Opened 4 years ago

Closed 4 years ago

#6290 closed defect (can't reproduce)

Crash in QOpenGLContext.makeCurrent()

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett) 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19043
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program FileWindows fatal exception: code 0xs\8001010e

ChWindows fatal exception: icode 0xm8001010ee

rWindows fatal exception: acode 0xX8001010e 

1Windows fatal exception: .code 0x38001010e\

bWindows fatal exception: icode 0xn8001010e

\Windows fatal exception: lcode 0xi8001010eb

\sWindows fatal exception: code 0x8001010eit

eWindows fatal exception: code 0x-p8001010e

acWindows fatal exception: kcode 0xa8001010eg

eWindows fatal exception: scode 0x\8001010ec

hWindows fatal exception: icode 0xm8001010ee

rax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010es

\Windows fatal exception: Ccode 0xh8001010ei

mWindows fatal exception: ecode 0xr8001010eaX

 1Windows fatal exception: .code 0x38001010e\

bWindows fatal exception: icode 0xn8001010e\

liWindows fatal exception: bcode 0x\8001010es

itWindows fatal exception: ecode 0x-8001010ep

acWindows fatal exception: kcode 0xa8001010eg

es\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\ProWindows fatal exception: gcode 0xr8001010ea

m Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eC

hWindows fatal exception: icode 0xm8001010ee

rWindows fatal exception: acode 0xX8001010e 

1Windows fatal exception: .code 0x38001010e\

bWindows fatal exception: icode 0xn8001010e\

lWindows fatal exception: icode 0xb8001010e\

sWindows fatal exception: icode 0xte8001010e-

pWindows fatal exception: acode 0xc8001010ek

aWindows fatal exception: gcode 0xe8001010es

\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\PWindows fatal exception: rcode 0xo8001010eg

ramWindows fatal exception:  Fcode 0x8001010ei

lesWindows fatal exception: \code 0xC8001010ehi

meWindows fatal exception: rcode 0xa8001010eX

 1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\l8001010ei

b\Windows fatal exception: scode 0xi8001010et

eWindows fatal exception: -code 0xp8001010ea

cWindows fatal exception: kcode 0xa8001010eg

eWindows fatal exception: scode 0x\8001010ec

hWindows fatal exception: icode 0xm8001010ee

rax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_Windows fatal exception: fcode 0xi8001010el

e_Windows fatal exception: dcode 0xi8001010ea

lWindows fatal exception: ocode 0xg8001010e


  File Windows fatal exception: "code 0xC8001010e:

\Windows fatal exception: Pcode 0xr8001010eo

gWindows fatal exception: rcode 0xa8001010em

 Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eC

hWindows fatal exception: icode 0xm8001010ee

rWindows fatal exception: acode 0xX8001010e 

1Windows fatal exception: .code 0x38001010e\

bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packWindows fatal exception: acode 0xg8001010ee

s\Windows fatal exception: Ccode 0xh8001010ei

mWindows fatal exception: ecode 0xr8001010ea

XWindows fatal exception: _code 0xm8001010ea

iWindows fatal exception: ncode 0x.8001010ep

yWindows fatal exception: "code 0x, line 8001010e867

 in Windows fatal exception: icode 0xn8001010ei

tWindows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iles\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in shoWindows fatal exception: wcode 0x_8001010eo

penWindows fatal exception: _code 0xf8001010ei

leWindows fatal exception: _code 0xd8001010ei

alWindows fatal exception: ocode 0xg8001010e


  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: code 0xo8001010egr

amWindows fatal exception:  code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010er

aX Windows fatal exception: 1code 0x.38001010e\

biWindows fatal exception: ncode 0x\8001010el

ib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeWindows fatal exception: rcode 0xa8001010eX

 1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: bcode 0x\8001010es

itWindows fatal exception: ecode 0x-8001010ep

acWindows fatal exception: kcode 0xa8001010eg

esWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ecode 0xra8001010eX_

maWindows fatal exception: icode 0xn8001010e.

pyWindows fatal exception: "code 0x, line 8001010e1018

 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.pyWindows fatal exception: "code 0x, line 8001010e197

 in _Windows fatal exception: rcode 0xu8001010en

_mWindows fatal exception: ocode 0xd8001010eu

leWindows fatal exception: _acode 0xs8001010e_

maWindows fatal exception: icode 0xn8001010e


Windows fatal exception: Thread 0xcode 0x000013508001010e (most recent call first):


  File "Windows fatal exception: Ccode 0x:8001010e\

PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e 

FWindows fatal exception: icode 0xl8001010ee

sWindows fatal exception: code 0x\8001010eC

himeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packWindows fatal exception: acode 0xg8001010ee

s\cWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010ex

\Windows fatal exception: ocode 0xp8001010ee

nWindows fatal exception: _code 0xc8001010eo

mWindows fatal exception: mcode 0xa8001010en

dWindows fatal exception: \code 0xd8001010ei

aWindows fatal exception: lcode 0xo8001010eg

.Windows fatal exception: pcode 0xy8001010e"

, line Windows fatal exception: 107code 0x in 8001010e
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _runWindows fatal exception: _code 0xc8001010eo

de
  File "Windows fatal exception: Ccode 0x:8001010e\

PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e 

FWindows fatal exception: icode 0xl8001010ee

sWindows fatal exception: \code 0xC8001010eh

iWindows fatal exception: mcode 0xe8001010er

aWindows fatal exception: Xcode 0x 8001010e1

.Windows fatal exception: 3code 0x\8001010eb

inWindows fatal exception: \code 0xl8001010ei

bWindows fatal exception: \code 0xr8001010eu

npy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Windows fatal exception: Thread 0xcode 0x000013508001010e (most recent call first):


  File "Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

am Windows fatal exception: Fcode 0xi8001010el

esWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ercode 0xa8001010eX

 1Windows fatal exception: .code 0x38001010e\

biWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: bcode 0x\8001010es

itWindows fatal exception: ecode 0x-8001010ep

aWindows fatal exception: ccode 0xk8001010ea

ges\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChWindows fatal exception: icode 0xm8001010eer

aXWindows fatal exception: _code 0xm8001010ea

iWindows fatal exception: ncode 0x.8001010ep

yWindows fatal exception: "code 0x, line 8001010e1018

 in Windows fatal exception: Windows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010es

\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _ruWindows fatal exception: code 0xn8001010e_

codWindows fatal exception: ecode 0x
8001010e  File 

"CWindows fatal exception: :code 0x\8001010eP

roWindows fatal exception: gcode 0xr8001010ea

m Windows fatal exception: Fcode 0xi8001010el

esWindows fatal exception: \code 0xC8001010eh

imWindows fatal exception: ecode 0xr8001010ea

X Windows fatal exception: 1code 0x.8001010e3

\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: lcode 0xi8001010eb

\Windows fatal exception: rcode 0xu8001010en

py.py", line Windows fatal exception: 197code 0x in 8001010e_

runWindows fatal exception: _code 0xm8001010eo

duWindows fatal exception: lcode 0xe8001010e_

aWindows fatal exception: scode 0x_8001010em

aiWindows fatal exception: ncode 0x
8001010e

Windows fatal exception: Thread 0xcode 0x000013508001010e (most recent call first):


  File Windows fatal exception: "code 0x8001010eC

:\PWindows fatal exception: rcode 0xo8001010eg

rWindows fatal exception: acode 0xm8001010e 

FWindows fatal exception: icode 0xl8001010ee

s\ChimeraX 1.3\bin\lib\siWindows fatal exception: tcode 0xe8001010e-

pWindows fatal exception: acode 0xc8001010ek

aWindows fatal exception: gcode 0xe8001010es

\Windows fatal exception: ccode 0xh8001010ei

mWindows fatal exception: ecode 0xr8001010ea

xWindows fatal exception: \code 0xo8001010ep

eWindows fatal exception: ncode 0x_8001010ec

oWindows fatal exception: mcode 0xm8001010ea

nWindows fatal exception: dcode 0x\8001010ed

iWindows fatal exception: acode 0xl8001010eo

gWindows fatal exception: .code 0xp8001010ey

", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraWindows fatal exception: Xcode 0x 8001010e1

.3Windows fatal exception: \code 0xb8001010ei

nWindows fatal exception: \code 0xl8001010ei

bWindows fatal exception: \code 0xs8001010ei

tWindows fatal exception: ecode 0x-8001010ep

aWindows fatal exception: ccode 0xk8001010ea

gWindows fatal exception: ecode 0xs8001010e\

cWindows fatal exception: hicode 0xm8001010ee

raWindows fatal exception: xcode 0x\8001010eo

pWindows fatal exception: ecode 0xn8001010e_

cWindows fatal exception: ocode 0xm8001010em

and\dialog.py", line Windows fatal exception: 107code 0x in 8001010eWindows fatal exception: code 0x
8001010e  File 

"Windows fatal exception: Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

ilWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 1Windows fatal exception: code 0x.8001010e3

\bWindows fatal exception: icode 0xn8001010e\

lib\site-packages\chimerax\ui\gui.py", line 301Windows fatal exception:  in code 0xe8001010ev

enWindows fatal exception: tcode 0x_8001010el

oopWindows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010e

sWindows fatal exception: \code 0xC8001010eh

iWindows fatal exception: mcode 0xe8001010er

aWindows fatal exception: Xcode 0x 8001010e1

.Windows fatal exception: code 0x38001010e\

bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\PrWindows fatal exception: code 0xo8001010eg

ramWindows fatal exception:  code 0xF8001010ei

lWindows fatal exception: Windows fatal exception: code 0xcode 0xe8001010es

8001010e\

ChWindows fatal exception: icode 0xWindows fatal exception: 8001010ecode 0xm

8001010ee

rWindows fatal exception: Windows fatal exception: code 0xcode 0xa8001010eX

 8001010e1

.Windows fatal exception: 3Windows fatal exception: code 0x\code 0x8001010e8001010e

b

iWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010en8001010e

\

lWindows fatal exception: Windows fatal exception: icode 0xb8001010e\

scode 0xiWindows fatal exception: tcode 0x8001010e8001010e

e

-Windows fatal exception: Windows fatal exception: pcode 0xacode 0xc8001010e8001010ek

a

Windows fatal exception: gcode 0xe8001010eWindows fatal exception: scode 0x\8001010e



Windows fatal exception: cWindows fatal exception: hcode 0xcode 0xi8001010e8001010e



mWindows fatal exception: ecode 0xr8001010ea

x\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py"Windows fatal exception: , line code 0x10188001010e in 

8001010e


  File Windows fatal exception: "code 0xC8001010e:

\Windows fatal exception: Pcode 0xr8001010e

oWindows fatal exception: gcode 0xr8001010ea

mWindows fatal exception:  code 0xF8001010ei

lWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 Windows fatal exception: 1code 0x.8001010e3

\bin\libWindows fatal exception: \code 0xr8001010eu

npWindows fatal exception: ycode 0x.8001010ep

yWindows fatal exception: "code 0x, line 8001010e87

 in Windows fatal exception: _code 0xr8001010eu

nWindows fatal exception: _code 0xc8001010eo

dWindows fatal exception: ecode 0x
8001010e  File 

"Windows fatal exception: Ccode 0x:8001010e\

PWindows fatal exception: rcode 0xo8001010eg

raWindows fatal exception: mcode 0x 8001010eF

iWindows fatal exception: lcode 0xe8001010es

\Windows fatal exception: Ccode 0xh8001010ei

meraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "CWindows fatal exception: :code 0x\8001010eP

rogWindows fatal exception: rcode 0xa8001010em

 Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eC

hiWindows fatal exception: mcode 0xe8001010eWindows fatal exception: 

rWindows fatal exception: acode 0xcode 0xX8001010e8001010e 

1Windows fatal exception: .code 0x

8001010e3

Windows fatal exception: Windows fatal exception: code 0xcode 0x\8001010eb8001010e

iWindows fatal exception: n

\code 0xlWindows fatal exception: 8001010ei

bcode 0x\8001010esWindows fatal exception: icode 0x

t8001010eWindows fatal exception: e

-Windows fatal exception: pcode 0xacode 0xc8001010ek

aWindows fatal exception: gcode 0x8001010ee

s8001010e\

[deleted a lot of this]

  File Windows fatal exception: "Ccode 0x:8001010e\

PrWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mcode 0x 8001010eF

ilWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 Windows fatal exception: 1code 0x.8001010e3

\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: lWindows fatal exception: icode 0xb8001010e\code 0xs8001010e



iWindows fatal exception: tcode 0xe8001010e

-Windows fatal exception: pcode 0xa8001010ec

kWindows fatal exception: acode 0xg8001010ee

sWindows fatal exception: \code 0xC8001010eh

iWindows fatal exception: mcode 0xe8001010er

aWindows fatal exception: Xcode 0x_8001010em

aWindows fatal exception: icode 0xn8001010e.

pWindows fatal exception: ycode 0x"8001010e, line 

867Windows fatal exception:  in code 0xi8001010en

iWindows fatal exception: tcode 0x
8001010e  File 

"C:\PrWindows fatal exception: ocode 0xg8001010er

amWindows fatal exception:  code 0xF8001010ei

lWindows fatal exception: ecode 0xs8001010e\

CWindows fatal exception: hcode 0xi8001010em

eWindows fatal exception: rcode 0xa8001010eX

 Windows fatal exception: 1code 0x.8001010e3

\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: lcode 0xi8001010eb

\Windows fatal exception: scode 0xi8001010et

eWindows fatal exception: -code 0xp8001010ea

cWindows fatal exception: kcode 0xa8001010e

ges\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threaWindows fatal exception: code 0xd8001010ei

ng.Windows fatal exception: pcode 0xy8001010e"

, line Windows fatal exception: 574code 0x in 8001010ew

aWindows fatal exception: icode 0xt8001010e


  File Windows fatal exception: "code 0xC8001010e:

\Windows fatal exception: Pcode 0xr8001010eo

gWindows fatal exception: rcode 0xa8001010em

 Windows fatal exception: Fcode 0xi8001010el

eWindows fatal exception: scode 0x\8001010eWindows fatal exception: 

code 0xWindows fatal exception: 8001010ecode 0x

8001010e

CWindows fatal exception: hcode 0xiWindows fatal exception: 8001010emcode 0xe8001010er



aXWindows fatal exception:  code 0x18001010e.

3\Windows fatal exception: bcode 0xi8001010en

\Windows fatal exception: code 0xl8001010ei

bWindows fatal exception: \code 0xt8001010eh

rWindows fatal exception: ecode 0xa8001010ed

iWindows fatal exception: ncode 0xg8001010e.

pWindows fatal exception: ycode 0x"8001010e, line 

1284Windows fatal exception:  in code 0xr8001010eu

nWindows fatal exception: 
code 0x  File 8001010e"

C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in runWindows fatal exception: 
code 0x  File 8001010e"

C:Windows fatal exception: \code 0xP8001010er

oWindows fatal exception: gcode 0xr8001010ea

mWindows fatal exception:  code 0xF8001010ei

leWindows fatal exception: scode 0x\8001010eC

hWindows fatal exception: imcode 0xe8001010er

aWindows fatal exception: Xcode 0x 8001010e1

.Windows fatal exception: 3code 0x\8001010eb

iWindows fatal exception: ncode 0x\8001010el

iWindows fatal exception: bcode 0x\8001010et

hWindows fatal exception: rcode 0xe8001010e

ading.py", line 973 in Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e_bootstrap

_inWindows fatal exception: ncode 0x8001010e

Windows fatal exception: code 0x8001010ee

rWindows fatal exception: 
code 0x  File 8001010e"

CWindows fatal exception: :code 0x\8001010eP

rWindows fatal exception: ocode 0xg8001010er

aWindows fatal exception: mWindows fatal exception:  code 0xFcode 0xi8001010el

8001010eeWindows fatal exception: scode 0x

\C8001010eWindows fatal exception: h

code 0xiWindows fatal exception: mcode 0x8001010ee

rWindows fatal exception: acode 0xX 8001010e1

.3Windows fatal exception: \8001010eb

incode 0x\8001010el

ibWindows fatal exception: \code 0xt8001010eh

rWindows fatal exception: ecode 0xa8001010ed

iWindows fatal exception: ncode 0xg8001010e.

pWindows fatal exception: ycode 0x"8001010e, line 

930Windows fatal exception:  in code 0x_8001010eb

oWindows fatal exception: ocode 0xt8001010es

tWindows fatal exception: rcode 0xa8001010ep


Windows fatal exception: 
code 0xThread 0x8001010e00001350

 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x00000964 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap

Thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation

Current thread 0x00001350 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 111 in make_current
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 490 in make_current
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 104 in _use_opengl
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 139 in draw
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 73 in draw_new_frame
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 158 in update_graphics_now
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\graphics.py", line 145 in resizeEvent
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\graphics.py", line 57 in event
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
> ui tool show "Color Actions"

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\5uak\5UAK.pdb" format pdb

5UAK.pdb title:  
Dephosphorylated, atp-free human cystic fibrosis transmembrane conductance
regulator (CFTR) [more info...]  
  
Chain information for 5UAK.pdb #1  
---  
Chain | Description | UniProt  
A | cystic fibrosis transmembrane conductance regulator | CFTR_HUMAN  
R | cystic fibrosis transmembrane conductance regulator |  
  

> set bgColor white

> select :1-388

3233 atoms, 3302 bonds, 403 residues, 1 model selected  

> color sel #FF8000

> select :838-1201

2445 atoms, 2506 bonds, 1 pseudobond, 304 residues, 2 models selected  

> color sel #00FF00

> select :389-673

1737 atoms, 1766 bonds, 1 pseudobond, 221 residues, 2 models selected  

> color sel #991999

> select :1202-1480

1817 atoms, 1848 bonds, 230 residues, 1 model selected  

> color sel #3380CC

> select :163, 164, 165, 167

32 atoms, 30 bonds, 4 residues, 1 model selected  

> color sel red

> select :168, 169, 171, 172, 177

35 atoms, 32 bonds, 5 residues, 1 model selected  

> color sel yellow

> select :166, 170, 173, 174, 175, 176, 178

55 atoms, 51 bonds, 7 residues, 1 model selected  

> color sel blue

> select :148-193

366 atoms, 368 bonds, 46 residues, 1 model selected  

> select ~sel

8866 atoms, 9055 bonds, 4 pseudobonds, 1112 residues, 2 models selected  

> transparency sel 90 target c

> hide sel cartoons

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_ERexit.tif" width 699
> height 566 supersample 3

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_ERexit.cxs"

> select :163, 164, 165, 166, 167, 170

52 atoms, 50 bonds, 6 residues, 1 model selected  

> color sel red

> select :168, 169, 172, 177

28 atoms, 25 bonds, 4 residues, 1 model selected  

> color sel yellow

> select :171, 173, 174, 175, 176, 178

42 atoms, 39 bonds, 6 residues, 1 model selected  

> color sel blue

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_neg_Erexit.tif" width 699 height
> 566 supersample 3

> select :163, 164, 165, 167

32 atoms, 30 bonds, 4 residues, 1 model selected  

> color sel red

> select :168, 172, 177

22 atoms, 19 bonds, 3 residues, 1 model selected  

> color sel yellow

> select :173, 174, 175, 176, 178

35 atoms, 33 bonds, 5 residues, 1 model selected  

> color sel blue

> select :166, 169, 170, 171

33 atoms, 31 bonds, 4 residues, 1 model selected  

> color sel cyan

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_neg_ERexit.tif" width 699
> height 566 supersample 3

> cartoon style coil xsection oval

> cartoon style xsection barbell modeHelix default

> cartoon style xsection oval modeHelix default

> cartoon style xsection rectangle modeHelix default

> cartoon style modeHelix tube sides 20

> cartoon style xsection oval modeHelix default

> hide (protein|nucleic) target a

> cartoon hide

> show backbone target ab

> hide (protein|nucleic) target a

> cartoon hide

> show ((protein&@ca)|(nucleic&@p)) target ab

> style ringFill thin

Changed 1158 residue ring styles  

> hide atoms

> show cartoons

> hide cartoons

> hide atoms

> show atoms

> hide (protein|nucleic) target a

> cartoon hide

> show backbone target ab

> hide (protein|nucleic) target a

> cartoon hide

> show ((protein&@ca)|(nucleic&@p)) target ab

> hide atoms

> show cartoons

> preset cartoons/nucleotides licorice/ovals

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh default arrows f x round width 1 thick 1
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides tube/slab shape ellipsoid

  

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\5uak\5UAK.pdb" format pdb

5UAK.pdb title:  
Dephosphorylated, atp-free human cystic fibrosis transmembrane conductance
regulator (CFTR) [more info...]  
  
Chain information for 5UAK.pdb #1  
---  
Chain | Description | UniProt  
A | cystic fibrosis transmembrane conductance regulator | CFTR_HUMAN  
R | cystic fibrosis transmembrane conductance regulator |  
  

> select :140-190

401 atoms, 406 bonds, 51 residues, 1 model selected  

> set bgColor white

> select ~sel

8831 atoms, 9017 bonds, 4 pseudobonds, 1107 residues, 2 models selected  

> select hid

Expected an objects specifier or a keyword  

> select hide c

Expected an objects specifier or a keyword  

> hide se c

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide sel cartoons

> preset cartoons/nucleotides licorice/ovals

Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh default arrows f x round width 1 thick 1
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides tube/slab shape ellipsoid

  

> select :140-200

480 atoms, 488 bonds, 61 residues, 1 model selected  

> hide sel cartoons

> select ~sel

8752 atoms, 8935 bonds, 4 pseudobonds, 1097 residues, 2 models selected  

> hide sel cartoons

> color (#!1 & sel) light gray

> ui tool show "Color Actions"

> color sel light gray target c

> color sel gray target c

> color sel dark gray target a

> color sel gray target s

> select ~sel

480 atoms, 488 bonds, 61 residues, 1 model selected  

> color sel light gray target c

> color sel gray target c

> color sel dim gray target c

> color sel dark gray target c

> color sel black target c

> color sel dark gray target c

> select :179-200

172 atoms, 174 bonds, 22 residues, 1 model selected  

> transparency sel 90 target c

> undo

> color sel dark gray

> show border

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/20220302_5uak_ICL1_lysine_ERexit.cxs"

opened ChimeraX session  

> select :all

Nothing selected  

> select :1-1480

9232 atoms, 9423 bonds, 4 pseudobonds, 1158 residues, 2 models selected  

> show sel atoms

> hide sel atoms

> show sel cartoons

> select :358-395

319 atoms, 324 bonds, 38 residues, 1 model selected  

> transparency target 0 sel c

Missing or invalid "percent" argument: Expected a number  

> transparency sel target 0 c

Missing or invalid "percent" argument: Expected a number  

> transparency sel 0 target c

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_contacts.pb"

Opened Pseudobonds 20220227_pseudobonds_contacts.pb, 42 bonds  

> undo

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.cxs"

> select :1-100

906 atoms, 926 bonds, 115 residues, 1 model selected  

> transparency sel 100 target c

> transparency sel 90 target c

> transparency sel 95 target c

> transparency sel 100 target c

> select: 163, 168, 375, 377, 378

Unknown command: select: 163, 168, 375, 377, 378  

> show sel atoms

> select :163, 168, 375, 377, 378

41 atoms, 37 bonds, 5 pseudobonds, 5 residues, 2 models selected  

> show sel atoms

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_ChimeraX_5UAK_H-bonds.txt"

Unrecognized file suffix '.txt'  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_H.pb"

Opened Pseudobonds 20220227_pseudobonds_H.pb, 5 bonds  

> select clear

> select :163, 168, 375, 377, 378, 379

50 atoms, 46 bonds, 9 pseudobonds, 6 residues, 3 models selected  

> show sel atoms

> select clear

> select :163, 166, 168, 375, 377, 378, 379

59 atoms, 54 bonds, 11 pseudobonds, 7 residues, 3 models selected  

> show sel atoms

> select :166

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel atoms

> select :377

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel atoms

> ui tool show Contacts

> contacts sel resSeparation 5 log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    0 contacts
    atom1  atom2  overlap  distance
    

  
No contacts  

> select :379

9 atoms, 8 bonds, 1 residue, 1 model selected  

> ui tool show Contacts

> contacts sel resSeparation 5 log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    2 contacts
        atom1         atom2      overlap  distance
    /A GLU 379 CB  /A LYS 166 O   0.148    3.152
    /A GLU 379 CA  /A LYS 166 O   -0.059    3.359
    

  
2 contacts  

> view sel

> undo

> select :163, 166, 168, 375, 377

41 atoms, 36 bonds, 4 pseudobonds, 5 residues, 3 models selected  

> view sel

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.cxs"

> cofr sel

> ui tool show "Side View"

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.cxs"

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.tif" width 701
> height 572 supersample 3

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_TMD1-NBD1.tif" width 701
> height 572 supersample 3

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\20220302_5uak_ICL1_lysine_ERexit.cxs" format
> session

opened ChimeraX session  

> view

> hide sel cartoons

> show sel cartoons

> select :1040-1090

427 atoms, 441 bonds, 51 residues, 1 model selected  

> transparency sel 0 target c

> select :165, 166, 167, 172, 177, 1065, 1075, 1071, 1066, 1062, 1059

94 atoms, 86 bonds, 11 residues, 1 model selected  

> show sel atoms

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_contacts.pb"

Opened Pseudobonds 20220227_pseudobonds_contacts.pb, 42 bonds  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_H.pb"

Opened Pseudobonds 20220227_pseudobonds_H.pb, 5 bonds  

> view sel

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4_contacts.pb"

Opened Pseudobonds 20220302_5uak_ICL1_ICL4_contacts.pb, 40 bonds  

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4.cxs"

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\5uak\20220302_5uak_ICL1_ICL4.cxs" format session

opened ChimeraX session  

> close #2

> close #3

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4_H-bonds.pb"

Opened Pseudobonds 20220302_5uak_ICL1_ICL4_H-bonds.pb, 3 bonds  

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4.cxs"

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4.tif" width 701 height
> 572 supersample 3

> close session

> open "E:\Dropbox\PhD\Research\4 Manuscripts\CFTR Domain
> Assembly\Data\Structural\20220302_5uak_ICL1_lysine_ERexit.cxs" format
> session

opened ChimeraX session  

> hide sel cartoons

> show sel cartoons

> select :173, 169

14 atoms, 12 bonds, 2 residues, 1 model selected  

> select :169, 173, 474, 401

37 atoms, 35 bonds, 4 residues, 1 model selected  

> show select atoms

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show sel atoms

> view sel

> select :399-401, 463-476

133 atoms, 134 bonds, 17 residues, 1 model selected  

> transparency sel 0 target c

> select :402

9 atoms, 8 bonds, 1 residue, 1 model selected  

> transparency sel 0 target c

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_ChimeraX_5UAK_contacts.txt"

Unrecognized file suffix '.txt'  

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220227_pseudobonds_contacts.pb"

Opened Pseudobonds 20220227_pseudobonds_contacts.pb, 42 bonds  

> close #2

> open "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_ICL4_contacts.pb"

Opened Pseudobonds 20220302_5uak_ICL1_ICL4_contacts.pb, 40 bonds  

> select :389-673

1737 atoms, 1766 bonds, 1 pseudobond, 221 residues, 2 models selected  

> transparency sel 0 target c

> select clear

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_NBD1.cxs"

> save "E:/Dropbox/PhD/Research/4 Manuscripts/CFTR Domain
> Assembly/Data/Structural/5uak/20220302_5uak_ICL1_NBD1.tif" width 701 height
> 572 supersample 3


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 27.20.100.8853
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Manufacturer: LG Electronics
Model: 16ZD90P-GX7TK
OS: Microsoft Windows 10 Home (Build 19043)
Memory: 16,890,650,624
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i7-1165G7 @ 2.80GHz
OSLanguage: ko-KR
Locale: ('ko_KR', 'cp949')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by pett, 4 years ago

Component: Unassigned → Graphics
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash in context.makeCurrent()

Possibly while saving image

comment:2 by Tom Goddard, 4 years ago

Resolution: → can't reproduce
Status: assigned → closed
Summary: Crash in context.makeCurrent() → Crash in QOpenGLContext.makeCurrent()

Crashed in making the opengl context current during a window resize event. Error was an access violation. So this was not likely Qt aborting because the call was in the wrong thread. Still the crash was in Qt in QOpenGLContext.makeCurrent(w).

Current thread 0x00001350 (most recent call first):

File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 111 in make_current
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 490 in make_current
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 104 in _use_opengl
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\view.py", line 139 in draw
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 73 in draw_new_frame
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\updateloop.py", line 158 in update_graphics_now
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\graphics.py", line 145 in resizeEvent
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\graphics.py", line 57 in event
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main

Note: See TracTickets for help on using tickets.