance style color #ff38af
> distance style color #ff34ae
> distance style color #ff33ad
> distance style color #ff30ac
> distance style color #ff2fac
> distance style color #ff2faf
> distance style color #ff2fbd
> distance style color #ff30bd
> distance style color #ff35eb
> distance style color #f83aff
> distance style color #e23cff
> distance style color #c940ff
> distance style color #b742ff
> distance style color #9d47ff
> distance style color #884cff
> distance style color #7553ff
> distance style color #6b57ff
> distance style color #655aff
> distance style color #5e5eff
> distance style color #626aff
> distance style color #6973ff
> distance style color #6f7dff
> distance style color #6f82ff
> distance style color #788cff
> distance style color #7e96ff
> distance style color #859fff
> distance style color #8ca5ff
> distance style color #93acff
> distance style color #99b1ff
> distance style color #9eb5ff
> distance style color #a5bdff
> distance style color #abc1ff
> distance style color #afc4ff
> distance style color #b0c5ff
> distance style color #b7caff
> distance style color #b8cbff
> distance style color #c0cfff
> distance style color #c6d0ff
> distance style color #cdd4ff
> distance style color #d3d5ff
> distance style color #dddcff
> distance style color #e8e4ff
> distance style color #f0ebff
> distance style color #f6f0ff
> distance style color #faf4ff
> distance style color #fdf9ff
> distance style color #fffdff
> distance style color white
> distance style color #fffcfc
> distance style color lavenderblush
> distance style color #ffeef5
> distance style color #efc6ff
> distance style color #a9b9ff
> distance style color #8bffe6
> distance style color #89ffdc
> distance style color #e2ff60
> distance style color #ff8349
> distance style color #ff3737
> distance style color #ff2626
> distance style color #ff1717
> distance style color #ff0c0c
> distance style color #ff0b0b
> distance style color red
> distance style color #ff0101
> distance style color #ff0202
> distance style color #ff0606
> distance style color #ff0c0c
> distance style color #ff1717
> distance style color #ff1818
> distance style color #ff2b2b
> distance style color #ff3a3a
> distance style color #ff4949
> distance style color #ff5353
> distance style color #ff5959
> distance style color #ff5e5e
> distance style color #ff6161
> distance style color #ff6262
> distance style color #ff6363
> distance style color #ff6565
> distance style color #ff6363
> distance style color #ff6262
> distance style color #ff6060
> distance style color #ff5d5d
> distance style color #ff5959
> distance style color #ff5858
> distance style color #ff4e4e
> distance style color #ff4242
> distance style color #ff3333
> distance style color #ff2222
> distance style color #ff1414
> distance style color #ff0606
> distance style color red
> distance style color #ff0202
> distance style color #ff1313
> distance style color #ff3c3c
> distance style color #ff6262
> distance style color #ff8989
> distance style color #ffc0c0
> distance style color #ffdbdb
> distance style color #ffdcdc
> distance style color white
> distance style color #fffdfd
> distance style color #fff6f6
> distance style color #ffeeee
> distance style color #ffe0e1
> distance style color #ffd3d4
> distance style color #ffc7c8
> distance style color #ffbcbd
> distance style color #ffb0b1
> distance style color #ffafb0
> distance style color #ffa5a6
> distance style color #ff9799
> distance style color #ff898b
> distance style color #ff797b
> distance style color #ff6a6c
> distance style color #ff5a5d
> distance style color #ff4a4d
> distance style color #ff3a3d
> distance style color #ff2b2f
> distance style color #ff2327
> distance style color #ff1418
> distance style color #ff070b
> distance style color #ff0004
> distance style color #ff000d
> distance style color #ff0011
> distance style color #ff0019
> distance style color #ff0022
> distance style color #ff0026
> distance style color #ff002f
> distance style color #ff0037
> distance style color #ff003c
> distance style color #ff0044
> distance style color #ff004c
> distance style color #ff0051
> distance style color #ff0059
> distance style color #ff0062
> distance style color #ff006f
> distance style color #ff0073
> distance style color #ff0099
> distance style color #ff00d0
> distance style color #e100ff
> distance style color #6600ff
> distance style color #0022ff
> distance style color #00b3ff
> distance style color #00ffaa
> distance style color #00ff9d
> distance style color lime
> distance style color #a6ff00
> distance style color #ffcc00
> distance style color #ff5500
> distance style color #ff1100
> distance style color red
> distance style color #fd0000
> distance style color #fe0000
> distance style color #fd0000
> distance style color #fa0000
> distance style color #f80000
> distance style color #ef0000
> distance style color #e30000
> distance style color #e20000
> distance style color #c70000
> distance style color #ad0000
> distance style color #900000
> distance style color #6c0000
> distance style color #4b0000
> distance style color #2a0000
> distance style color #0d0000
> distance style color #0c0000
> distance style color black
> distance style color #000200
> distance style color #000300
> distance style color #000400
> distance style color #000600
> distance style color #000700
> distance style color #000901
> distance style color #001101
> distance style color #001d02
> distance style color #002a03
> distance style color #007308
> distance style color #007808
> distance style color #007908
> distance style color #008b09
> distance style color #00990a
> distance style color #00a50b
> distance style color #00b00c
> distance style color #00be0d
> distance style color #00c80d
> distance style color #00d30e
> distance style color #00da0f
> distance style color #00e10f
> distance style color #00e60f
> distance style color #00ea10
> distance style color #00ec10
> distance style color #00f010
> distance style color #00f310
> distance style color #00f410
> distance style color #00f710
> distance style color #00fa11
> distance style color #00fd11
> distance style color #00ff11
> distance style color #29ff11
> distance style color #2cff14
> distance style color #27ff18
> distance style color #28ff19
> distance style color #21ff21
> distance style color #27ff2e
> distance style color #2aff38
> distance style color #2eff3c
> distance style color #31ff42
> distance style color #33ff44
> distance style color #34ff45
> distance style color #35ff42
> distance style color #37ff3e
> distance style color #38ff3f
> distance style color #39ff39
> distance style color #44ff3a
> distance style color #4aff3d
> distance style color #51ff3e
> distance style color #5aff41
> distance style color #5eff45
> distance style color #64ff49
> distance style color #66ff4b
> distance style color #6aff50
> distance style color #73ff54
> distance style color #76ff57
> distance style color #7aff5c
> distance style color #7cff5e
> distance style color #7dff60
> distance style color #7dff66
> distance style color #79ff6a
> distance style color #7dff6f
> distance style color #7bff72
> distance style color #7bff74
> distance style color #79ff77
> distance style color #7aff78
> distance style color #7dff81
> distance style color #82ff8a
> distance style color #86ff90
> distance style color #89ff9b
> distance style color #8bff9e
> distance style color #8fffa5
> distance style color #90ffaa
> distance style color #92ffad
> distance style color #94ffaf
> distance style color #94ffb2
> distance style color #94ffb6
> distance style color #94ffb8
> distance style color #92ffbf
> distance style color #8fffc1
> distance style color #8bffc9
> distance style color #86ffd1
> distance style color #82ffd5
> distance style color #80ffdb
> distance style color #80ffdf
> distance style color #7effdf
> distance style color #7dffdf
> distance style color #7dffe3
> distance style color #7cffe3
> distance style color #7bffe2
> distance style color #79ffe4
> distance style color #79ffe9
> distance style color #78ffeb
> distance style color #77ffeb
> distance style color #75ffea
> distance style color #74ffea
> distance style color #73ffea
> distance style color #72ffef
> distance style color #72fff3
> distance style color #70fff3
> distance style color #70ffee
> distance style color #70ffea
> distance style color #70ffe7
> distance style color #70ffe2
> distance style color #70ffe0
> distance style color #72ffdc
> distance style color #72ffd7
> distance style color #73ffd5
> distance style color #74ffd5
> distance style color #77ffcd
> distance style color #78ffcb
> distance style color #78ffc7
> distance style color #79ffc7
> distance style color #7bffc4
> distance style color #7cffc4
> distance style color #7dffc2
> distance style color #7dffbe
> distance style color #80ffc0
> distance style color #81ffbc
> distance style color #83ffbb
> distance style color #85ffbc
> distance style color #85ffb8
> distance style color #86ffb8
> distance style color #86ffb6
> distance style color #87ffb7
> distance style color #89ffb8
> distance style color #8affb5
> distance style color #8bffb6
> distance style color #8bffac
> distance style color #8bffa8
> distance style color #8bffa6
> distance style color #8bffa2
> distance style color #8bff9e
> distance style color #8cff9d
> distance style color #8eff97
> distance style color #8fff8f
> distance style color #97ff90
> distance style color #9dff92
> distance style color #a1ff92
> distance style color #a7ff93
> distance style color #acff93
> distance style color #b1ff94
> distance style color #b7ff95
> distance style color #baff95
> distance style color #beff95
> distance style color #bfff97
> distance style color #c1ff97
> distance style color #c4ff97
> distance style color #c6ff97
> distance style color #c9ff97
> distance style color #cdff97
> distance style color #ceff97
> distance style color #cfff98
> distance style color #d2ff98
> distance style color #d6ff98
> distance style color #d8ff98
> distance style color #dbff98
> distance style color #dbff97
> distance style color #deff97
> distance style color #ddff95
> distance style color #ddff94
> distance style color #ddff93
> distance style color #dcff92
> distance style color #dcff90
> distance style color #dcff8f
> distance style color #dbff8e
> distance style color #daff8a
> distance style color #d9ff87
> distance style color #d8ff83
> distance style color #d7ff82
> distance style color #d3ff81
> distance style color #d3ff80
> distance style color #d2ff7e
> distance style color #d2ff7d
> distance style color #d1ff7c
> distance style color #d1ff7b
> distance style color #d0ff79
> distance style color #cfff77
> distance style color #cfff75
> distance style color #ceff72
> distance style color #d2ff70
> distance style color #d1ff6f
> distance style color #d0ff6b
> distance style color #d0ff6a
> distance style color #d0ff69
> distance style color #cfff66
> distance style color #ceff63
> distance style color #cdff62
> distance style color #cdff61
> distance style color #ccff5e
> distance style color #ccff5d
> distance style color #cbff5c
> distance style color #caff59
> distance style color #caff58
> distance style color #caff57
> distance style color #c9ff55
> distance style color #c8ff50
> distance style color #c7ff4e
> distance style color #c6ff4a
> distance style color #c5ff47
> distance style color #c4ff46
> distance style color #c3ff42
> distance style color #c3ff41
> distance style color #c3ff40
> distance style color #c2ff3e
> distance style color #bbff3e
> distance style color #bbff3d
> distance style color #bbff3c
> distance style color #baff3a
> distance style color #baff39
> distance style color #b9ff38
> distance style color #b3ff38
> distance style color #9fff39
> distance style color #3dff64
> distance style color #3dff6e
> distance style color #3dff7e
> distance style color #3dff8e
> distance style color #3dff9e
> distance style color #3dffa4
> distance style color #3effc5
> distance style color #3effdf
> distance style color #40fff2
> distance style color #40fff9
> distance style color #40ecff
> distance style color #40d6ff
> distance style color #40c6ff
> distance style color #40b6ff
> distance style color #3eabff
> distance style color #3ea5ff
> distance style color #3da1ff
> distance style color #3d9bff
> distance style color #3d94ff
> distance style color #3d91ff
> distance style color #3c8aff
> distance style color #3c87ff
> distance style color #3c8aff
> distance style color #3d8bff
> distance style color #3d91ff
> distance style color #3e92ff
> distance style color #409cff
> distance style color #42a4ff
> distance style color #43aeff
> distance style color #46b8ff
> distance style color #49bfff
> distance style color #4ac6ff
> distance style color #4bc9ff
> distance style color #4ccfff
> distance style color #4ed6ff
> distance style color #4fd9ff
> distance style color #50dfff
> distance style color #50e2ff
> distance style color #52e2ff
> distance style color #52e8ff
> distance style color #53e8ff
> distance style color #53e2ff
> distance style color #54e0ff
> distance style color #55ccff
> distance style color #57bcff
> distance style color #58aeff
> distance style color #58a3ff
> distance style color #5993ff
> distance style color #598eff
> distance style color #5977ff
> distance style color #5961ff
> distance style color #6459ff
> distance style color #6c59ff
> distance style color #7559ff
> distance style color #7a59ff
> distance style color #8059ff
> distance style color #8359ff
> distance style color #895aff
> distance style color #915aff
> distance style color #985cff
> distance style color #a15dff
> distance style color #a95dff
> distance style color #ae5dff
> distance style color #af5eff
> distance style color #b45eff
> distance style color #b560ff
> distance style color #b760ff
> distance style color #bd60ff
> distance style color #c562ff
> distance style color #cb63ff
> distance style color #d063ff
> distance style color #d365ff
> distance style color #d466ff
> distance style color #d966ff
> distance style color #d967ff
> distance style color #da69ff
> distance style color #d569ff
> distance style color #d56bff
> distance style color #cf6fff
> distance style color #cc73ff
> distance style color #ca75ff
> distance style color #c778ff
> distance style color #c379ff
> distance style color #c27cff
> distance style color #c27dff
> distance style color #c080ff
> distance style color #c182ff
> distance style color #c183ff
> distance style color #c089ff
> distance style color #c08cff
> distance style color #c18fff
> distance style color #c493ff
> distance style color #c697ff
> distance style color #c799ff
> distance style color #c99cff
> distance style color #c99dff
> distance style color #ca9eff
> distance style color #cba0ff
> distance style color #cca0ff
> distance style color #cda1ff
> distance style color #d0a1ff
> distance style color #d1a2ff
> distance style color #d2a4ff
> distance style color #d2a5ff
> distance style color #d5a5ff
> distance style color #d5a6ff
> distance style color #d7a6ff
> distance style color #d7a7ff
> distance style color #d8a9ff
> distance style color #dba9ff
> distance style color #daa7ff
> distance style color #dda6ff
> distance style color #e3a0ff
> distance style color #e998ff
> distance style color #ed92ff
> distance style color #ee8eff
> distance style color #f587ff
> distance style color #f782ff
> distance style color #fb7cff
> distance style color #fa75ff
> distance style color #fa6fff
> distance style color #ff69ff
> distance style color #ff66ff
> distance style color #ff61ff
> distance style color #ff5aff
> distance style color #ff53ff
> distance style color #ff4eff
> distance style color #ff49ff
> distance style color #f946ff
> distance style color #f943ff
> distance style color #f942ff
> distance style color #f941ff
> distance style color #f240ff
> distance style color #f23eff
> distance style color #f23dff
> distance style color #f23aff
> distance style color #f238ff
> distance style color #f131ff
> distance style color #f12aff
> distance style color #f022ff
> distance style color #f01cff
> distance style color #ef15ff
> distance style color #f715ff
> distance style color #f70fff
> distance style color #f708ff
> distance style color #f705ff
> distance style color #f702ff
> distance style color #f701ff
> distance style color #f700ff
> distance style color #ee00ff
> distance style color #ea00ff
> distance style color #e100ff
> distance style color #d900ff
> distance style color #d400ff
> distance style color #cc00ff
> distance style color #c800ff
> distance style color #bf00ff
> distance style color #b700ff
> distance style color #aa00ff
> distance style color #8c00ff
> distance style color #6a00ff
> distance style color #5100ff
> distance style color #3c00ff
> distance style color #2b00ff
> distance style color #2002ff
> distance style color #2205ff
> distance style color #1808ff
> distance style color #1014ff
> distance style color #1420ff
> distance style color #1c33ff
> distance style color #2243ff
> distance style color #2957ff
> distance style color #2e66ff
> distance style color #3474ff
> distance style color #3776ff
> distance style color #3d87ff
> distance style color #4294ff
> distance style color #479aff
> distance style color #4ca8ff
> distance style color #4faaff
> distance style color #54b5ff
> distance style color #55b5ff
> distance style color #58bcff
> distance style color #5ac0ff
> distance style color #5cc1ff
> distance style color #5dc6ff
> distance style color #61cdff
> distance style color #62cdff
> distance style color #65d1ff
> distance style color #67d6ff
> distance style color #69d7ff
> distance style color #6bd8ff
> distance style color #6cd8ff
> distance style color #6ed8ff
> distance style color #6fd9ff
> distance style color #70d9ff
> distance style color #72d9ff
> distance style color #73daff
> distance style color #73deff
> distance style color #75dfff
> distance style color #77e2ff
> distance style color #79e2ff
> distance style color #7be2ff
> distance style color #7ce3ff
> distance style color #7ce7ff
> distance style color #7ee7ff
> distance style color #81e8ff
> distance style color #82e8ff
> distance style color #83e8ff
> distance style color #85e9ff
> distance style color #87e5ff
> distance style color #89e0ff
> distance style color #8bdcff
> distance style color #8cdbff
> distance style color #8fd8ff
> distance style color #90d3ff
> distance style color #93d0ff
> distance style color #94cdff
> distance style color #95ccff
> distance style color #95c8ff
> distance style color #97c6ff
> distance style color #98c6ff
> distance style color #99c7ff
> distance style color #99c5ff
> distance style color #9bc6ff
> distance style color #9bc3ff
> distance style color #9cc4ff
> distance style color #9cc2ff
> distance style color #9cbfff
> distance style color #9dbfff
> distance style color #9ebdff
> distance style color #a1bdff
> distance style color #a2beff
> distance style color #a2bbff
> distance style color #a2beff
> distance style color #a1bfff
> distance style color #a0c4ff
> distance style color #9dc7ff
> distance style color #9dccff
> distance style color #9cd1ff
> distance style color #9bd4ff
> distance style color #99d6ff
> distance style color #99d8ff
> distance style color #98d8ff
> distance style color #98dbff
> distance style color #98deff
> distance style color #97deff
> distance style color #97e0ff
> distance style color #95dfff
> distance style color #95e3ff
> distance style color #94e2ff
> distance style color #93e2ff
> distance style color #93e6ff
> distance style color #92e6ff
> distance style color #92e7ff
> distance style color #90e7ff
> distance style color #90ebff
> distance style color #8feaff
> distance style color #8fecff
> distance style color #8ff0ff
> distance style color #8ef0ff
> distance style color #8ef4ff
> distance style color #8cf5ff
> distance style color #8bf9ff
> distance style color #8affff
> distance style color #89fff7
> distance style color #89fff5
> distance style color #87fff1
> distance style color #86ffed
> distance style color #86ffeb
> distance style color #86ffe7
> distance style color #85ffe5
> distance style color #83ffdc
> distance style color #83ffda
> distance style color #83ffd6
> distance style color #82ffd5
> distance style color #82ffd1
> distance style color #82ffd5
> distance style color #82ffda
> distance style color #82ffdc
> distance style color #82ffe0
> distance style color #82ffe4
> distance style color #81ffe4
> distance style color #80ffe3
> distance style color #7effe5
> distance style color #7dffe9
> distance style color #7cffeb
> distance style color #79ffeb
> distance style color #78ffeb
> distance style color #75ffea
> distance style color #74ffea
> distance style color #72ffea
> distance style color #70ffea
> distance style color #6fffe9
> distance style color #6effe9
> distance style color #6cffe9
> distance style color #6bffe9
> distance style color #6affe9
> distance style color #69ffe9
> distance style color #69ffe6
> distance style color #67ffe6
> distance style color #65ffe5
> distance style color #63ffe0
> distance style color #61ffdf
> distance style color #5dffdc
> distance style color #5affdb
> distance style color #58ffdb
> distance style color #57ffdb
> distance style color #57ffdd
> distance style color #57ffe6
> distance style color #54ffeb
> distance style color #53fff4
> distance style color #52ffff
> distance style color #50fcff
> distance style color #4ff0ff
> distance style color #4eedff
> distance style color #4be7ff
> distance style color #4be1ff
> distance style color #4ae1ff
> distance style color #49e1ff
> distance style color #47e6ff
> distance style color #47edff
> distance style color #46ecff
> distance style color #46f0ff
> distance style color #45efff
> distance style color #45f6ff
> distance style color #45fcff
> distance style color #45ffff
> distance style color #47fff9
> distance style color #47fff3
> distance style color #4affea
> distance style color #4fffe2
> distance style color #50ffd9
> distance style color #55ffd5
> distance style color #57ffcf
> distance style color #5cffc9
> distance style color #61ffc5
> distance style color #62ffc3
> distance style color #63ffc3
> distance style color #65ffc4
> distance style color #67ffc0
> distance style color #69ffc1
> distance style color #69ffbb
> distance style color #6affbc
> distance style color #6affb9
> distance style color #6affb4
> distance style color #6affb0
> distance style color #6affad
> distance style color #6affa8
> distance style color #6affa6
> distance style color #6affa1
> distance style color #6aff9c
> distance style color #6bff95
> distance style color #6bff90
> distance style color #6cff8e
> distance style color #6cff89
> distance style color #6eff8b
> distance style color #6eff86
> distance style color #6eff84
> distance style color #6eff7f
> distance style color #6eff7a
> distance style color #6eff78
> distance style color #6eff73
> distance style color #6fff74
> distance style color #6fff79
> distance style color #6fff7b
> distance style color #70ff7c
> distance style color #70ff81
> distance style color #72ff82
> distance style color #72ff87
> distance style color #72ff89
> distance style color #73ff8a
> distance style color #73ff8f
> distance style color #74ff94
> distance style color #75ff95
> distance style color #75ff98
> distance style color #77ff99
> distance style color #79ffa3
> distance style color #7cffa5
> distance style color #7effa9
> distance style color #80ffaf
> distance style color #81ffaf
> distance style color #82ffb0
> distance style color #82ffb4
> distance style color #83ffb5
> distance style color #85ffb8
> distance style color #85ffbc
> distance style color #86ffbc
> distance style color #87ffbd
> distance style color #8affbf
> distance style color #8fffc3
> distance style color #90ffc8
> distance style color #94ffca
> distance style color #97ffce
> distance style color #99ffd1
> distance style color #9bffd5
> distance style color #9cffd6
> distance style color #9effd7
> distance style color #a1ffdb
> distance style color #a2ffdb
> distance style color #a2ffdd
> distance style color #a2ffe0
> distance style color #a2ffe5
> distance style color #a2ffe8
> distance style color #a2ffec
> distance style color #a1fff1
> distance style color #a0fff9
> distance style color #a0ffff
> distance style color #9efdff
> distance style color #9efaff
> distance style color #9ef7ff
> distance style color #9df7ff
> distance style color #9df5ff
> distance style color #9df2ff
> distance style color #9defff
> distance style color #9cefff
> color #2 #9cefff models transparency 0
> color #2.1 #9cefff models transparency 0
> ~distance /?:371@NH2 /?:259@OE2
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
> ui tool show "Build Structure"
> resrenumber
Unknown command: resrenumber
> resrenumber :
Unknown command: resrenumber :
> ui tool show "Show Sequence Viewer"
> sequence chain /?
Destroying pre-existing alignment with identifier 1/
Alignment identifier is 1/
> help help:user
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting.cxs"
——— End of log from Wed Jun 1 13:35:48 2022 ———
opened ChimeraX session
> ui tool show Distances
> distance
Missing or invalid "objects" argument: empty atom specifier
> distance 185
Missing or invalid "objects" argument: invalid objects specifier
> select clear
> select add /?:259@OE1
1 atom, 1 residue, 1 model selected
> select /?:371@NH2
1 atom, 1 residue, 1 model selected
> select add /?:259@OE1
2 atoms, 2 residues, 1 model selected
> select subtract /?:259@OE1
1 atom, 1 residue, 1 model selected
> select add /?:259@OE1
2 atoms, 2 residues, 1 model selected
> distance /?:371@NH2 /?:259@OE1
Distance between /? ARG 371 NH2 and GLU 259 OE1: 2.998Å
> distance :185@OH :326@OD1
Distance between /? TYR 185 OH and ASP 326 OD1: 2.735Å
> ~distance /?:185@OH /?:326@OD1
> distance style color #9cefff
> hide #2.1 models
> color #2 #9cefff models transparency 0
> select clear
> color #2 #ffd670 models transparency 0
> color #2 #ffb75e models transparency 0
> color #2 #fcff54 models transparency 0
> color #2 #aeff70 models transparency 0
> color #2 #94ff74 models transparency 0
> color #2 #98ff81 models transparency 0
> color #2 #a9ff8f models transparency 0
> color #2 #556cff models transparency 0
> color #2 #ff8082 models transparency 0
> color #2 #ff6f71 models transparency 0
> color #2 #ff2f78 models transparency 0
> color #2 #794cff models transparency 0
> color #2 #4eff71 models transparency 0
> color #2 #97ff77 models transparency 0
> color #2 #ffe865 models transparency 0
> color #2 #ffff14 models transparency 0
> color #2 #2cffa7 models transparency 0
> color #2 #26dd91 models transparency 0
> distance style color #26dd91
> distance :198@OD1 :304@NE1
Distance between /? ASN 198 OD1 and TRP 304 NE1: 3.556Å
> show #2.1 models
> hide #2.1 models
> show #2.1 models
> hide #2.1 models
> color #2 #26dd91 models transparency 0
> color #2.1 #26dd91 models transparency 0
> distance :198@OD1 :370@NH2
Distance between /? ASN 198 OD1 and ARG 370 NH2: 3.028Å
> distance :198@ND2 :372@OD1
Distance between /? ASN 198 ND2 and ASN 372 OD1: 2.885Å
> distance :199@O :370@NH1
Distance between /? THR 199 O and ARG 370 NH1: 2.743Å
> distance :200@O :370@NH1
Distance between /? GLU 200 O and ARG 370 NH1: 2.794Å
> distance :200@O :375@ND2
Distance between /? GLU 200 O and ASN 375 ND2: 3.704Å
> distance :200@OE1 :330@NE
Distance between /? GLU 200 OE1 and ARG 330 NE: 4.837Å
> distance :200@OE1 :330@NH2
Distance between /? GLU 200 OE1 and ARG 330 NH2: 4.942Å
> distance :200@OE2 :330@NE
Distance between /? GLU 200 OE2 and ARG 330 NE: 2.956Å
> distance :200@OE2 :330@NH2
Distance between /? GLU 200 OE2 and ARG 330 NH2: 2.810Å
> distance :201@O :375@ND2
Distance between /? ASP 201 O and ASN 375 ND2: 3.900Å
> ~distance /?:371@NH2 /?:259@OE1
> distance :237@OD1 :373@NE1
Distance between /? ASP 237 OD1 and TRP 373 NE1: 2.862Å
> distance :259@O :3372@ND2
Expected exactly two atoms and/or measurable objects (e.g. axes, planes), got
1
> distance :259@O :372@ND2
Distance between /? GLU 259 O and ASN 372 ND2: 3.009Å
> distance :259@OE1 :371@NH1
Distance between /? GLU 259 OE1 and ARG 371 NH1: 2.656Å
> distance :259@OE1 :371@NH2
Distance between /? GLU 259 OE1 and ARG 371 NH2: 2.998Å
> distance :259@OE2 :371@NH1
Distance between /? GLU 259 OE2 and ARG 371 NH1: 3.381Å
> distance :259@OE2 :371@NH2
Distance between /? GLU 259 OE2 and ARG 371 NH2: 2.664Å
> distance :260@OD2 :303@OH
Distance between /? ASP 260 OD2 and TYR 303 OH: 2.644Å
> hide #!2 models
> show #!2 models
> color #2 #26dd91 models transparency 0
> show #2.1 models
> hide #2.1 models
> ~label #1#!2 residues
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting_H1.cxs"
[Repeated 1 time(s)]
——— End of log from Wed Jun 1 14:06:17 2022 ———
opened ChimeraX session
> lighting shadows false
> lighting shadows true
> lighting shadows false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> lighting soft
> graphics silhouettes true
> lighting full
> graphics silhouettes false
> lighting simple
> lighting full
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> graphics silhouettes false
> lighting flat
> graphics silhouettes false
> lighting soft
> lighting flat
> lighting full
> graphics silhouettes false
> ui tool show "Side View"
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> save "F:/Project Kun_BEZ
> md/0_TcdB_1_Bez/4.Analyze/hbond_40/1_oct8/interacting_H1.cxs"
[Repeated 2 time(s)]
——— End of log from Wed Jun 1 14:15:33 2022 ———
opened ChimeraX session
OpenGL version: 3.3.0 NVIDIA 511.79
OpenGL renderer: NVIDIA GeForce RTX 2060/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: H370AORUSGAMING3
OS: Microsoft Windows 10 Home (Build 19044)
Memory: 8,518,004,736
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8700 CPU @ 3.20GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
1.3