Crash using File→Open on Windows and/or in return statement

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraXWindows fatal exception:  code 0x18001010e.

3\bin\Windows fatal exception: lcode 0xi8001010eb

\sWindows fatal exception: icode 0xt8001010ee

-pWindows fatal exception: acode 0xc8001010ek

agWindows fatal exception: ecode 0xs8001010e\

chWindows fatal exception: icode 0xm8001010ee

raWindows fatal exception: xcode 0x\8001010eu

i\Windows fatal exception: gcode 0xu8001010ei

.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\liWindows fatal exception: bcode 0x\8001010es

ite-pWindows fatal exception: acode 0xc8001010ek

ageWindows fatal exception: scode 0x\8001010e

Windows fatal exception: Windows fatal exception: Ccode 0xhcode 0x8001010ei

8001010emWindows fatal exception: 

code 0xe8001010eWindows fatal exception: 

rcode 0xWindows fatal exception: a8001010ecode 0xX8001010e_



mWindows fatal exception: aWindows fatal exception: code 0xcode 0x8001010e8001010ei

n

.Windows fatal exception: pcode 0xWindows fatal exception: ycode 0x8001010e"8001010e, line 

867 in 

iWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e

8001010en

itWindows fatal exception: 
code 0x  File 8001010e"

C:\Windows fatal exception: Pcode 0xr8001010eo

gram FileWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aXWindows fatal exception:  code 0x18001010e.

3Windows fatal exception: \code 0x8001010e

biWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: b\code 0xs8001010ei

te-Windows fatal exception: pcode 0xackag8001010ee

s\Windows fatal exception: Ccode 0xh8001010ei

meraX_main.Windows fatal exception: pcode 0xy8001010e"

, line 1018 in Windows fatal exception: 
code 0x  File 8001010e"

C:Windows fatal exception: \code 0xP8001010er

ogWindows fatal exception: code 0x8001010er

amWindows fatal exception:  code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eCWindows fatal exception: hcode 0xi8001010em



eWindows fatal exception: Windows fatal exception: rcode 0xacode 0xX8001010e 

8001010e1

.Windows fatal exception: 3code 0x\8001010eb

inWindows fatal exception: \code 0xl8001010ei

b\Windows fatal exception: rcode 0xu8001010en

pyWindows fatal exception: .code 0xp8001010ey

", line Windows fatal exception: 87code 0x in 8001010e_

ruWindows fatal exception: ncode 0x_8001010ec

ode
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0xWindows fatal exception: 0000215ccode 0x (most recent call first):
8001010e  File 

"C:\PWindows fatal exception: rcode 0xo8001010eg

ramWindows fatal exception:  code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aXWindows fatal exception:  code 0x18001010e.

3\Windows fatal exception: bcode 0xi8001010en

\lWindows fatal exception: icode 0xb8001010e\

site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_commandWindows fatal exception: \code 0xd8001010ei

alog.pyWindows fatal exception: "code 0x, line 8001010e135

 in sWindows fatal exception: hcode 0x8001010e

Windows fatal exception: ocode 0xw8001010e_

opWindows fatal exception: ecode 0xn8001010e_

fiWindows fatal exception: lcode 0xe8001010e_

diWindows fatal exception: acode 0xl8001010eo

g
  File Windows fatal exception: "code 0xC8001010e:

\Program Files\ChimeraX 1.3\Windows fatal exception: bcode 0xi8001010en

\lib\Windows fatal exception: scode 0xi8001010et

e-Windows fatal exception: pcode 0xa8001010ec

kaWindows fatal exception: gcode 0xe8001010es

\cWindows fatal exception: hcode 0xi8001010em

erWindows fatal exception: acode 0xx8001010e\

opWindows fatal exception: ecode 0xn8001010e_

coWindows fatal exception: mcode 0xm8001010ea

nd\dialog.py", line 107 in 
  File "CWindows fatal exception: :code 0x\8001010eProgram

 FilWindows fatal exception: ecode 0xs8001010e\

ChimWindows fatal exception: ecode 0xr8001010ea

X 1Windows fatal exception: .code 0x38001010e\

binWindows fatal exception: \code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0xl8001010ei

b\site-packaWindows fatal exception: gcode 0xe8001010es

\chWindows fatal exception: imcode 0xe8001010er

axWindows fatal exception: \code 0xu8001010ei

\gWindows fatal exception: ucode 0x8001010e

iWindows fatal exception: .code 0xp8001010ey

", line Windows fatal exception: 301code 0x in 8001010ee

veWindows fatal exception: ncode 0xt8001010e_

loWindows fatal exception: ocode 0xp8001010e


  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\PrograWindows fatal exception: mcode 0x 8001010eF

ilesWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ecode 0xr8001010ea

X Windows fatal exception: 1code 0x.8001010e3

\bWindows fatal exception: icode 0xn8001010e\

liWindows fatal exception: bcode 0x\8001010es

itWindows fatal exception: ecode 0x-8001010ep

acWindows fatal exception: kcode 0xa8001010eg

es\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x0000215c (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\atomic\molc.py", line 323 in pointer
Windows fatal exception: access violation

===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> ui tool show AlphaFold

> alphafold predict
> MGSSHHHHHHSSGLVPRGSHMVDNKFNKERVIAIGEIMRLPNLNSLQVVAFINSLRDDPSQSANLLAEAKKLNDAQAPKGGGGSGGGGSGGGGSGGGGSVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK

Running AlphaFold prediction  

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2b87.pdb format pdb

2b87.pdb title:  
Structural basis for molecular recognition In an affibody:affibody complex
[more info...]  
  
Chain information for 2b87.pdb  
---  
Chain | Description | UniProt  
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A
1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A 1.21/A 1.22/A 1.23/A
1.24/A 1.25/A 1.26/A 1.27/A 1.28/A 1.29/A 1.30/A 1.31/A 1.32/A 1.33/A 1.34/A
1.35/A 1.36/A 1.37/A 1.38/A 1.39/A 1.40/A | ztaq affibody | Q70AB8_STAAU  
1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.12/B
1.13/B 1.14/B 1.15/B 1.16/B 1.17/B 1.18/B 1.19/B 1.20/B 1.21/B 1.22/B 1.23/B
1.24/B 1.25/B 1.26/B 1.27/B 1.28/B 1.29/B 1.30/B 1.31/B 1.32/B 1.33/B 1.34/B
1.35/B 1.36/B 1.37/B 1.38/B 1.39/B 1.40/B | ANTI-ztaq affibody | Q70AB8_STAAU  
  

> delete /B

> delete /1.2-1.40

Missing or invalid "atoms" argument: only initial part "/1" of atom specifier
valid  

> delete /1.2/B-1.40/B

Missing or invalid "atoms" argument: only initial part "/1" of atom specifier
valid  

> delete /1.2/A-1.40/A

Missing or invalid "atoms" argument: only initial part "/1" of atom specifier
valid  

> delete /1.2

Missing or invalid "atoms" argument: only initial part "/1" of atom specifier
valid  

> delete /1.2A

Missing or invalid "atoms" argument: only initial part "/1" of atom specifier
valid  

> color bfactor

36520 atoms, 2320 residues, atom bfactor range 0 to 0  

> show atoms

> color bfactor

36520 atoms, 2320 residues, atom bfactor range 0 to 0  

> hide cartoons

> hide atoms

> show cartoons

> ui tool show "Side View"

> view

> view orient

> ui tool show "Side View"

> select
> #1.1/A#1.2/A#1.3/A#1.4/A#1.5/A#1.6/A#1.7/A#1.8/A#1.9/A#1.10/A#1.11/A#1.12/A#1.13/A#1.14/A#1.15/A#1.16/A#1.17/A#1.18/A#1.19/A#1.20/A#1.21/A#1.22/A#1.23/A#1.24/A#1.25/A#1.26/A#1.27/A#1.28/A#1.29/A#1.30/A#1.31/A#1.32/A#1.33/A#1.34/A#1.35/A#1.36/A#1.37/A#1.38/A#1.39/A#1.40/A

36520 atoms, 36880 bonds, 2320 residues, 40 models selected  

> show sel target ab

> hide sel atoms

> hide sel cartoons

> select #1.1/A

913 atoms, 922 bonds, 58 residues, 1 model selected  

> show sel cartoons

> /chain

Unknown command: /chain  

> chain

Unknown command: chain  

> chain

Unknown command: chain  

> delete #1.2-1.40

> select #4/A:1-40 & sideonly

Nothing selected  

> select #4/A:1-40 & sideonly

Nothing selected  

> delete sel

> delete 1.1

Missing or invalid "atoms" argument: invalid atoms specifier  

> delete A1.1

Missing or invalid "atoms" argument: invalid atoms specifier  

> delete /A1.1

Missing or invalid "atoms" argument: only initial part "/A1" of atom specifier
valid  

> ui windowfill toggle

> delete /A,1.1

Missing or invalid "atoms" argument: only initial part "/A,1" of atom
specifier valid  

> delete /A,1

> hide #1 models

> show #1 models

> select #1

1 model selected  

> ~select #1

Nothing selected  

> color #1 #005500 models transparency 0

> hide #1 models

> show #1 models

> hide cartoons

> show cartoons

> show surfaces

> show atoms

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2b87.pdb format pdb

2b87.pdb title:  
Structural basis for molecular recognition In an affibody:affibody complex
[more info...]  
  
Chain information for 2b87.pdb  
---  
Chain | Description | UniProt  
2.1/A 2.2/A 2.3/A 2.4/A 2.5/A 2.6/A 2.7/A 2.8/A 2.9/A 2.10/A 2.11/A 2.12/A
2.13/A 2.14/A 2.15/A 2.16/A 2.17/A 2.18/A 2.19/A 2.20/A 2.21/A 2.22/A 2.23/A
2.24/A 2.25/A 2.26/A 2.27/A 2.28/A 2.29/A 2.30/A 2.31/A 2.32/A 2.33/A 2.34/A
2.35/A 2.36/A 2.37/A 2.38/A 2.39/A 2.40/A | ztaq affibody | Q70AB8_STAAU  
2.1/B 2.2/B 2.3/B 2.4/B 2.5/B 2.6/B 2.7/B 2.8/B 2.9/B 2.10/B 2.11/B 2.12/B
2.13/B 2.14/B 2.15/B 2.16/B 2.17/B 2.18/B 2.19/B 2.20/B 2.21/B 2.22/B 2.23/B
2.24/B 2.25/B 2.26/B 2.27/B 2.28/B 2.29/B 2.30/B 2.31/B 2.32/B 2.33/B 2.34/B
2.35/B 2.36/B 2.37/B 2.38/B 2.39/B 2.40/B | ANTI-ztaq affibody | Q70AB8_STAAU  
  

> delete /B

> delete /A.2

Missing or invalid "atoms" argument: only initial part "/A" of atom specifier
valid  

> delete /A,2

> ui windowfill toggle

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2b87.pdb format pdb

2b87.pdb title:  
Structural basis for molecular recognition In an affibody:affibody complex
[more info...]  
  
Chain information for 2b87.pdb  
---  
Chain | Description | UniProt  
3.1/A 3.2/A 3.3/A 3.4/A 3.5/A 3.6/A 3.7/A 3.8/A 3.9/A 3.10/A 3.11/A 3.12/A
3.13/A 3.14/A 3.15/A 3.16/A 3.17/A 3.18/A 3.19/A 3.20/A 3.21/A 3.22/A 3.23/A
3.24/A 3.25/A 3.26/A 3.27/A 3.28/A 3.29/A 3.30/A 3.31/A 3.32/A 3.33/A 3.34/A
3.35/A 3.36/A 3.37/A 3.38/A 3.39/A 3.40/A | ztaq affibody | Q70AB8_STAAU  
3.1/B 3.2/B 3.3/B 3.4/B 3.5/B 3.6/B 3.7/B 3.8/B 3.9/B 3.10/B 3.11/B 3.12/B
3.13/B 3.14/B 3.15/B 3.16/B 3.17/B 3.18/B 3.19/B 3.20/B 3.21/B 3.22/B 3.23/B
3.24/B 3.25/B 3.26/B 3.27/B 3.28/B 3.29/B 3.30/B 3.31/B 3.32/B 3.33/B 3.34/B
3.35/B 3.36/B 3.37/B 3.38/B 3.39/B 3.40/B | ANTI-ztaq affibody | Q70AB8_STAAU  
  

> ui windowfill toggle

> select #3

73320 atoms, 73840 bonds, 4640 residues, 41 models selected  

> ~select #3

Nothing selected  

> select #2

1 model selected  

> ~select #2

Nothing selected  

> select #3

73320 atoms, 73840 bonds, 4640 residues, 41 models selected  

> ~select #3

Nothing selected  

> select #3

73320 atoms, 73840 bonds, 4640 residues, 41 models selected  

> delete /A,2

> select #3.2/B

920 atoms, 924 bonds, 58 residues, 1 model selected  

> delete

Missing or invalid "atoms" argument: empty atom specifier  

> delete sek

Missing or invalid "atoms" argument: invalid atoms specifier  

> delete sel

> select #3.3

920 atoms, 924 bonds, 58 residues, 1 model selected  

> select #3.3-#3.40

Expected an objects specifier or a keyword  

> select #3.3-40

34960 atoms, 35112 bonds, 2204 residues, 38 models selected  

> delete sel

> color #3 #aa0000 models transparency 0

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2m5a.pdb format pdb

2m5a.pdb title:  
Protein A binding by an engineered affibody molecule [more info...]  
  
Chain information for 2m5a.pdb  
---  
Chain | Description | UniProt  
4.1/A 4.2/A 4.3/A 4.4/A 4.5/A 4.6/A 4.7/A 4.8/A 4.9/A 4.10/A 4.11/A 4.12/A
4.13/A 4.14/A 4.15/A 4.16/A 4.17/A 4.18/A 4.19/A 4.20/A | immunoglobulin
G-binding protein A | SPA_STAAU  
4.1/B 4.2/B 4.3/B 4.4/B 4.5/B 4.6/B 4.7/B 4.8/B 4.9/B 4.10/B 4.11/B 4.12/B
4.13/B 4.14/B 4.15/B 4.16/B 4.17/B 4.18/B 4.19/B 4.20/B | ZPA963 |  
  

> delete /B

> hide #2 models

> show #2 models

> hide #3 models

> show #3 models

> hide #1 models

> show #1 models

> hide #2 models

> hide #3 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> select #3

1 model selected  

> show cartoons

> hide #!4 models

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2m5a.pdb format pdb

2m5a.pdb title:  
Protein A binding by an engineered affibody molecule [more info...]  
  
Chain information for 2m5a.pdb  
---  
Chain | Description | UniProt  
5.1/A 5.2/A 5.3/A 5.4/A 5.5/A 5.6/A 5.7/A 5.8/A 5.9/A 5.10/A 5.11/A 5.12/A
5.13/A 5.14/A 5.15/A 5.16/A 5.17/A 5.18/A 5.19/A 5.20/A | immunoglobulin
G-binding protein A | SPA_STAAU  
5.1/B 5.2/B 5.3/B 5.4/B 5.5/B 5.6/B 5.7/B 5.8/B 5.9/B 5.10/B 5.11/B 5.12/B
5.13/B 5.14/B 5.15/B 5.16/B 5.17/B 5.18/B 5.19/B 5.20/B | ZPA963 |  
  

> delete /B

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> select #1

1 model selected  

> ~select #1

Nothing selected  

> select #5

18540 atoms, 18680 bonds, 1160 residues, 21 models selected  

> select #5.2-40

17613 atoms, 17746 bonds, 1102 residues, 19 models selected  

> delete sel

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2m5a.pdb format pdb

2m5a.pdb title:  
Protein A binding by an engineered affibody molecule [more info...]  
  
Chain information for 2m5a.pdb  
---  
Chain | Description | UniProt  
6.1/A 6.2/A 6.3/A 6.4/A 6.5/A 6.6/A 6.7/A 6.8/A 6.9/A 6.10/A 6.11/A 6.12/A
6.13/A 6.14/A 6.15/A 6.16/A 6.17/A 6.18/A 6.19/A 6.20/A | immunoglobulin
G-binding protein A | SPA_STAAU  
6.1/B 6.2/B 6.3/B 6.4/B 6.5/B 6.6/B 6.7/B 6.8/B 6.9/B 6.10/B 6.11/B 6.12/B
6.13/B 6.14/B 6.15/B 6.16/B 6.17/B 6.18/B 6.19/B 6.20/B | ZPA963 |  
  

> select #5.1-40

927 atoms, 934 bonds, 58 residues, 1 model selected  

> select #6.1-40

36460 atoms, 36740 bonds, 2320 residues, 20 models selected  

> select #6/B.1-40

Expected an objects specifier or a keyword  

> select #6/B:1-40

Nothing selected  

> select #6/B:1-40

Nothing selected  

> hide #1 models

> select #6

36460 atoms, 36740 bonds, 2320 residues, 21 models selected  

> ~select #6

Nothing selected  

> select #6

36460 atoms, 36740 bonds, 2320 residues, 21 models selected  

> ~select #6

Nothing selected  

> select
> #6.1/B#6.2/B#6.3/B#6.4/B#6.5/B#6.6/B#6.7/B#6.8/B#6.9/B#6.10/B#6.11/B#6.12/B#6.13/B#6.14/B#6.15/B#6.16/B#6.17/B#6.18/B#6.19/B#6.20/B

17920 atoms, 18060 bonds, 1160 residues, 20 models selected  

> select
> #4.1/A#4.2/A#4.3/A#4.4/A#4.5/A#4.6/A#4.7/A#4.8/A#4.9/A#4.10/A#4.11/A#4.12/A#4.13/A#4.14/A#4.15/A#4.16/A#4.17/A#4.18/A#4.19/A#4.20/A#5.1/A#6.1/A#6.2/A#6.3/A#6.4/A#6.5/A#6.6/A#6.7/A#6.8/A#6.9/A#6.10/A#6.11/A#6.12/A#6.13/A#6.14/A#6.15/A#6.16/A#6.17/A#6.18/A#6.19/A#6.20/A

38007 atoms, 38294 bonds, 2378 residues, 41 models selected  

> delete sel

> select #6.2-40

17024 atoms, 17157 bonds, 1102 residues, 19 models selected  

> delete sel

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2m5a.pdb format pdb

2m5a.pdb title:  
Protein A binding by an engineered affibody molecule [more info...]  
  
Chain information for 2m5a.pdb  
---  
Chain | Description | UniProt  
7.1/A 7.2/A 7.3/A 7.4/A 7.5/A 7.6/A 7.7/A 7.8/A 7.9/A 7.10/A 7.11/A 7.12/A
7.13/A 7.14/A 7.15/A 7.16/A 7.17/A 7.18/A 7.19/A 7.20/A | immunoglobulin
G-binding protein A | SPA_STAAU  
7.1/B 7.2/B 7.3/B 7.4/B 7.5/B 7.6/B 7.7/B 7.8/B 7.9/B 7.10/B 7.11/B 7.12/B
7.13/B 7.14/B 7.15/B 7.16/B 7.17/B 7.18/B 7.19/B 7.20/B | ZPA963 |  
  

> select #7/B:1-20

Nothing selected  

> select #7/B:1-20 & sideonly

Nothing selected  

> hide #5 models

> hide #!7 models

> show #!7 models

> hide #!6 models

> show #!6 models

> select #7/A:4-10

2540 atoms, 2540 bonds, 140 residues, 20 models selected  

> select #7/B:1-20

Nothing selected  

> select #7/A:1-40

13120 atoms, 13240 bonds, 800 residues, 20 models selected  

> select #7/A:1-50

16160 atoms, 16280 bonds, 1000 residues, 20 models selected  

> select #7/A:1-50

16160 atoms, 16280 bonds, 1000 residues, 20 models selected  

> select #7/B:1-50

Nothing selected  

> select #7/B:1.1-1.20

Expected an objects specifier or a keyword  

> select #7/A

18540 atoms, 18680 bonds, 1160 residues, 20 models selected  

> select #7/B

17920 atoms, 18060 bonds, 1160 residues, 20 models selected  

> delete sel

> ui mousemode right "translate selected models"

> select #6

896 atoms, 903 bonds, 58 residues, 2 models selected  

> view matrix models #6,1,0,0,-2.3798,0,1,0,7.1171,0,0,1,15.277

> view matrix models #6,1,0,0,-10.014,0,1,0,12.196,0,0,1,2.5005

> select #6.1/B

896 atoms, 903 bonds, 58 residues, 1 model selected  

> select
> #7.1/A#7.2/A#7.3/A#7.4/A#7.5/A#7.6/A#7.7/A#7.8/A#7.9/A#7.10/A#7.11/A#7.12/A#7.13/A#7.14/A#7.15/A#7.16/A#7.17/A#7.18/A#7.19/A#7.20/A

18540 atoms, 18680 bonds, 1160 residues, 20 models selected  

> hide sel surfaces

> hide sel cartoons

> select #7.1/A

927 atoms, 934 bonds, 58 residues, 1 model selected  

> show sel cartoons

> show sel surfaces

> mlp sel

Map values for surface "2m5a.pdb_A SES surface": minimum -23.47, mean -4.183,
maximum 22.99  
To also show corresponding color key, enter the above mlp command and add key
true  

> select #6

896 atoms, 903 bonds, 58 residues, 2 models selected  

> show sel surfaces

> mlp sel

Map values for surface "2m5a.pdb_B SES surface": minimum -23.44, mean -3.869,
maximum 24.01  
To also show corresponding color key, enter the above mlp command and add key
true  

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 2m5a.pdb_B SES surface #6.1.1: minimum, -19.08, mean
-1.17, maximum 12.37  
To also show corresponding color key, enter the above coulombic command and
add key true  

> select #7

18540 atoms, 18680 bonds, 1160 residues, 21 models selected  

> coulombic sel

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for 2m5a.pdb_A SES surface #7.1.1: minimum, -16.80, mean
-0.21, maximum 17.06  
Coulombic values for 2m5a.pdb_A SES surface #7.2.1: minimum, -16.74, mean
-0.06, maximum 14.88  
Coulombic values for 2m5a.pdb_A SES surface #7.3.1: minimum, -16.01, mean
-0.43, maximum 8.03  
Coulombic values for 2m5a.pdb_A SES surface #7.4.1: minimum, -12.95, mean
-0.35, maximum 9.98  
Coulombic values for 2m5a.pdb_A SES surface #7.5.1: minimum, -13.80, mean
-0.34, maximum 15.41  
Coulombic values for 2m5a.pdb_A SES surface #7.6.1: minimum, -13.35, mean
-0.55, maximum 9.22  
Coulombic values for 2m5a.pdb_A SES surface #7.7.1: minimum, -16.30, mean
-0.37, maximum 16.59  
Coulombic values for 2m5a.pdb_A SES surface #7.8.1: minimum, -15.76, mean
-0.14, maximum 12.20  
Coulombic values for 2m5a.pdb_A SES surface #7.9.1: minimum, -16.13, mean
-0.36, maximum 10.52  
Coulombic values for 2m5a.pdb_A SES surface #7.10.1: minimum, -17.19, mean
0.08, maximum 12.55  
Coulombic values for 2m5a.pdb_A SES surface #7.11.1: minimum, -15.78, mean
-0.11, maximum 10.44  
Coulombic values for 2m5a.pdb_A SES surface #7.12.1: minimum, -12.98, mean
-0.33, maximum 12.73  
Coulombic values for 2m5a.pdb_A SES surface #7.13.1: minimum, -13.72, mean
-0.29, maximum 27.06  
Coulombic values for 2m5a.pdb_A SES surface #7.14.1: minimum, -12.91, mean
-0.22, maximum 14.33  
Coulombic values for 2m5a.pdb_A SES surface #7.15.1: minimum, -16.78, mean
-0.40, maximum 15.87  
Coulombic values for 2m5a.pdb_A SES surface #7.16.1: minimum, -16.19, mean
-0.33, maximum 15.17  
Coulombic values for 2m5a.pdb_A SES surface #7.17.1: minimum, -16.76, mean
-0.42, maximum 11.82  
Coulombic values for 2m5a.pdb_A SES surface #7.18.1: minimum, -13.23, mean
-0.18, maximum 20.70  
Coulombic values for 2m5a.pdb_A SES surface #7.19.1: minimum, -17.79, mean
-0.32, maximum 14.86  
Coulombic values for 2m5a.pdb_A SES surface #7.20.1: minimum, -12.38, mean
-0.29, maximum 10.17  
To also show corresponding color key, enter the above coulombic command and
add key true  

> style sel stick

Changed 18540 atom styles  

> style sel sphere

Changed 18540 atom styles  

> style sel stick

Changed 18540 atom styles  

> color sel bychain

> color sel byhetero

> mlp sel

Map values for surface "2m5a.pdb_A SES surface": minimum -25.72, mean -4.16,
maximum 23.38  
Map values for surface "2m5a.pdb_A SES surface": minimum -23.71, mean -4.037,
maximum 23.22  
Map values for surface "2m5a.pdb_A SES surface": minimum -28.91, mean -4.392,
maximum 23.59  
Map values for surface "2m5a.pdb_A SES surface": minimum -25.02, mean -4.275,
maximum 23.68  
Map values for surface "2m5a.pdb_A SES surface": minimum -23.28, mean -4.324,
maximum 24.68  
Map values for surface "2m5a.pdb_A SES surface": minimum -24.69, mean -4.253,
maximum 24.22  
Map values for surface "2m5a.pdb_A SES surface": minimum -21.88, mean -4.171,
maximum 23.15  
Map values for surface "2m5a.pdb_A SES surface": minimum -21.65, mean -4.217,
maximum 23.72  
Map values for surface "2m5a.pdb_A SES surface": minimum -22.3, mean -4.383,
maximum 23.83  
Map values for surface "2m5a.pdb_A SES surface": minimum -23.44, mean -4.329,
maximum 23.32  
Map values for surface "2m5a.pdb_A SES surface": minimum -22.9, mean -4.185,
maximum 23.12  
Map values for surface "2m5a.pdb_A SES surface": minimum -26.19, mean -4.457,
maximum 23.67  
Map values for surface "2m5a.pdb_A SES surface": minimum -24.56, mean -4.293,
maximum 23.51  
Map values for surface "2m5a.pdb_A SES surface": minimum -24.35, mean -4.384,
maximum 23.2  
Map values for surface "2m5a.pdb_A SES surface": minimum -22.98, mean -4.264,
maximum 23.26  
Map values for surface "2m5a.pdb_A SES surface": minimum -23.47, mean -4.183,
maximum 22.99  
Map values for surface "2m5a.pdb_A SES surface": minimum -24.5, mean -4.382,
maximum 23.61  
Map values for surface "2m5a.pdb_A SES surface": minimum -21.79, mean -4.368,
maximum 24.22  
Map values for surface "2m5a.pdb_A SES surface": minimum -21.96, mean -4.199,
maximum 23.26  
Map values for surface "2m5a.pdb_A SES surface": minimum -28.69, mean -4.461,
maximum 23.2  
To also show corresponding color key, enter the above mlp command and add key
true  

> color bfactor sel

18540 atoms, 1160 residues, 20 surfaces, atom bfactor range 0.08 to 7.63  

> select #6

896 atoms, 903 bonds, 58 residues, 2 models selected  

> color bfactor sel

896 atoms, 58 residues, 1 surfaces, atom bfactor range 0.08 to 4.22  

> style sel stick

Changed 896 atom styles  

> hide sel surfaces

> select #7

18540 atoms, 18680 bonds, 1160 residues, 21 models selected  

> hide sel surfaces

> undo

> delete A

Missing or invalid "atoms" argument: invalid atoms specifier  

> delete /A

> save "C:/ProgramData/ChimeraX/chain B.cxs"

> ~select #7

Nothing selected  

> hide #7 models

> hide #!6 models

> delete /B

> open C:\Users\julia\OneDrive\Uni\Masterarbeit\PDB_files\2m5a.pdb format pdb

2m5a.pdb title:  
Protein A binding by an engineered affibody molecule [more info...]  
  
Chain information for 2m5a.pdb  
---  
Chain | Description | UniProt  
8.1/A 8.2/A 8.3/A 8.4/A 8.5/A 8.6/A 8.7/A 8.8/A 8.9/A 8.10/A 8.11/A 8.12/A
8.13/A 8.14/A 8.15/A 8.16/A 8.17/A 8.18/A 8.19/A 8.20/A | immunoglobulin
G-binding protein A | SPA_STAAU  
8.1/B 8.2/B 8.3/B 8.4/B 8.5/B 8.6/B 8.7/B 8.8/B 8.9/B 8.10/B 8.11/B 8.12/B
8.13/B 8.14/B 8.15/B 8.16/B 8.17/B 8.18/B 8.19/B 8.20/B | ZPA963 |  
  

> hide #!8 models

> hide target m

> delete /B

> delete /A


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 27.20.100.9624
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Manufacturer: Microsoft Corporation
Model: Surface Pro 8
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 8,415,920,128
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i5-1135G7 @ 2.40GHz
OSLanguage: de-DE
Locale: ('de_DE', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

[Eric Pettersen]

1.3