Timeline



Mar 8, 2022:

6:20 PM Ticket #6337 (Try newer RealSense depth cameras for mixed reality video capture) created by Tom Goddard
Begin forwarded message: From: Tom Goddard Subject: ChimeraX mixed …
5:34 PM Ticket #6336 (RealSense camera view clips VR gui elements) created by goddard@…
[…]
4:39 PM Ticket #6335 (Toolshed install of bundles broken with Qt 6) created by goddard@…
[…]
4:26 PM Ticket #6334 (Say Windows 11 supported on Download page) created by Tom Goddard
We should say that ChimeraX is supported on Windows 11 on the download …
2:09 PM Ticket #6333 (Show AlphaFold predicted aligned error (PAE) for selected residues) created by Tristan Croll
[…] P0C7U0_questionable_interface.cxs
1:17 PM Ticket #6332 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
1:15 PM Ticket #6331 (Unknown crash) closed by pett
can't reproduce
1:09 PM Ticket #6329 (Saving command history: No space left on device) closed by pett
nonchimerax
1:04 PM Ticket #6327 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
1:00 PM Ticket #6326 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
10:24 AM 2022-3-10 created by Tom Goddard
10:23 AM DeveloperMeetings edited by Tom Goddard
(diff)
8:58 AM Ticket #6332 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:22 AM Ticket #6331 (Unknown crash) created by chimerax-bug-report@…
[…]
4:25 AM Ticket #6330 (KeyError handling Blast results) created by chimerax-bug-report@…
[…]
3:41 AM Ticket #6329 (Saving command history: No space left on device) created by chimerax-bug-report@…
[…]
2:00 AM Ticket #6328 (Crash using File→Open on Windows and/or in return statement) created by wh-chung2@…
[…]
1:11 AM Ticket #6327 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

Mar 7, 2022:

1:13 PM Ticket #6326 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
11:54 AM Ticket #6085 (No QAbstractVideoSurface in Qt6) closed by Tom Goddard
fixed: Fixed. Made webcam command work with Qt6. Qt 6 greatly changed the …
11:45 AM Ticket #6323 (Crashed on quit using webcam command with Qt6) closed by Tom Goddard
fixed: Fixed. ChimeraX Python code was not holding references to the …
11:41 AM Ticket #6325 (Crash on exit after webcam off command deleting QMediaCaptureSession ...) closed by Tom Goddard
fixed: Fixed. Apparently if the QCamera is deleted by "webcam off" and later …
10:53 AM Ticket #6324 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by pett
duplicate: Duplicate of #5207
10:46 AM Ticket #6325 (Crash on exit after webcam off command deleting QMediaCaptureSession ...) created by goddard@…
[…]
10:44 AM Ticket #6324 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by chimerax-bug-report@…
[…]
10:36 AM Ticket #6323 (Crashed on quit using webcam command with Qt6) created by goddard@…
[…]
10:28 AM Ticket #6211 (Problem querying for new version: 'DefaultApi' object has no attribute ...) closed by Zach Pearson
duplicate: Should be fixed in any build from after 01/24
10:06 AM Ticket #6314 (Error while fetching from AlphaFold database) closed by Zach Pearson
fixed: Switched the default version on the backend from 2 to 1 and ran those …
9:55 AM Ticket #6319 (Crash saving .cmap file) closed by Tom Goddard
can't reproduce: PyTables crashes saving hdf5 file (*.cmap) on this user's Ubuntu 18.04 …
9:46 AM Ticket #6322 (Bad pseudobond / group attributes) closed by pett
can't reproduce: Would need the alternative_cox_position.cxs session file to have any …
9:23 AM Ticket #6321 (Crash saving .cmap file) closed by pett
duplicate
9:22 AM Ticket #6320 (Crash saving .cmap file) closed by pett
duplicate
4:51 AM Ticket #6322 (Bad pseudobond / group attributes) created by chimerax-bug-report@…
[…]
3:41 AM Ticket #6321 (Crash saving .cmap file) created by chimerax-bug-report@…
[…]
3:40 AM Ticket #6320 (Crash saving .cmap file) created by chimerax-bug-report@…
[…]
3:38 AM Ticket #6319 (Crash saving .cmap file) created by chimerax-bug-report@…
[…]

Mar 6, 2022:

9:12 AM Ticket #6318 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]

Mar 5, 2022:

12:41 AM Ticket #6317 (Crash in event loop) created by kunkungking@…
[…]

Mar 4, 2022:

6:06 PM Ticket #6305 (VR hands and gui clipped by scene clip planes) closed by Tom Goddard
fixed: Fixed. In the past I made depth cue not apply to the VR gui elements. …
2:35 PM Ticket #6316 (Crash drawin silhouettes) closed by Tom Goddard
nonchimerax: OpenGL driver crash. Not surprising with a 13 year old graphics card …
2:24 PM Ticket #6312 (ColabFold-MMSEQs2 notebook much faster than AlphaFold2 notebook) closed by Tom Goddard
fixed: Yeah, I have wanted to try mmseq2 with AlphaFold for about 3 months …
2:20 PM Ticket #6310 (Unknown problem) closed by Tom Goddard
duplicate: Steven was just providing machine info for the faulty silhouette edge …
11:27 AM Ticket #6311 (Crash computing secondary structure) closed by pett
fixed: Hi Drew, Thanks for reporting this problem. I have applied a fix and …
10:23 AM Ticket #6315 (Crash computing secondary structure) closed by pett
duplicate: Duplicate of #6311
9:34 AM Ticket #6313 (atom_search_lib missing) closed by pett
fixed: Yes, as you noted, fixed. It was broken for one day. There are other …
9:18 AM Ticket #6309 (Long atom spec crashes ChimeraX) closed by pett
duplicate
8:04 AM Ticket #6316 (Crash drawin silhouettes) created by chimerax-bug-report@…
[…]
7:40 AM Ticket #6315 (Crash computing secondary structure) created by chimerax-bug-report@…
[…]
6:59 AM Ticket #6314 (Error while fetching from AlphaFold database) created by m.bienstein@…
[…]
4:19 AM Ticket #6313 (atom_search_lib missing) created by Tristan Croll
[…]
3:43 AM Ticket #6312 (ColabFold-MMSEQs2 notebook much faster than AlphaFold2 notebook) created by Tristan Croll
[…]
2:07 AM Ticket #6311 (Crash computing secondary structure) created by drew.parsons@…
[…] 2lby.pdb

Mar 3, 2022:

11:24 PM Ticket #6310 (Unknown problem) created by stdegiet@…
[…]
7:05 PM Ticket #6308 (traceback using "measure center" on map model that hasn't been shown ...) closed by Tom Goddard
fixed: Fixed. Made measure center command use all voxels if volume has no …
6:51 PM Ticket #6309 (Long atom spec crashes ChimeraX) created by chimerax-bug-report@…
[…]
6:40 PM Ticket #6308 (traceback using "measure center" on map model that hasn't been shown ...) created by Elaine Meng
For example, use measure center #1 after opening the DICOM folder …
6:37 PM Ticket #6307 (Vive Tracker for RealSense camera not aligned with Oculus headsets) created by Tom Goddard
Doing mixed reality video capture with VR and a RealSense depth …
5:43 PM Ticket #6306 (Crash finding clashing atoms) created by 839727090@…
[…]
4:51 PM Ticket #6305 (VR hands and gui clipped by scene clip planes) created by goddard@…
[…]
4:39 PM Ticket #6266 ('cd' as command vs. menu) closed by pett
can't reproduce: Hi Fred, I guess we'll chalk this one up to cosmic rays. :-). Thanks …
4:21 PM Ticket #6300 (Region not in region_browser.sequence_regions) closed by pett
fixed: Hi Alvin, Thanks for reporting this problem. Though it doesn't help …
4:03 PM Ticket #6302 (Crash in GL.glDrawElementsInstanced) closed by Tom Goddard
can't reproduce: Crash calling GL.glDrawElementsInstanced(element_type, ne, …
3:59 PM Ticket #6301 (Rendering on macOS Monterey) closed by Tom Goddard
nonchimerax: This is a problem in Apple's graphics driver. I have only seen it on …
3:54 PM Ticket #6296 (Crash showing Rapid Access at startup) closed by Tom Goddard
can't reproduce: Hoping this Qt bug is fixed in Qt 6. So far not seen in Qt 6.
2:17 PM NTTData edited by Elaine Meng
(diff)
2:15 PM NTTData edited by Elaine Meng
(diff)
2:13 PM NTTData edited by Elaine Meng
(diff)
1:54 PM NTTData edited by Elaine Meng
(diff)
1:51 PM NTTData edited by Elaine Meng
(diff)
1:49 PM NTTData edited by Elaine Meng
(diff)
12:10 PM 2022-3-3 edited by Tom Goddard
(diff)
12:08 PM Ticket #6298 (Crash in event loop after matchmaker) closed by pett
can't reproduce
11:28 AM Ticket #5985 (Download page Ubuntu install command is wrong) closed by Greg Couch
fixed: Name now matches.
11:26 AM Ticket #6304 (Various errors) created by satyshur@…
[…]
11:25 AM Dev2022-3-10 created by Tom Goddard
11:22 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:18 AM Ticket #6303 (Help viewer context menu not working in Qt6) created by Zach Pearson
[…]
11:06 AM 2022-3-3 created by Tom Goddard
11:06 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:57 AM Ticket #6294 (Signal callback crash) closed by pett
can't reproduce
8:46 AM Ticket #6302 (Crash in GL.glDrawElementsInstanced) created by chimerax-bug-report@…
[…]
6:35 AM Ticket #6301 (Rendering on macOS Monterey) created by Steven.De.Gieter@…
[…] [[Image(...)]]
3:49 AM Ticket #6300 (Region not in region_browser.sequence_regions) created by chew0357@…
[…]
3:48 AM Ticket #6299 (Region not in region_browser.sequence_regions) created by chimerax-bug-report@…
[…]

Mar 2, 2022:

9:20 PM Ticket #6298 (Crash in event loop after matchmaker) created by chimerax-bug-report@…
[…]
6:23 PM Ticket #4759 (dssp unexpectedly slow) closed by pett
fixed: Reduced 6r83 from 30 seconds to 2.8 seconds and 4yd9 from 20 seconds …
4:44 PM Training edited by Tom Goddard
(diff)
4:37 PM Ticket #5964 (Optimizing ISOLDE map zoning using JAX) closed by Tom Goddard
fixed: Fixed. Improved the mesh edge performance, about 6x faster, tickets …
4:32 PM Ticket #6243 (Mesh calculation from triangles very slow) closed by Tom Goddard
fixed: Fixed. The masked edges calculation now uses C++ vector, sort, and …
4:30 PM Ticket #6297 (Graphics is computing mesh edges for surface twice) closed by Tom Goddard
fixed: Fixed. I made the selection highlight reuse the mesh edges from the …
4:28 PM Ticket #6297 (Graphics is computing mesh edges for surface twice) created by Tom Goddard
The graphics code computes the mesh edges for a triangulated surface …
4:23 PM Ticket #6279 (Reading *.cmap file: No module named 'chimera') closed by Tom Goddard
fixed: Fixed. Reading .cmap file failed if it had a non-zero rotation angle …
3:40 PM Ticket #6274 (Graphics crash, macOS 10.15.7, AMD Radeon Pro 580X) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Was drawing Qt user interface, not …
3:40 PM Ticket #6296 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
3:33 PM Ticket #6265 (Problem restoring clip caps when volume surface not restored) closed by Tom Goddard
fixed: Fixed. Restoring a session where a volume file was not found and not …
3:17 PM Ticket #6264 (Crash in event loop after or while clearing selection) closed by Tom Goddard
can't reproduce: No clues.
3:09 PM Ticket #6259 (Permission denied saving image to desktop (and other errors)) closed by Tom Goddard
duplicate: There are 3 ChimeraX errors in this report. First ChimeraX crashed. …
2:18 PM Ticket #6295 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
2:06 PM Ticket #6294 (Signal callback crash) created by chimerax-bug-report@…
[…]
1:11 PM Ticket #6293 (Errors checking for new versions) closed by pett
duplicate
1:10 PM Ticket #6292 (Errors checking for new versions) closed by pett
duplicate
11:29 AM Ticket #6290 (Crash in QOpenGLContext.makeCurrent()) closed by Tom Goddard
can't reproduce: Crashed in making the opengl context current during a window resize …
11:26 AM Ticket #6293 (Errors checking for new versions) created by chimerax-bug-report@…
[…]
11:07 AM Ticket #6292 (Errors checking for new versions) created by chimerax-bug-report@…
[…]
9:26 AM Ticket #6291 (Crash using color editor) closed by pett
can't reproduce
9:18 AM Ticket #6289 (Crash in event loop) closed by pett
can't reproduce
9:18 AM Ticket #6288 (Errors checking for new versions) closed by pett
duplicate
9:16 AM Ticket #6287 (Crash in event loop) closed by pett
can't reproduce
9:13 AM Ticket #6285 (Unknown crash) closed by pett
can't reproduce
8:27 AM Ticket #6291 (Crash using color editor) created by chimerax-bug-report@…
[…]
7:10 AM Ticket #6290 (Crash in QOpenGLContext.makeCurrent()) created by chimerax-bug-report@…
[…]
6:57 AM Ticket #6289 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:23 AM Ticket #6288 (Errors checking for new versions) created by chimerax-bug-report@…
[…]
2:24 AM Ticket #6287 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:22 AM Ticket #6286 (Give a good error message if RBVI resources unavailable) created by chimerax-bug-report@…
[…]

Mar 1, 2022:

7:56 PM Ticket #6281 (Cannot show tomogram as surface or volume) closed by Tom Goddard
not a bug: The error message means the file was not readable. OSError: [Errno 5] …
7:51 PM Ticket #6282 (3D stereo not correct.) closed by Tom Goddard
not a bug: The eye separation is specified by the camera command options …
7:16 PM Ticket #6285 (Unknown crash) created by chimerax-bug-report@…
[…]
7:07 PM Ticket #6284 (Errors checking for new versions) created by chimerax-bug-report@…
[…]
2:39 PM Ticket #6280 (Traceback fetching available ChimeraX versions) closed by pett
duplicate: Hi Kenneth, Thanks for reporting this problem. You can safely ignore …
2:13 PM Ticket #6283 (phi-psi in isolde does not show current selection.) created by kenneth.satyshur@…
[…] restrict-current-sel.png
1:57 PM Ticket #6282 (3D stereo not correct.) created by kenneth.satyshur@…
[…] 3d-stereo-chimerax-isolde.png
1:57 PM Ticket #6281 (Cannot show tomogram as surface or volume) created by weijianz@…
[…]
1:31 PM Ticket #6280 (Traceback fetching available ChimeraX versions) created by satyshur@…
[…]
11:00 AM Ticket #6279 (Reading *.cmap file: No module named 'chimera') created by Elaine Meng
[…]
10:15 AM Ticket #6273 (Infinite recursion drawing alignment) closed by pett
can't reproduce
10:14 AM Ticket #6278 (Isolde will not install.) created by kenneth.satyshur@…
[…] isolde-stuck.png
9:58 AM Ticket #6267 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
9:33 AM Ticket #6262 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) closed by pett
can't reproduce
9:31 AM Ticket #6261 (Crash using File→Open on Windows) closed by pett
can't reproduce
9:30 AM Ticket #6258 (ISOLDE: KeyError in find_glycan_template_name_and_link) closed by Tristan Croll
fixed: Ancient version of ISOLDE. Traceback is long-since fixed (problem is …
9:27 AM Ticket #6260 (Can't destroy status bar) closed by pett
duplicate
9:16 AM Ticket #6257 (Crash in event loop after downloading new SEQCROW) closed by pett
can't reproduce
9:14 AM Ticket #6256 (Crash in swap_buffers) closed by pett
can't reproduce: Hi Sid, This is either a problem with your graphics driver or with …
8:46 AM Ticket #6277 (Can't get to isolde under tools.) created by kenneth.satyshur@…
[…]
7:08 AM Ticket #6276 (Errors getting available bundles list) created by yunrong_gao@…
[…]
5:57 AM Ticket #6275 (Errors getting available bundles list) created by gyadav@…
[…]
5:50 AM Ticket #6274 (Graphics crash, macOS 10.15.7, AMD Radeon Pro 580X) created by chimerax-bug-report@…
[…]
3:57 AM Ticket #6273 (Infinite recursion drawing alignment) created by chimerax-bug-report@…
[…]

Feb 28, 2022:

9:06 PM Ticket #6272 (Errors getting available bundles list) created by kklee@…
[…]
6:40 PM Ticket #6271 (in techpreview Help Viewer (browser), trying to copy text gives traceback) created by Elaine Meng
trying to copy text from ChimeraX browser by highlighting it and using …
6:38 PM Ticket #6270 (in techpreview, trying to get context menu in ChimeraX help viewer ...) created by Elaine Meng
Ctrl-click in main body of ChimeraX help viewer (browser) window which …
6:33 PM Ticket #6269 (trying to use Report a Bug when our system is down gives traceback) created by Elaine Meng
Failed to send bug report. Error while sending follows: Traceback …
3:45 PM Ticket #6268 (Release PyQt6 to the daily builds) created by Zach Pearson
This is (for the most part) a bookkeeping ticket to track what other …
8:48 AM Ticket #6267 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:32 AM Ticket #6266 ('cd' as command vs. menu) created by hughson@…
[…]
6:12 AM Ticket #6265 (Problem restoring clip caps when volume surface not restored) created by zhangxiaofeng@…
[…]
1:33 AM Ticket #6264 (Crash in event loop after or while clearing selection) created by chimerax-bug-report@…
[…]

Feb 27, 2022:

9:52 PM Ticket #6263 (Molecular Dynamics Viewer: Values array length does not match objects ...) created by venkatareddy@…
[…]
1:07 PM Ticket #6262 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) created by chimerax-bug-report@…
[…]
8:33 AM Ticket #6261 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]

Feb 26, 2022:

6:20 PM Ticket #6260 (Can't destroy status bar) created by chimerax-bug-report@…
[…]
9:09 AM Ticket #6259 (Permission denied saving image to desktop (and other errors)) created by zhangya1@…
[…] 屏幕截囟(376).png
6:13 AM Ticket #6258 (ISOLDE: KeyError in find_glycan_template_name_and_link) created by chimerax-bug-report@…
[…]
12:35 AM Ticket #6257 (Crash in event loop after downloading new SEQCROW) created by chimerax-bug-report@…
[…]

Feb 25, 2022:

6:55 PM Ticket #6256 (Crash in swap_buffers) created by 839727090@…
[…]
6:02 PM Ticket #6255 (Make DICOM reader read time series from 2D images) created by goddard@…
Jason Rubenstein asked about displaying a DICOM time series consisting …
5:00 PM Ticket #5143 (Avoid recalculating idatm_types for entire model after changes?) closed by pett
wontfix: After further reflection, the simple Residue dirty bit I was …
4:29 PM Ticket #6254 (opening 1plx as trajectory (coordset true) omits inter-residue bonds) closed by pett
duplicate: Duplicate of #6253
4:27 PM Ticket #6254 (opening 1plx as trajectory (coordset true) omits inter-residue bonds) created by goddard@…
[…]
4:25 PM Ticket #6252 (perframe surface zone keeps showing whole surface) closed by Tom Goddard
limitation: Ok, this isn't pretty but here are some solutions. The problem is …
3:28 PM Ticket #6246 (Crash running AlphaFold prediction) closed by Tom Goddard
can't reproduce: Probably a crash in the Qt html panel. No info to help debug it.
3:26 PM Ticket #6253 (opening 1plx as trajectory (coordset true) omits inter-residue bonds) created by Elaine Meng
This is a short peptide NMR ensemble. If I open the regular way the …
3:16 PM Ticket #6252 (perframe surface zone keeps showing whole surface) created by J.R.Lewandowski@…
From: "Lewandowski, Jozef" <J.R.Lewandowski@…> via …
2:51 PM Ticket #6251 (Crash in Qt on exit) closed by Tom Goddard
nonchimerax: Ok. The crash report is ChimeraX crashing when you were quitting it …
1:37 PM Ticket #6250 (Crash in event loop) closed by pett
can't reproduce: Possibly while doing something with rotamers
1:23 PM Ticket #6249 (Crash opening BILD file) closed by pett
can't reproduce
1:14 PM Ticket #6251 (Crash in Qt on exit) created by wxh180@…
[…]
1:04 PM Ticket #6250 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:58 AM Ticket #6249 (Crash opening BILD file) created by chimerax-bug-report@…
[…]
11:53 AM Ticket #6248 (Qt6 problems) created by j.r.lewandowski@…
[…]
11:30 AM Ticket #6244 (ViewdockX after rows deleted: KeyError: 'stars') closed by pett
fixed: Fixed in tomorrow's daily build
10:11 AM Ticket #6242 (wrapped C/C++ object of type QScreen has been deleted) closed by pett
duplicate
9:16 AM Ticket #6228 (Surface values not reported) closed by Tom Goddard
nonchimerax: Reporter replied that status line messages giving chain info do not …
4:44 AM Ticket #6247 (CGSGetSurfaceBinding failed) created by 839727090@…
[…]
2:25 AM Ticket #6246 (Crash running AlphaFold prediction) created by chimerax-bug-report@…
[…]
12:06 AM Ticket #6112 (No vseries help) closed by Greg Couch
fixed
12:02 AM Ticket #6158 (Open BILD file: float division by zero) closed by Greg Couch
fixed: No response. Assume the fix worked.

Feb 24, 2022:

11:01 PM Ticket #6245 (ISOLDE _show_selected_clash: 'residues' is empty) created by chimerax-bug-report@…
[…]
9:57 PM Ticket #6244 (ViewdockX after rows deleted: KeyError: 'stars') created by shahriar.arab@…
[…]
7:27 PM Ticket #6192 (Segger fit dialog tried to save a closed volume model in a session) closed by Tom Goddard
fixed: Fixed. Fixed session save when segmented map deleted. But Segger is …
6:24 PM Ticket #6233 ("camera stereo" interferes with up-arrow selection) closed by Tom Goddard
fixed: Fixed. Switching camera mode to stereo made a new graphics window …
6:13 PM Ticket #6171 (camera stereo: 'NoneType' object has no attribute 'opengl_buffer) closed by Tom Goddard
fixed: Fixed. Added check to make sure OpenGL code does not try to set …
6:12 PM Ticket #6171 (camera stereo: 'NoneType' object has no attribute 'opengl_buffer) reopened by Tom Goddard
6:06 PM Ticket #6186 (ghosting of left eye on 3D stereo of a selected atom.) closed by Tom Goddard
fixed: Fixed. Made opengl code use correct glDrawMode() in stereo and when …
4:50 PM Ticket #6243 (Mesh calculation from triangles very slow) created by tic20@…
As indicated in comments in ticket #5964 computing mesh edges from …
3:05 PM Ticket #6242 (wrapped C/C++ object of type QScreen has been deleted) created by chimerax-bug-report@…
[…]
2:59 PM Ticket #6239 (graphics out of memory) closed by Tom Goddard
nonchimerax: The OpenGL out of memory errors doing operations that should not use …
2:54 PM Ticket #6235 (Can save movie but not image to desktop) closed by Tom Goddard
nonchimerax: Is the file image1.png already on your Desktop? Maybe ChimeraX does …
2:04 PM Dev2022-2-24 edited by Tom Goddard
(diff)
2:03 PM 2022-2-24 edited by Tom Goddard
(diff)
10:05 AM Ticket #6230 (Crash in QOpenGLFunctions::initializeOpenGLFunctions()) closed by pett
can't reproduce
10:03 AM Ticket #6229 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) closed by pett
can't reproduce
9:58 AM Ticket #6241 (Crash in return statement) closed by pett
can't reproduce
9:58 AM Ticket #6241 (Crash in return statement) created by chimerax-bug-report@…
The following bug report has been submitted: Platform: …
9:55 AM Ticket #6240 (OpenMM runtime error: Release Object) created by chimerax-bug-report@…
The following bug report has been submitted: Platform: …
9:23 AM Ticket #6239 (graphics out of memory) created by chimerax-bug-report@…
The following bug report has been submitted: Platform: …
9:19 AM Ticket #6238 (Crash in event loop, possibly due to bad graphics) closed by pett
can't reproduce
9:19 AM Ticket #6238 (Crash in event loop, possibly due to bad graphics) created by chimerax-bug-report@…
The following bug report has been submitted: Platform: …
9:15 AM Ticket #6237 (Problem switching GPU) created by sergei.gurianov@…
The following bug report has been submitted: Platform: …
9:12 AM Ticket #6236 (Bundle already installed produces traceback) created by safia.aljedani@…
The following bug report has been submitted: Platform: …
9:07 AM Ticket #6235 (Can save movie but not image to desktop) created by weberm@…
The following bug report has been submitted: Platform: …
9:02 AM Ticket #6234 (Cannot save session including volumes bigger than 4 Gbytes) created by linda.franken@…
The following bug report has been submitted: Platform: …
8:56 AM Ticket #6233 ("camera stereo" interferes with up-arrow selection) created by goddard@…
The following bug report has been submitted: Platform: …
8:53 AM Ticket #6232 (Toolshed install button blank) created by yuanqingning@…
The following bug report has been submitted: Platform: …
3:00 AM Ticket #6230 (Crash in QOpenGLFunctions::initializeOpenGLFunctions()) created by chimerax-bug-report@…
[…]

Feb 23, 2022:

9:45 PM Ticket #6086 (VR menus broken with Qt 6) closed by Tom Goddard
fixed: Fixed. Qt6 QMouseEvent constructors require a local widget position …
7:14 PM Ticket #6229 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) created by chimerax-bug-report@…
[…]
7:09 PM Ticket #6228 (Surface values not reported) created by 2173910144@…
The following bug report has been submitted: Platform: …
6:57 PM Ticket #6193 (Volume contour mouse mode broken when outline box shown) closed by Tom Goddard
fixed: Fixed. Code for picking volume under mouse found outline box instead.
6:01 PM Dev2022-2-24 edited by Zach Pearson
(diff)
5:54 PM Ticket #6184 (color byattribute failure) closed by pett
fixed: If the conservation header is set to show Clustal characters, it now …
9:54 AM Ticket #6227 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
6:46 AM Ticket #6219 (Clipper: Floating point exception) closed by Tristan Croll
fixed: Fixed. When deciding on the grid spacing for each cell dimension, …
12:32 AM Ticket #5854 (Crash creating QWebEngineProfile) closed by Tom Goddard
can't reproduce: We have a Qt 6 techpreview ChimeraX build on the download page and so …
12:29 AM Ticket #5876 (Crash recording spin movie) closed by Tom Goddard
can't reproduce: No info about what caused this crash while recording a spin movie.
12:25 AM Ticket #5947 (Crash in GL.glUniform1f) closed by Tom Goddard
can't reproduce: No response from reporter.
12:23 AM Ticket #6084 (Log fails to start: cannot import name 'ChimeraXHtmlView' from ...) closed by Tom Goddard
fixed: Fixed in Qt 6. Won't try to work around this in Qt 5.
12:16 AM Ticket #6195 (Attempt to retrieve context when no valid context) closed by Tom Goddard
can't reproduce

Feb 22, 2022:

11:39 PM Ticket #6222 (resize() needs refcheck=False) closed by Tom Goddard
nonchimerax: This appears to be a bug in profiler behavior. It is not a bug in the …
6:58 PM Ticket #6220 (Cannot install ISOLDE) closed by Greg Couch
can't reproduce: I can't reproduce the problem on Windows 10. In fact, when I tried a …
6:16 PM Ticket #6171 (camera stereo: 'NoneType' object has no attribute 'opengl_buffer) closed by Tom Goddard
can't reproduce
4:17 PM Dev2022-2-24 edited by Zach Pearson
(diff)
4:15 PM Ticket #6226 (Maestro file not recognized by ViewdockX) closed by pett
not a bug: For ViewDockX to show results, the .mae or .maegz files have to have …
2:43 PM Dev2022-2-24 edited by Zach Pearson
(diff)
1:18 PM Ticket #6216 (Crash in chem group) closed by pett
fixed: Hi Amith, Thanks for reporting this problem. I have committed a fix, …
1:14 PM Ticket #6227 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:09 PM Dev2022-2-24 edited by Zach Pearson
(diff)
12:50 PM Ticket #6226 (Maestro file not recognized by ViewdockX) created by Elaine Meng
From: "Rangarajan, Amith via ChimeraX-users" …
12:23 PM Ticket #6190 (SEQCROW: No module named 'pwd') closed by Greg Couch
nonchimerax: Sounds good. We'll consider this as an AaronTools bug.
11:18 AM Ticket #6214 (Graphics driver crash, macOS 10.15.7, Intel HD Graphics 4000, dual display) closed by Tom Goddard
nonchimerax: Crash in Apple graphics driver in 10 year old Mac laptop. We have no …
11:06 AM Ticket #6212 (Fragmented image when molecule and surface is clipped) closed by Tom Goddard
nonchimerax: The image you sent appears to be an atomic model with a surface …
10:31 AM Ticket #6225 (Check for new version: name '_getuser' is not defined) closed by pett
duplicate
10:29 AM Ticket #6225 (Check for new version: name '_getuser' is not defined) created by chimerax-bug-report@…
[…]
9:41 AM Ticket #6224 (Crash deleting structure) closed by pett
duplicate
9:39 AM Dev2022-2-24 created by Tom Goddard
9:38 AM Ticket #6223 (Crash in grako parsing) closed by pett
can't reproduce: Doesn't seem to be the big atom spec problem.
9:37 AM 2022-2-24 created by Tom Goddard
9:36 AM 2022-2-17 edited by Tom Goddard
(diff)
9:30 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:30 AM Ticket #6221 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
5:42 AM Ticket #6224 (Crash deleting structure) created by chimerax-bug-report@…
[…]
5:36 AM Ticket #6223 (Crash in grako parsing) created by chimerax-bug-report@…
[…]
1:38 AM Ticket #6222 (resize() needs refcheck=False) created by Tristan Croll
[…]

Feb 21, 2022:

11:43 PM Ticket #6221 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
7:57 PM Ticket #6220 (Cannot install ISOLDE) created by yuanqingning@…
[…] 1645170641411.png
10:46 AM Ticket #6219 (Clipper: Floating point exception) created by andong.li@…
[…]
9:01 AM Ticket #6218 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
8:59 AM Ticket #6217 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) closed by pett
can't reproduce
8:55 AM Ticket #6215 (Crash removing dock widget from main window) closed by pett
can't reproduce
8:52 AM Ticket #6213 (Crash using File→Open on Windows or clearing set) closed by pett
can't reproduce
8:47 AM Ticket #6210 (Crash during coulombic calculation) closed by pett
can't reproduce
8:44 AM Ticket #6209 (Crash using File→Open on Windows) closed by pett
can't reproduce
8:39 AM Ticket #6206 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) closed by pett
duplicate
8:37 AM Ticket #6205 (Crash in event loop) closed by pett
can't reproduce
8:34 AM Ticket #6203 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
2:58 AM Ticket #6218 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:17 AM Ticket #6217 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) created by chimerax-bug-report@…
[…]

Feb 20, 2022:

2:50 PM Ticket #6216 (Crash in chem group) created by amith.rangarajan@…
[…]
1:08 PM Ticket #6215 (Crash removing dock widget from main window) created by chimerax-bug-report@…
[…]
11:38 AM Ticket #6214 (Graphics driver crash, macOS 10.15.7, Intel HD Graphics 4000, dual display) created by deys@…
[…]
11:30 AM Ticket #6213 (Crash using File→Open on Windows or clearing set) created by chimerax-bug-report@…
[…]
1:04 AM Ticket #6212 (Fragmented image when molecule and surface is clipped) created by pengshuman@…
[…] [[Image(...)]]

Feb 19, 2022:

8:56 PM Ticket #6211 (Problem querying for new version: 'DefaultApi' object has no attribute ...) created by chimerax-bug-report@…
[…]
7:09 PM Ticket #6210 (Crash during coulombic calculation) created by chimerax-bug-report@…
[…]
6:10 PM Ticket #6209 (Crash using File→Open on Windows) created by chimerax-bug-report@…
[…]
9:47 AM Ticket #6208 (Crash deleting structure) created by rhloring@…
[…] Mu-Conotoxin P0C349.pdb

Feb 18, 2022:

11:49 PM Ticket #6207 (Allow AlphaFold to use additonal databases for making sequence alignments) created by cruzrey@…
Suggested by Jorge Cruz-Reyes Begin forwarded message: From: Tom …
11:36 PM Ticket #6175 (Stopping sim in stereo: 'NoneType' object has no attribute 'opengl_buffer') closed by Tom Goddard
duplicate: Error caused by same bug as #6171 although it does not wipe out until …
11:33 PM Ticket #6173 ('graphics restart' crash) closed by Tom Goddard
duplicate: The crash restarting graphics appears to be a graphics driver bug. …
11:19 PM Ticket #6196 (Crash creating QWebEngineProfile) closed by Tom Goddard
duplicate: Yes, the recorded log file is not cleared at startup until the first …
11:12 PM Ticket #6199 (Graphics driver crash, macOS 10.15.7, Intel HD Graphics 4000, dual display) closed by Tom Goddard
nonchimerax
11:06 PM Ticket #6201 (Black specs visible on silhouetted image) closed by Tom Goddard
nonchimerax: Unfortunately the graphics drivers on your exact model of Mac laptop …
5:43 PM Ticket #6206 (MatchMaker: wrapped C/C++ object of type ChainMenuButton has been deleted) created by chimerax-bug-report@…
[…]
2:37 PM Ticket #6205 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:10 PM Ticket #6204 (Crash using File→Open on Windows and/or in return statement) created by mfarrugi@…
[…]
1:55 PM Ticket #6203 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:20 PM Ticket #4812 (Selection Inspector: make bfactor/occupancy editable) closed by pett
fixed: Thanks for clarifying. I won't add this to any to-do list until …
10:00 AM Ticket #6202 (Add ChimeraX logo to movies) created by Tristan Croll
[…]
9:27 AM Ticket #6201 (Black specs visible on silhouetted image) created by stdegiet@…
[…] J554_local_e.png
9:08 AM Ticket #6198 (surfvalues.py) closed by pett
duplicate: Asked and answered on chimerax-users list
9:06 AM Ticket #6197 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) closed by pett
can't reproduce
8:51 AM Ticket #6200 (Crash using File→Open on Windows and/or in trigger.activate()) created by esther.shin@…
[…]
4:47 AM Ticket #6199 (Graphics driver crash, macOS 10.15.7, Intel HD Graphics 4000, dual display) created by chimerax-bug-report@…
[…]
12:11 AM Ticket #6174 (different position from commands typed vs. commands in script) closed by Tom Goddard
limitation: Since I see not tractable solution to this and it seems a very rare …

Feb 17, 2022:

9:55 PM Ticket #6198 (surfvalues.py) created by faye.feiyu@…
[…] [[Image(...)]] …
9:26 PM Ticket #6197 (Crash using File→Open on Windows and/or in show_surface_clip_caps()) created by chimerax-bug-report@…
[…]
7:46 PM Ticket #6196 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]
4:49 PM Training edited by Tom Goddard
(diff)
4:46 PM Ticket #6194 (Crash in event loop) closed by pett
can't reproduce
4:42 PM Ticket #6179 (Crash showing Rapid Access at startup) closed by Tom Goddard
duplicate: We have dozens of reports of this ChimeraX startup error, all on …
4:24 PM Ticket #6165 (Graphics driver crash, macOS 10.15.7, Intel HD Graphics 4000, dual display) closed by Tom Goddard
nonchimerax: This is an ancient 2013 laptop.
3:06 PM NTTData edited by Elaine Meng
(diff)
2:55 PM NTTData edited by Elaine Meng
(diff)
2:41 PM NTTData edited by Elaine Meng
(diff)
2:40 PM Ticket #6195 (Attempt to retrieve context when no valid context) created by sabarik@…
[…]
2:31 PM NTTData edited by Elaine Meng
(diff)
2:12 PM NTTData edited by Elaine Meng
(diff)
1:22 PM NTTData edited by Elaine Meng
(diff)
10:58 AM Ticket #6194 (Crash in event loop) created by phil.cruz@…
[…]
10:39 AM Ticket #6189 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
10:39 AM Ticket #6193 (Volume contour mouse mode broken when outline box shown) created by goddard@…
[…]
10:37 AM Ticket #6192 (Segger fit dialog tried to save a closed volume model in a session) created by chimerax-bug-report@…
[…]
10:35 AM Ticket #6188 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
10:02 AM Ticket #6185 (Crash calling signal handler) closed by pett
can't reproduce
9:36 AM Ticket #6183 (Sequence viewer not tracked by alignments manager) closed by pett
can't reproduce
9:28 AM Ticket #6181 (Infinite recursion drawing alignment) closed by pett
can't reproduce
9:09 AM Ticket #6191 (QT bug?) created by kenneth.satyshur@…
[…]
8:06 AM Ticket #6190 (SEQCROW: No module named 'pwd') created by chimerax-bug-report@…
[…]
5:04 AM Ticket #6189 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Feb 16, 2022:

5:56 PM Ticket #6188 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
4:26 PM Ticket #6187 (Uncatchable error messages making it through to ChimeraX log) closed by Zach Pearson
fixed
3:31 PM Ticket #6176 (Error connecting to webservices) closed by Zach Pearson
fixed: Fixed in ticket #6178; UCSF IT had turned off HTTP access to …
3:30 PM Ticket #6178 (Error connecting to webservices while using Modeller) closed by Zach Pearson
fixed
3:12 PM Ticket #6187 (Uncatchable error messages making it through to ChimeraX log) created by Zach Pearson
Recently while working on #6178 and attempting to present a good error …
1:53 PM Ticket #6186 (ghosting of left eye on 3D stereo of a selected atom.) created by kenneth.satyshur@…
[…] [[Image(...)]]
7:31 AM Ticket #6185 (Crash calling signal handler) created by chimerax-bug-report@…
[…]
4:43 AM Ticket #6184 (color byattribute failure) created by r.m.vandenbos@…
[…]
4:16 AM Ticket #6183 (Sequence viewer not tracked by alignments manager) created by chimerax-bug-report@…
[…]
12:26 AM Ticket #6182 ('Combine' unexpectedly moving some atoms) created by esa-pekka.kumpula@…
[…]

Feb 15, 2022:

7:49 PM Ticket #6181 (Infinite recursion drawing alignment) created by chimerax-bug-report@…
[…]
5:56 PM Ticket #6151 (MatchMaker: wrapped C/C++ object of type QPushButton has been deleted) closed by pett
fixed: Thanks for reporting this. It is fixed in tomorrow's build. A memory …
5:39 PM Ticket #6180 (Tug mouse mode run away) closed by Tom Goddard
fixed: Fixed. Tug direction was using vector in scene coordinates where a …
5:38 PM Ticket #6177 (Timeout connecting to Modeller web service) closed by pett
duplicate: I see this issue is being handled in ticket #6178.
5:35 PM Ticket #6180 (Tug mouse mode run away) created by goddard@…
[…]
5:14 PM Ticket #6172 (camera stereo: 'NoneType' object has no attribute 'opengl_buffer) closed by pett
duplicate
4:23 PM Ticket #6179 (Crash showing Rapid Access at startup) created by hgbrown@…
[…]
3:04 PM Ticket #6178 (Error connecting to webservices while using Modeller) created by bowman.alex34@…
[…]
3:04 PM Ticket #6177 (Timeout connecting to Modeller web service) created by bowman.alex34@…
[…]
2:35 PM Ticket #6176 (Error connecting to webservices) created by chimerax-bug-report@…
[…]
1:35 PM Ticket #6175 (Stopping sim in stereo: 'NoneType' object has no attribute 'opengl_buffer') created by satyshur@…
[…]
1:32 PM Ticket #6174 (different position from commands typed vs. commands in script) created by Elaine Meng
My script rotamers.cxc does a bunch of stuff and then saves a position …
1:12 PM Ticket #6173 ('graphics restart' crash) created by satyshur@…
[…]
1:02 PM Ticket #6172 (camera stereo: 'NoneType' object has no attribute 'opengl_buffer) created by satyshur@…
[…]
12:38 PM Ticket #6171 (camera stereo: 'NoneType' object has no attribute 'opengl_buffer) created by satyshur@…
[…]
11:23 AM Ticket #6169 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
11:19 AM Ticket #6170 (Fetching mmCIF template: URL can't contain control characters) created by chimerax-bug-report@…
[…]
11:14 AM Ticket #6167 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce
11:12 AM Ticket #6166 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
11:09 AM Ticket #6162 ('forEachFile' keyword: 'foreach' has no suffix) closed by pett
not a bug: 'forEachFile' only available in 1.3+
11:01 AM Ticket #6161 (Crash opening files on Windows and/or clearing set) closed by pett
duplicate: Hi Ralph, Thanks for the report. I've got my fingers crossed that …
10:17 AM 2022-2-17 created by Tom Goddard
10:07 AM Ticket #6164 (Many pip warnings during Toolshed install) closed by Greg Couch
limitation: Those warnings were for the pip developers and were removed in pip …
9:51 AM DeveloperMeetings edited by Tom Ferrin
(diff)
3:40 AM Ticket #6169 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
3:09 AM Ticket #6168 (Demoted sequence in match_maps after residue deletion) created by Tristan Croll
[…]
2:27 AM Ticket #4812 (Selection Inspector: make bfactor/occupancy editable) reopened by Tristan Croll
Found a bug in this: when more than one atom is selected, attempting …
2:02 AM Ticket #6167 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:24 AM Ticket #6166 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

Feb 14, 2022:

10:38 PM Ticket #6165 (Graphics driver crash, macOS 10.15.7, Intel HD Graphics 4000, dual display) created by chimerax-bug-report@…
[…]
6:33 PM Ticket #6164 (Many pip warnings during Toolshed install) created by goddard@…
[…]
4:43 PM Ticket #6163 (Qt6 does not show Toolbar rollover arrows) created by goddard@…
[…]
3:35 PM Ticket #6162 ('forEachFile' keyword: 'foreach' has no suffix) created by amith.rangarajan@…
[…] RMSD-distance-final-2.cxc
3:07 PM Ticket #6136 (Wayland does not support QWindow::requestActivate()) closed by Greg Couch
nonchimerax: You will have to switch back to X11 to get it to work. I recall …
1:48 PM Ticket #6153 (Problem saving session: object of type 'SurfaceUpdaters' has no len()) closed by Tom Goddard
duplicate: This error saving sessions was fixed several months ago and is fixed …
12:20 PM Ticket #6161 (Crash opening files on Windows and/or clearing set) created by r.loring@…
[…]
11:55 AM Ticket #6148 (Infinite ctypes loop) closed by Tom Goddard
can't reproduce: Apparently crashed getting secondary structure ids when computing a …
11:39 AM Ticket #6143 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: ChimeraX using 10 GB memory.
11:34 AM Ticket #6139 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 655, ...) closed by Tom Goddard
nonchimerax: Apple graphics driver crash, dual display, high 9 GB memory use.
11:31 AM Ticket #6160 (Allow AlphaFold Colab run to be rejoined by a new ChimeraX session) created by Tom Goddard
Since AlphaFold runs take a long time, the user may quit ChimeraX or …
11:28 AM Ticket #6137 (Crash during AlphaFold prediction) closed by Tom Goddard
can't reproduce: When ChimeraX crashes during alphafold prediction on google colab the …
11:10 AM Ticket #6155 (Crash opening files on Windows) closed by pett
duplicate: Hi Ralph, Thanks for reporting the problem. We have gotten quite a …
10:58 AM Ticket #6159 (Access denied saving command history) closed by pett
nonchimerax
10:55 AM Ticket #6157 (Coulombic failure with UNK chains) closed by pett
duplicate
10:47 AM Ticket #6156 (Problem destroying status bar: wrapped C/C++ object of type QScreen ...) closed by pett
duplicate
10:37 AM Ticket #6154 (Problem restoring session: invalid load key) closed by pett
duplicate: Hi Disha, This problem occurs when trying to open a session made with …
10:30 AM Ticket #6152 (Crash after running MatchMaker) closed by pett
can't reproduce
9:38 AM Ticket #6150 (ISOLDE symmetry handler: Spgr_descr: No such HM symbol) closed by Tristan Croll
duplicate: This, too, should be fixed if you update to 1.3. Please let me know if …
9:34 AM Ticket #6149 (Crash possibly in open dialog on Windows restoring a session) closed by pett
can't reproduce: Was also in a return statement in _compression.py
9:29 AM Ticket #6146 (Crash in open dialog on Windows) closed by pett
can't reproduce: Also supposedly incrementing self._block_redraw_count
9:12 AM Ticket #6144 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
9:07 AM Ticket #6141 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
8:38 AM Ticket #6159 (Access denied saving command history) created by chimerax-bug-report@…
[…]
5:20 AM Ticket #6158 (Open BILD file: float division by zero) created by venkatareddy@…
[…]

Feb 13, 2022:

11:10 PM Ticket #6157 (Coulombic failure with UNK chains) created by chimerax-bug-report@…
[…]
4:41 PM Ticket #6156 (Problem destroying status bar: wrapped C/C++ object of type QScreen ...) created by chimerax-bug-report@…
[…]
1:24 PM Ticket #6155 (Crash opening files on Windows) created by rhloring@…
[…]
7:29 AM Ticket #6154 (Problem restoring session: invalid load key) created by disha-gajanan.hiregange@…
[…]

Feb 12, 2022:

1:00 PM Ticket #6153 (Problem saving session: object of type 'SurfaceUpdaters' has no len()) created by stuti_sharma@…
[…]
10:17 AM Ticket #6152 (Crash after running MatchMaker) created by chimerax-bug-report@…
[…]
9:09 AM Ticket #6151 (MatchMaker: wrapped C/C++ object of type QPushButton has been deleted) created by martti.tolvanen@…
[…]

Feb 11, 2022:

2:13 PM Ticket #6150 (ISOLDE symmetry handler: Spgr_descr: No such HM symbol) created by mks131@…
[…]
12:06 PM Ticket #6149 (Crash possibly in open dialog on Windows restoring a session) created by chimerax-bug-report@…
[…]
11:39 AM Ticket #6148 (Infinite ctypes loop) created by chimerax-bug-report@…
[…]
11:01 AM Ticket #6147 (Make bundle and manager/provider initialize in predictable order) created by Tom Goddard
Tristan spent immense effort debugging a startup crash #6131 which was …
10:13 AM Ticket #6146 (Crash in open dialog on Windows) created by chimerax-bug-report@…
[…]
9:27 AM Ticket #6131 (Intermittent crash involving atom copying) closed by pett
fixed
7:16 AM Ticket #6145 (Crash on Windows using File→Open) created by ieva.drulyte@…
[…]
7:02 AM Ticket #6144 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
7:00 AM Ticket #6143 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
6:45 AM Ticket #6142 (ISOLDE: various errors) created by mks131@…
[…]
6:39 AM Ticket #6141 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
4:58 AM Ticket #6140 (Crash drawing side view during alphafold prediction) created by chimerax-bug-report@…
[…]
2:50 AM Ticket #6139 (Graphics driver crash, macOS 10.15.7, Intel Iris Plus Graphics 655, ...) created by chimerax-bug-report@…
[…]
2:37 AM Ticket #6138 (Crash drawing side view) created by elzbieta.wator@…
[…]

Feb 10, 2022:

10:48 PM Ticket #6137 (Crash during AlphaFold prediction) created by chimerax-bug-report@…
[…]
8:25 PM Ticket #6136 (Wayland does not support QWindow::requestActivate()) created by soon.hyouk@…
[…]
7:32 PM 2022-2-10 edited by Tom Goddard
(diff)
7:23 PM Dev2022-2-10 edited by Tom Goddard
(diff)
7:23 PM Dev2022-2-10 edited by Tom Goddard
(diff)
7:03 PM Ticket #6135 (Qt shim missing QFileDialog enum) closed by Tom Goddard
can't reproduce: I'm baffled. Hitting the Browse button in the Advanced tab of the …
6:47 PM Ticket #6134 (Graphics driver crash, macOS 11.6.1, Intel Iris Graphics 6100, dual display) closed by Tom Goddard
nonchimerax
6:31 PM Ticket #6130 (Crash in GL.glDrawElementsInstanced after shader buffer is None) closed by Tom Goddard
nonchimerax: Crashed in OpenGL rendering at […] which is this line of code …
6:24 PM Ticket #6127 (Qt6 crash) closed by Tom Goddard
can't reproduce: Claims to have crashed in "SLSIsDisplayChangedSeedValid" (no google …
5:52 PM Ticket #6133 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
5:48 PM Ticket #6132 (File → Set Working Folder → CRASH) closed by pett
can't reproduce: Hi Soon, Thanks for reporting this problem. We have never been able …
4:26 PM Ticket #6123 (ChimeraX exited and crashed during machine sleep) closed by Tom Goddard
can't reproduce: Hi Randy, We have seen a few reports of ChimeraX crashing after …
2:28 PM Ticket #6135 (Qt shim missing QFileDialog enum) created by Zach Pearson
[…]
12:57 PM ChangeLog edited by Elaine Meng
(diff)
11:41 AM Ticket #6134 (Graphics driver crash, macOS 11.6.1, Intel Iris Graphics 6100, dual display) created by chimerax-bug-report@…
[…]
10:12 AM Ticket #6129 (Crash in return statement after session save) closed by pett
can't reproduce: No alphafold usage in this one, though as an interesting side note a …
9:53 AM Ticket #6126 (Unknown crash at startup) closed by pett
can't reproduce
9:51 AM Ticket #6125 (Session restore: invalid load key, '\x04') closed by pett
duplicate
9:27 AM Ticket #6124 (Crash in return statement or in atomic change_tracker_changes()) closed by pett
can't reproduce: alphafold search/fetch had been done earlier
9:20 AM Ticket #6133 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
8:59 AM Ticket #6132 (File → Set Working Folder → CRASH) created by soon.hyouk@…
[…]
6:52 AM Ticket #6131 (Intermittent crash involving atom copying) created by Tristan Croll
[…]
4:47 AM Ticket #6130 (Crash in GL.glDrawElementsInstanced after shader buffer is None) created by chimerax-bug-report@…
[…]
2:30 AM Ticket #6129 (Crash in return statement after session save) created by chimerax-bug-report@…
[…]
1:31 AM Ticket #6128 (Failure opening .mtz file: Spgr_cacheobj: symops fail) created by udakshi@…
[…]
12:07 AM Ticket #6127 (Qt6 crash) created by chimerax-bug-report@…
[…]

Feb 9, 2022:

4:38 PM Ticket #6126 (Unknown crash at startup) created by chimerax-bug-report@…
[…]
2:21 PM Ticket #6125 (Session restore: invalid load key, '\x04') created by chimerax-bug-report@…
[…]
1:56 PM ChangeLog edited by pett
(diff)
1:55 PM ChangeLog edited by pett
(diff)
1:55 PM ChangeLog edited by pett
(diff)
1:16 PM Ticket #6113 (combine with "close true" doesn't nuke grouping model) closed by pett
fixed: Empty parent models get closed now.
12:52 PM Ticket #6124 (Crash in return statement or in atomic change_tracker_changes()) created by chimerax-bug-report@…
[…]
11:55 AM Ticket #6123 (ChimeraX exited and crashed during machine sleep) created by rjr27@…
[…]
11:08 AM Ticket #6116 (Crash showing Rapid Access at startup) closed by pett
fixed: Glad you able to get things working. --Eric
10:50 AM Ticket #6121 (Graphics crash, macOS 10.15.7, AMD Radeon Pro 5500M) closed by Tom Goddard
nonchimerax: Unfortunately Apple's OpenGL graphics drivers are not very stable, …
10:46 AM Ticket #6120 (Crash in GL.glViewport opening file) closed by Tom Goddard
duplicate: Your previous bug report (#6119) said ChimeraX fails to start. This …
10:43 AM Ticket #6119 (Crash in GL.glViewport at startup) closed by Tom Goddard
can't reproduce: These are OpenGL errors most likely caused by bugs in your graphics …
10:36 AM Ticket #6118 (Crash in return statement) closed by pett
can't reproduce
10:33 AM Ticket #6117 (Color/depth changes based on lighting) closed by Tom Goddard
limitation: You have a brown and blue ribbon that are identical both shown. The …
5:37 AM Ticket #6122 (Registration and updating bundles failed: 'utf-8' codec can't decode byte) created by weberm@…
[…]
1:50 AM Ticket #6121 (Graphics crash, macOS 10.15.7, AMD Radeon Pro 5500M) created by Agnieszka.Obarska-Kosinska@…
[…]
1:49 AM Ticket #6120 (Crash in GL.glViewport opening file) created by weberm@…
[…]
1:47 AM Ticket #6119 (Crash in GL.glViewport at startup) created by weberm@…
[…]

Feb 8, 2022:

11:12 PM Ticket #6118 (Crash in return statement) created by chimerax-bug-report@…
[…]
10:22 PM Ticket #6117 (Color/depth changes based on lighting) created by coyote_v2002@…
[…] test.cxs
5:47 PM Ticket #6115 (Crash in return statement) closed by pett
can't reproduce
5:44 PM Ticket #6114 (Crash removing dock widget from main window) closed by pett
can't reproduce
3:24 PM Ticket #6116 (Crash showing Rapid Access at startup) created by sabarik@…
[…]
1:56 PM Ticket #6115 (Crash in return statement) created by chimerax-bug-report@…
[…]
1:36 PM Ticket #6114 (Crash removing dock widget from main window) created by chimerax-bug-report@…
[…]
12:37 PM Ticket #6113 (combine with "close true" doesn't nuke grouping model) created by Elaine Meng
We had an example with #1.1-3 grouped under #1. Both of the following …
11:33 AM Ticket #6110 (Crash creating QWebEngineProfile) closed by Tom Goddard
can't reproduce: Seen this several times, always Windows I think. Looks like Qt bug. …
11:29 AM Ticket #6111 ('DefaultApi' object has no attribute 'newer_versions') closed by Zach Pearson
duplicate: Fixed in previous ticket; if this error occurs in a daily build from …
11:25 AM Ticket #6104 (Crash clearing set while AlphaFold prediction running) closed by Tom Goddard
can't reproduce: […] Seen this crash while AlphaFold running lots of times. The …
11:22 AM Ticket #6109 (Crash opening PDB file) closed by pett
can't reproduce: Opening 2bbv in PDB format in 1.3 works for me. The report is for …
11:11 AM Ticket #6107 (Error during MPEG encoding: No space left on device) closed by pett
nonchimerax
10:50 AM Ticket #6112 (No vseries help) created by goddard@…
[…]
10:13 AM 2022-2-10 created by Tom Goddard
10:12 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:33 AM Ticket #6111 ('DefaultApi' object has no attribute 'newer_versions') created by chimerax-bug-report@…
[…]
4:43 AM Ticket #6110 (Crash creating QWebEngineProfile) created by chimerax-bug-report@…
[…]

Feb 7, 2022:

11:12 PM Ticket #6109 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
10:43 PM Ticket #6108 (Crash showing Rapid Access at startup) created by venkatareddy@…
[…]
8:23 PM Ticket #6107 (Error during MPEG encoding: No space left on device) created by chimerax-bug-report@…
[…]
7:31 PM Ticket #6106 (Efficiently select maps by visual inspection) created by olibclarke@…
Oliver visually inspects up to 50 aligned maps to find some with …
4:13 PM Ticket #6105 (AlphaFold fails in hhblits making sequence alignment) created by Tom Goddard
AlphaFold 2.1.1 fails with an error in hhblits, for example, with the …
3:44 PM Ticket #6104 (Crash clearing set while AlphaFold prediction running) created by chimerax-bug-report@…
[…]
3:29 PM Ticket #6103 (Graphics driver crash, macOS 10.14.6, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax
3:27 PM Ticket #6100 (Graphics driver crash, macOS 10.14.6, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax
3:25 PM Ticket #6097 (Graphics driver crash, macOS 12.1, Intel Iris Plus Graphics 645, dual ...) closed by Tom Goddard
nonchimerax
3:22 PM Ticket #6096 (Crash showing Rapid Access at startup) closed by Tom Goddard
duplicate: This crash in ChimeraX at startup on Linux is a Qt window toolkit bug. …
3:19 PM Ticket #6092 (Problem parsing alphafold match command) closed by Tom Goddard
duplicate: Fixed 5 months ago. #5186
3:12 PM Ticket #6080 (Problem destroying status bar: wrapped C/C++ object of type QScreen ...) closed by Tom Goddard
duplicate: This was fixed long ago and our current ChimeraX 1.3 does not have …
1:12 PM Ticket #6076 (Crash during alphafold predict updating clip caps) closed by Tom Goddard
can't reproduce: […] In showing clip caps call […] User was running an …
12:59 PM Ticket #6102 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
12:55 PM Ticket #6098 (Percent character in file name throws off model info logging) closed by pett
fixed: Hi Jim! Thanks for reporting this. The '%' character in the file …
12:50 PM Ticket #6075 ('None' in self.maps) closed by Tom Goddard
fixed: Fixed. Trying to save a map series after you closed some of the maps …
12:43 PM Ticket #6103 (Graphics driver crash, macOS 10.14.6, Intel UHD Graphics 617) created by chimerax-bug-report@…
[…]
11:30 AM Ticket #6102 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
11:23 AM Ticket #6101 (Add residue name and number popup in VR) created by phil.cruz@…
Would like pointing at an atom or ribbon to popup the residue name and …
11:21 AM Ticket #6100 (Graphics driver crash, macOS 10.14.6, Intel UHD Graphics 617) created by chimerax-bug-report@…
[…]
11:19 AM Ticket #6099 (Toolbar button to save a session in VR) created by phil.cruz@…
Would like a toolbar button to save a session on the desktop like the …
10:13 AM Ticket #6098 (Percent character in file name throws off model info logging) created by jprocter@…
[…] Q9ZTS2_48-144%3A4zhp.1.A11713814924521180142.pdb
9:33 AM Ticket #6097 (Graphics driver crash, macOS 12.1, Intel Iris Plus Graphics 645, dual ...) created by chimerax-bug-report@…
[…]
9:16 AM Ticket #6094 (Crash in event loop) closed by pett
can't reproduce
9:15 AM Ticket #6093 (Crash in garbage collection during new-object allocation) closed by pett
duplicate
9:10 AM Ticket #6091 (alt locs not copied) closed by pett
duplicate
9:00 AM Ticket #6090 (Crash while fetching SMILES structure) closed by pett
can't reproduce
8:37 AM Ticket #6096 (Crash showing Rapid Access at startup) created by chenj159@…
[…]
5:20 AM Ticket #6095 ((ISOLDE?) segmentation fault) created by andrea.smith@…
[…]
4:43 AM Ticket #6094 (Crash in event loop) created by chimerax-bug-report@…
[…]

Feb 6, 2022:

6:13 PM Ticket #6093 (Crash in garbage collection during new-object allocation) created by chimerax-bug-report@…
[…]
3:10 PM Ticket #6092 (Problem parsing alphafold match command) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.