![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#6103 closed defect (nonchimerax)
Graphics driver crash, macOS 10.14.6, Intel UHD Graphics 617
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 1.1rc202008282111 (2020-08-28 21:11:00 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [9534]
Path: /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.1.0 (1.1.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [9534]
User ID: 501
Date/Time: 2022-02-07 13:56:23.531 -0500
OS Version: Mac OS X 10.14.6 (18G3020)
Report Version: 12
Bridge OS Version: 5.2 (18P4347)
Anonymous UUID: 6C42415F-55E4-EA85-D679-56DC2462B87D
Sleep/Wake UUID: 85F87072-120E-42EA-B840-A0005E77A1BF
Time Awake Since Boot: 170000 seconds
Time Since Wake: 13000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5a1792c2 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5a234bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff5a096d8a raise + 26
3 libsystem_platform.dylib 0x00007fff5a229b5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff5a0e36a6 abort + 127
6 libGPUSupportMercury.dylib 0x00007fff49128240 gpusGenerateCrashLog + 166
7 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff27409578 gpusKillClientExt + 9
8 libGPUSupportMercury.dylib 0x00007fff49129730 gpusSubmitDataBuffers + 490
9 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff26862ea8 IntelCommandBuffer::getNew(GLDContextRec*) + 48
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff26862cba intelSubmitCommands + 171
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff269b36d6 gldPresentFramebufferData + 120
12 GLEngine 0x00007fff37d38611 glSwap_Exec + 97
13 com.apple.opengl 0x00007fff37d1a74f CGLFlushDrawable + 59
14 com.apple.AppKit 0x00007fff2ba66968 -[NSOpenGLContext flushBuffer] + 27
15 libqcocoa.dylib 0x0000000117986d3d 0x117930000 + 355645
16 QtGui 0x000000010d85fa6c QOpenGLContext::swapBuffers(QSurface*) + 412
17 QtGui.so 0x000000010e42359f meth_QOpenGLContext_swapBuffers(_object*, _object*) + 95
18 org.python.python 0x0000000103a01392 _PyMethodDef_RawFastCallKeywords + 226
19 org.python.python 0x0000000103a008c9 _PyCFunction_FastCallKeywords + 41
20 org.python.python 0x0000000103ad5b60 call_function + 656
21 org.python.python 0x0000000103ad2817 _PyEval_EvalFrameDefault + 26567
22 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
23 org.python.python 0x0000000103a00889 _PyFunction_FastCallKeywords + 217
24 org.python.python 0x0000000103ad5bd4 call_function + 772
25 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
26 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
27 org.python.python 0x0000000103ad5bd4 call_function + 772
28 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
29 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
30 org.python.python 0x0000000103a00889 _PyFunction_FastCallKeywords + 217
31 org.python.python 0x0000000103ad5bd4 call_function + 772
32 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
33 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
34 org.python.python 0x0000000103ad5bd4 call_function + 772
35 org.python.python 0x0000000103ad2817 _PyEval_EvalFrameDefault + 26567
36 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
37 org.python.python 0x0000000103a00889 _PyFunction_FastCallKeywords + 217
38 org.python.python 0x0000000103ad5bd4 call_function + 772
39 org.python.python 0x0000000103ad2817 _PyEval_EvalFrameDefault + 26567
40 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
41 org.python.python 0x0000000103ad5bd4 call_function + 772
42 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
43 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
44 org.python.python 0x0000000103ad5bd4 call_function + 772
45 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
46 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
47 org.python.python 0x0000000103ad5bd4 call_function + 772
48 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
49 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
50 org.python.python 0x0000000103a00889 _PyFunction_FastCallKeywords + 217
51 org.python.python 0x0000000103ad5bd4 call_function + 772
52 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
53 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
54 org.python.python 0x0000000103ad5bd4 call_function + 772
55 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
56 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
57 org.python.python 0x0000000103ad5bd4 call_function + 772
58 org.python.python 0x0000000103ad27fa _PyEval_EvalFrameDefault + 26538
59 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
60 org.python.python 0x0000000103a01883 _PyObject_Call_Prepend + 131
61 org.python.python 0x0000000103a009e8 PyObject_Call + 136
62 sip.so 0x000000010c77cf7a call_method + 76
63 sip.so 0x000000010c778d07 sip_api_call_procedure_method + 152
64 QtGui.so 0x000000010e37a657 sipQWindow::resizeEvent(QResizeEvent*) + 103
65 QtGui 0x000000010d8280e2 QWindow::event(QEvent*) + 562
66 QtGui.so 0x000000010e3ffb1b meth_QWindow_event(_object*, _object*) + 139
67 org.python.python 0x0000000103a01392 _PyMethodDef_RawFastCallKeywords + 226
68 org.python.python 0x0000000103a008c9 _PyCFunction_FastCallKeywords + 41
69 org.python.python 0x0000000103ad5b60 call_function + 656
70 org.python.python 0x0000000103ad2817 _PyEval_EvalFrameDefault + 26567
71 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
72 org.python.python 0x0000000103a01883 _PyObject_Call_Prepend + 131
73 org.python.python 0x0000000103a009e8 PyObject_Call + 136
74 sip.so 0x000000010c77cf7a call_method + 76
75 sip.so 0x000000010c778c40 sip_api_call_method + 136
76 QtGui.so 0x000000010e37ac7b sipQWindow::event(QEvent*) + 123
77 QtWidgets 0x000000010d24367d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
78 QtWidgets 0x000000010d244a82 QApplication::notify(QObject*, QEvent*) + 594
79 QtWidgets.so 0x000000010ce033ca sipQApplication::notify(QObject*, QEvent*) + 234
80 QtCore 0x000000010df2f324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
81 QtGui 0x000000010d81af13 QGuiApplicationPrivate::processGeometryChangeEvent(QWindowSystemInterfacePrivate::GeometryChangeEvent*) + 371
82 QtGui 0x000000010d7ff50b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 379
83 QtGui 0x000000010d7fa355 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 581
84 libqcocoa.dylib 0x000000011794b7d0 0x117930000 + 112592
85 QtCore 0x000000010df396bf QMetaMethod::invoke(QObject*, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) const + 1295
86 libqcocoa.dylib 0x00000001179521d0 0x117930000 + 139728
87 com.apple.Foundation 0x00007fff30354188 -[__NSObserver _doit:] + 299
88 com.apple.CoreFoundation 0x00007fff2e118346 __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
89 com.apple.CoreFoundation 0x00007fff2e1182c0 ___CFXRegistrationPost_block_invoke + 63
90 com.apple.CoreFoundation 0x00007fff2e11822a _CFXRegistrationPost + 404
91 com.apple.CoreFoundation 0x00007fff2e1206d8 ___CFXNotificationPost_block_invoke + 87
92 com.apple.CoreFoundation 0x00007fff2e089064 -[_CFXNotificationRegistrar find:object:observer:enumerator:] + 1642
93 com.apple.CoreFoundation 0x00007fff2e088417 _CFXNotificationPost + 732
94 com.apple.AppKit 0x00007fff2b7364b5 -[NSView _postFrameChangeNotification] + 313
95 com.apple.AppKit 0x00007fff2b72f781 -[NSView setFrameSize:] + 2168
96 com.apple.AppKit 0x00007fff2b78902c -[NSWindow _oldPlaceWindow:] + 985
97 com.apple.AppKit 0x00007fff2b78841f -[NSWindow _setFrameCommon:display:stashSize:] + 2814
98 com.apple.AppKit 0x00007fff2b78790e -[NSWindow _setFrame:display:allowImplicitAnimation:stashSize:] + 192
99 com.apple.AppKit 0x00007fff2b787847 -[NSWindow setFrame:display:] + 51
100 com.apple.AppKit 0x00007fff2c16c1e5 -[NSWindow(NSWindowResizing) _resizeSetFrame:withEvent:] + 107
101 com.apple.AppKit 0x00007fff2baaf6a0 -[NSWindow(NSWindowResizing) _resizeWithEvent:] + 2736
102 com.apple.AppKit 0x00007fff2bf405f9 -[NSTitledFrame attemptResizeWithEvent:] + 177
103 com.apple.AppKit 0x00007fff2b9ff275 -[NSThemeFrame handleMouseDown:] + 297
104 com.apple.AppKit 0x00007fff2b9ff467 -[NSThemeFrame mouseDown:] + 30
105 com.apple.AppKit 0x00007fff2b8df937 -[NSWindow(NSEventRouting) _handleMouseDownEvent:isDelayedEvent:] + 5724
106 com.apple.AppKit 0x00007fff2b8161a6 -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 2295
107 com.apple.AppKit 0x00007fff2b815667 -[NSWindow(NSEventRouting) sendEvent:] + 478
108 libqcocoa.dylib 0x0000000117962685 0x117930000 + 206469
109 com.apple.AppKit 0x00007fff2b6b4e4b -[NSApplication(NSEvent) sendEvent:] + 331
110 libqcocoa.dylib 0x000000011796970a 0x117930000 + 235274
111 com.apple.AppKit 0x00007fff2b6a35c0 -[NSApplication run] + 755
112 libqcocoa.dylib 0x0000000117965de3 0x117930000 + 220643
113 QtCore 0x000000010df2a93f QEventLoop::exec(QFlags) + 431
114 QtCore 0x000000010df2f932 QCoreApplication::exec() + 130
115 QtWidgets.so 0x000000010cef27d2 meth_QApplication_exec_(_object*, _object*) + 82
116 org.python.python 0x0000000103a01392 _PyMethodDef_RawFastCallKeywords + 226
117 org.python.python 0x0000000103a008c9 _PyCFunction_FastCallKeywords + 41
118 org.python.python 0x0000000103ad5b60 call_function + 656
119 org.python.python 0x0000000103ad2817 _PyEval_EvalFrameDefault + 26567
120 org.python.python 0x0000000103a00d71 function_code_fastcall + 177
121 org.python.python 0x0000000103ad5bd4 call_function + 772
122 org.python.python 0x0000000103ad2817 _PyEval_EvalFrameDefault + 26567
123 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
124 org.python.python 0x0000000103a00889 _PyFunction_FastCallKeywords + 217
125 org.python.python 0x0000000103ad5bd4 call_function + 772
126 org.python.python 0x0000000103ad28ae _PyEval_EvalFrameDefault + 26718
127 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
128 org.python.python 0x0000000103acbfb0 PyEval_EvalCode + 48
129 org.python.python 0x0000000103ac9547 builtin_exec + 583
130 org.python.python 0x0000000103a0153d _PyMethodDef_RawFastCallKeywords + 653
131 org.python.python 0x0000000103a008c9 _PyCFunction_FastCallKeywords + 41
132 org.python.python 0x0000000103ad5b60 call_function + 656
133 org.python.python 0x0000000103ad28ae _PyEval_EvalFrameDefault + 26718
134 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
135 org.python.python 0x0000000103a00889 _PyFunction_FastCallKeywords + 217
136 org.python.python 0x0000000103ad5bd4 call_function + 772
137 org.python.python 0x0000000103ad28ae _PyEval_EvalFrameDefault + 26718
138 org.python.python 0x0000000103ad6a2c _PyEval_EvalCodeWithName + 3276
139 org.python.python 0x0000000103a00387 _PyFunction_FastCallDict + 455
140 org.python.python 0x0000000103b30af3 pymain_run_module + 147
141 org.python.python 0x0000000103b2fbdc pymain_main + 5900
142 org.python.python 0x0000000103b2e4c3 Py_Main + 51
143 edu.ucsf.cgl.ChimeraX 0x00000001039d2dc8 main + 120
144 libdyld.dylib 0x00007fff5a03e3d5 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5a176866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a23556e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x0000000105511c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 2:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2e0b599e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff2e0b4f0c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff2e0b466e CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff2b6b24a2 _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 3:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f422f 0x10e752000 + 35267119
4 QtWebEngineCore 0x00000001108a805d 0x10e752000 + 34955357
5 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
6 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 4:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5a17978a kevent + 10
1 QtWebEngineCore 0x0000000110bb59a9 0x10e752000 + 38156713
2 QtWebEngineCore 0x0000000110bb2cbd 0x10e752000 + 38145213
3 QtWebEngineCore 0x0000000110969cdc 0x10e752000 + 35749084
4 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
5 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
6 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 5:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff5a17978a kevent + 10
1 QtWebEngineCore 0x0000000110bb59a9 0x10e752000 + 38156713
2 QtWebEngineCore 0x0000000110bb2cbd 0x10e752000 + 38145213
3 QtWebEngineCore 0x0000000110969cc4 0x10e752000 + 35749060
4 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
5 QtWebEngineCore 0x0000000110912a74 0x10e752000 + 35392116
6 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 6:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f4421 0x10e752000 + 35267617
4 QtWebEngineCore 0x000000011090bd28 0x10e752000 + 35364136
5 QtWebEngineCore 0x000000011090c65b 0x10e752000 + 35366491
6 QtWebEngineCore 0x000000011090c2c4 0x10e752000 + 35365572
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 7:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f4421 0x10e752000 + 35267617
4 QtWebEngineCore 0x000000011090bd28 0x10e752000 + 35364136
5 QtWebEngineCore 0x000000011090c65b 0x10e752000 + 35366491
6 QtWebEngineCore 0x000000011090c234 0x10e752000 + 35365428
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 8:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f4421 0x10e752000 + 35267617
4 QtWebEngineCore 0x000000011090bd28 0x10e752000 + 35364136
5 QtWebEngineCore 0x000000011090c65b 0x10e752000 + 35366491
6 QtWebEngineCore 0x000000011090c234 0x10e752000 + 35365428
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5a17978a kevent + 10
1 QtWebEngineCore 0x0000000110bb59a9 0x10e752000 + 38156713
2 QtWebEngineCore 0x0000000110bb2cbd 0x10e752000 + 38145213
3 QtWebEngineCore 0x0000000110969cc4 0x10e752000 + 35749060
4 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
5 QtWebEngineCore 0x000000011023ffe4 0x10e752000 + 28237796
6 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 10:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f422f 0x10e752000 + 35267119
4 QtWebEngineCore 0x000000011090bd1a 0x10e752000 + 35364122
5 QtWebEngineCore 0x000000011090c3bf 0x10e752000 + 35365823
6 QtWebEngineCore 0x000000011090c264 0x10e752000 + 35365476
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 11:: CompositorTileWorker1/76547
0 libsystem_kernel.dylib 0x00007fff5a176866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a23556e _pthread_cond_wait + 722
2 QtWebEngineCore 0x0000000110961fa8 0x10e752000 + 35717032
3 QtWebEngineCore 0x00000001118e84c8 0x10e752000 + 51995848
4 QtWebEngineCore 0x0000000110922694 0x10e752000 + 35456660
5 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
6 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 12:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f422f 0x10e752000 + 35267119
4 QtWebEngineCore 0x00000001108a805d 0x10e752000 + 34955357
5 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
6 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f422f 0x10e752000 + 35267119
4 QtWebEngineCore 0x00000001108a805d 0x10e752000 + 34955357
5 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
6 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108a8052 0x10e752000 + 34955346
4 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
5 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
6 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5a17978a kevent + 10
1 QtWebEngineCore 0x0000000110bb59a9 0x10e752000 + 38156713
2 QtWebEngineCore 0x0000000110bb2cbd 0x10e752000 + 38145213
3 QtWebEngineCore 0x0000000110969cdc 0x10e752000 + 35749084
4 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
5 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
6 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
7 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 16:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f422f 0x10e752000 + 35267119
4 QtWebEngineCore 0x000000011090bd1a 0x10e752000 + 35364122
5 QtWebEngineCore 0x000000011090c65b 0x10e752000 + 35366491
6 QtWebEngineCore 0x000000011090c324 0x10e752000 + 35365668
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 17:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f422f 0x10e752000 + 35267119
4 QtWebEngineCore 0x00000001108a805d 0x10e752000 + 34955357
5 QtWebEngineCore 0x00000001108d1085 0x10e752000 + 35123333
6 QtWebEngineCore 0x00000001109239bc 0x10e752000 + 35461564
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 18:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5a176866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a23556e _pthread_cond_wait + 722
2 QtCore 0x000000010dd6f8ab 0x10dd45000 + 174251
3 QtCore 0x000000010dd6f80c QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000010d46e762 0x10d233000 + 2340706
5 QtCore 0x000000010dd670b3 0x10dd45000 + 139443
6 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 19:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f4421 0x10e752000 + 35267617
4 QtWebEngineCore 0x000000011090bd28 0x10e752000 + 35364136
5 QtWebEngineCore 0x000000011090c65b 0x10e752000 + 35366491
6 QtWebEngineCore 0x000000011090c2c4 0x10e752000 + 35365572
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 20:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5a176866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a23556e _pthread_cond_wait + 722
2 QtCore 0x000000010dd6f8ab 0x10dd45000 + 174251
3 QtCore 0x000000010dd6f80c QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000010d46e762 0x10d233000 + 2340706
5 QtCore 0x000000010dd670b3 0x10dd45000 + 139443
6 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 21:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5a176866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5a23556e _pthread_cond_wait + 722
2 QtCore 0x000000010dd6f8ab 0x10dd45000 + 174251
3 QtCore 0x000000010dd6f80c QWaitCondition::wait(QMutex*, QDeadlineTimer) + 108
4 QtWidgets 0x000000010d46e762 0x10d233000 + 2340706
5 QtCore 0x000000010dd670b3 0x10dd45000 + 139443
6 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 22:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5a17321a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5a173768 mach_msg + 60
2 QtWebEngineCore 0x00000001108f432d 0x10e752000 + 35267373
3 QtWebEngineCore 0x00000001108f4421 0x10e752000 + 35267617
4 QtWebEngineCore 0x000000011090bd28 0x10e752000 + 35364136
5 QtWebEngineCore 0x000000011090c65b 0x10e752000 + 35366491
6 QtWebEngineCore 0x000000011090c2c4 0x10e752000 + 35365572
7 QtWebEngineCore 0x0000000110963717 0x10e752000 + 35723031
8 libsystem_pthread.dylib 0x00007fff5a2322eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff5a235249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff5a23140d thread_start + 13
Thread 23:
0 libsystem_pthread.dylib 0x00007fff5a2313f0 start_wqthread + 0
Thread 24:
0 libsystem_pthread.dylib 0x00007fff5a2313f0 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff5a2313f0 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010cc975c0 rcx: 0x0000000103e83a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x0000000103e83a80 rsp: 0x0000000103e83a48
r8: 0x0000000103e83f48 r9: 0x1eda7410d5392901 r10: 0x000000010cc9766c r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x000000011962e518 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff5a1792c2 rfl: 0x0000000000000206 cr2: 0x00007fff892ae8b0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x1039dd000 - 0x103bd8fff +org.python.python (3.7.8, [c] 2001-2019 Python Software Foundation. - 3.7.8) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python
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0x104292000 - 0x104459b43 +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/lib/libcrypto.1.1.dylib
0x1044f2000 - 0x1044f7ff3 +_blake2.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_blake2.cpython-37m-darwin.so
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0x10451c000 - 0x10451cffb +_bisect.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_bisect.cpython-37m-darwin.so
0x104524000 - 0x104525ffb +_random.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_random.cpython-37m-darwin.so
0x104636000 - 0x10463cffb +_json.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_json.cpython-37m-darwin.so
0x104685000 - 0x104692fff +_ssl.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_ssl.cpython-37m-darwin.so
0x1046a8000 - 0x1046b1ffb +_socket.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_socket.cpython-37m-darwin.so
0x104703000 - 0x104706fff +select.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/select.cpython-37m-darwin.so
0x104711000 - 0x104715ffb +_struct.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_struct.cpython-37m-darwin.so
0x104723000 - 0x104727ff7 +binascii.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/binascii.cpython-37m-darwin.so
0x104830000 - 0x10483eff3 +_datetime.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_datetime.cpython-37m-darwin.so
0x10488e000 - 0x10488eff3 +_scproxy.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_scproxy.cpython-37m-darwin.so
0x104896000 - 0x1048d4ff7 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
0x104939000 - 0x104966ff3 +pyexpat.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/pyexpat.cpython-37m-darwin.so
0x10497e000 - 0x10497fff3 +_queue.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_queue.cpython-37m-darwin.so
0x104a09000 - 0x104a0afff +lapack_lite.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/lapack_lite.cpython-37m-darwin.so
0x104a55000 - 0x104a56fff +_posixsubprocess.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_posixsubprocess.cpython-37m-darwin.so
0x104b2f000 - 0x104b41fff +_pickle.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_pickle.cpython-37m-darwin.so
0x104bc4000 - 0x104bc7ffb +_csv.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_csv.cpython-37m-darwin.so
0x104d52000 - 0x1050b5fe7 +_multiarray_umath.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_umath.cpython-37m-darwin.so
0x1051db000 - 0x108c46ae7 +libopenblasp-r0.3.7.dylib (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libopenblasp-r0.3.7.dylib
0x108f50000 - 0x109067ff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x1090d5000 - 0x10910bfff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10911f000 - 0x109134ff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/lib/python3.7/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x10b2d6000 - 0x10b2e3ff3 +_multiarray_tests.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/core/_multiarray_tests.cpython-37m-darwin.so
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0x10b3a1000 - 0x10b3baffb +_umath_linalg.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so
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0x10b528000 - 0x10b593ffb +mtrand.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/mtrand.cpython-37m-darwin.so
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0x10b731000 - 0x10b73bfff +_pcg64.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_pcg64.cpython-37m-darwin.so
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0x10b761000 - 0x10b7e3fff +_generator.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/random/_generator.cpython-37m-darwin.so
0x10b943000 - 0x10b944ff7 +_appdirs.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_appdirs.so
0x10b94c000 - 0x10b94dffb +libappdirs.dylib (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/lib/libappdirs.dylib
0x10b955000 - 0x10b976ffb +_serialize.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1-rc-2020.08.28.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/chimerax/core/_serialize.cpython-37m-darwin.so
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0x7fff54480000 - 0x7fff54488ffb com.apple.SymptomDiagnosticReporter (1.0 - 820.267.1) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter
0x7fff546c7000 - 0x7fff546f1ffb com.apple.framework.SystemAdministration (1.0 - 1.0) /System/Library/PrivateFrameworks/SystemAdministration.framework/Versions/A/SystemAdministration
0x7fff54956000 - 0x7fff54962fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff54967000 - 0x7fff54973ffb com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff54bd9000 - 0x7fff54ca1ff3 com.apple.TextureIO (3.8.4 - 3.8.1) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
0x7fff54cfe000 - 0x7fff54d19fff com.apple.ToneKit (1.0 - 1) /System/Library/PrivateFrameworks/ToneKit.framework/Versions/A/ToneKit
0x7fff54d1a000 - 0x7fff54d3fff7 com.apple.ToneLibrary (1.0 - 1) /System/Library/PrivateFrameworks/ToneLibrary.framework/Versions/A/ToneLibrary
0x7fff54d57000 - 0x7fff54d58fff com.apple.TrustEvaluationAgent (2.0 - 31.200.1) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff54d5e000 - 0x7fff54f16ffb com.apple.UIFoundation (1.0 - 551.5) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff55b92000 - 0x7fff55c6bfff com.apple.ViewBridge (401.1 - 401.1) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge
0x7fff56443000 - 0x7fff56446fff com.apple.dt.XCTTargetBootstrap (1.0 - 14490.66) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap
0x7fff56847000 - 0x7fff56849ffb com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff5684a000 - 0x7fff5685ffff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff56896000 - 0x7fff568c7ffb com.apple.contacts.vCard (1.0 - ???) /System/Library/PrivateFrameworks/vCard.framework/Versions/A/vCard
0x7fff56b13000 - 0x7fff56b47fff libCRFSuite.dylib (41.15.4) /usr/lib/libCRFSuite.dylib
0x7fff56b4a000 - 0x7fff56b54ff7 libChineseTokenizer.dylib (28.15.3) /usr/lib/libChineseTokenizer.dylib
0x7fff56b55000 - 0x7fff56bdefff libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib
0x7fff56be2000 - 0x7fff56be3ffb libDiagnosticMessagesClient.dylib (107) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff56c1a000 - 0x7fff56e71ff3 libFosl_dynamic.dylib (18.3.4) /usr/lib/libFosl_dynamic.dylib
0x7fff56e91000 - 0x7fff56e98fff libMatch.1.dylib (31.200.1) /usr/lib/libMatch.1.dylib
0x7fff56ec2000 - 0x7fff56ee1fff libMobileGestalt.dylib (645.270.1) /usr/lib/libMobileGestalt.dylib
0x7fff56ee2000 - 0x7fff56ee2fff libOpenScriptingUtil.dylib (179.1) /usr/lib/libOpenScriptingUtil.dylib
0x7fff57022000 - 0x7fff57023ffb libSystem.B.dylib (1252.250.1) /usr/lib/libSystem.B.dylib
0x7fff5709f000 - 0x7fff570a0fff libThaiTokenizer.dylib (2.15.1) /usr/lib/libThaiTokenizer.dylib
0x7fff570b2000 - 0x7fff570c8ffb libapple_nghttp2.dylib (1.24.1) /usr/lib/libapple_nghttp2.dylib
0x7fff570c9000 - 0x7fff570f2ffb libarchive.2.dylib (54.250.1) /usr/lib/libarchive.2.dylib
0x7fff570f3000 - 0x7fff57172fff libate.dylib (1.13.8) /usr/lib/libate.dylib
0x7fff57176000 - 0x7fff57176ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff57248000 - 0x7fff57258ffb libbsm.0.dylib (39.200.18) /usr/lib/libbsm.0.dylib
0x7fff57259000 - 0x7fff57266fff libbz2.1.0.dylib (38.200.3) /usr/lib/libbz2.1.0.dylib
0x7fff57267000 - 0x7fff572baff7 libc++.1.dylib (400.9.4) /usr/lib/libc++.1.dylib
0x7fff572bb000 - 0x7fff572d0ff7 libc++abi.dylib (400.17) /usr/lib/libc++abi.dylib
0x7fff572d1000 - 0x7fff572d1ff3 libcharset.1.dylib (51.200.6) /usr/lib/libcharset.1.dylib
0x7fff572d2000 - 0x7fff572e2ffb libcmph.dylib (6.15.1) /usr/lib/libcmph.dylib
0x7fff572e3000 - 0x7fff572fbffb libcompression.dylib (52.250.2) /usr/lib/libcompression.dylib
0x7fff57570000 - 0x7fff57586fff libcoretls.dylib (155.220.1) /usr/lib/libcoretls.dylib
0x7fff57587000 - 0x7fff57588ff3 libcoretls_cfhelpers.dylib (155.220.1) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff57726000 - 0x7fff5781eff7 libcrypto.35.dylib (22.260.1) /usr/lib/libcrypto.35.dylib
0x7fff57920000 - 0x7fff57a20fcb libcrypto.42.dylib (22.260.1) /usr/lib/libcrypto.42.dylib
0x7fff57a21000 - 0x7fff57a2cff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib
0x7fff57a34000 - 0x7fff57a8aff3 libcups.2.dylib (462.14) /usr/lib/libcups.2.dylib
0x7fff57ab3000 - 0x7fff57b06fff libcurl.4.dylib (105.200.2) /usr/lib/libcurl.4.dylib
0x7fff57bbe000 - 0x7fff57bbefff libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib
0x7fff57bbf000 - 0x7fff57bd8ffb libexpat.1.dylib (16.1.2) /usr/lib/libexpat.1.dylib
0x7fff57bf0000 - 0x7fff57bf5ff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib
0x7fff57bf6000 - 0x7fff57bfbff7 libheimdal-asn1.dylib (520.270.1) /usr/lib/libheimdal-asn1.dylib
0x7fff57c26000 - 0x7fff57d16fff libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib
0x7fff57d17000 - 0x7fff57f78ffb libicucore.A.dylib (62141.0.1) /usr/lib/libicucore.A.dylib
0x7fff57fc5000 - 0x7fff57fc6fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib
0x7fff57fc7000 - 0x7fff57fdfff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff57ff7000 - 0x7fff5809bff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib
0x7fff5809c000 - 0x7fff582a0fff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib
0x7fff58478000 - 0x7fff587c9ff7 libnetwork.dylib (1229.250.15) /usr/lib/libnetwork.dylib
0x7fff5885b000 - 0x7fff58fe0fdf libobjc.A.dylib (756.2) /usr/lib/libobjc.A.dylib
0x7fff58fe1000 - 0x7fff58fe2fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib
0x7fff58ff2000 - 0x7fff58ff6ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib
0x7fff58ff9000 - 0x7fff5902efff libpcap.A.dylib (79.250.3) /usr/lib/libpcap.A.dylib
0x7fff59147000 - 0x7fff5915fffb libresolv.9.dylib (65.200.3) /usr/lib/libresolv.9.dylib
0x7fff59161000 - 0x7fff5919cff3 libsandbox.1.dylib (851.270.1) /usr/lib/libsandbox.1.dylib
0x7fff5919d000 - 0x7fff591afff7 libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib
0x7fff591b0000 - 0x7fff591b1ff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib
0x7fff591b2000 - 0x7fff5938ffff libsqlite3.dylib (274.26) /usr/lib/libsqlite3.dylib
0x7fff59453000 - 0x7fff59482fff libssl.44.dylib (22.260.1) /usr/lib/libssl.44.dylib
0x7fff595a8000 - 0x7fff595abff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff595ac000 - 0x7fff595b9fff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff595be000 - 0x7fff596a1ffb libxml2.2.dylib (32.14) /usr/lib/libxml2.2.dylib
0x7fff596a2000 - 0x7fff596caff3 libxslt.1.dylib (16.7) /usr/lib/libxslt.1.dylib
0x7fff596cb000 - 0x7fff596ddff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff59ec1000 - 0x7fff59ec5ff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff59ec6000 - 0x7fff59ed0ff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib
0x7fff59ed1000 - 0x7fff59ed8ff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff59ed9000 - 0x7fff59ee2ff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib
0x7fff59ee3000 - 0x7fff59f67fc3 libcorecrypto.dylib (602.260.2) /usr/lib/system/libcorecrypto.dylib
0x7fff59fee000 - 0x7fff5a027ff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib
0x7fff5a028000 - 0x7fff5a054ff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib
0x7fff5a055000 - 0x7fff5a055ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff5a056000 - 0x7fff5a062ff3 libkxld.dylib (4903.278.25) /usr/lib/system/libkxld.dylib
0x7fff5a063000 - 0x7fff5a063ff7 liblaunch.dylib (1336.261.4) /usr/lib/system/liblaunch.dylib
0x7fff5a064000 - 0x7fff5a069fff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib
0x7fff5a06a000 - 0x7fff5a06cff7 libquarantine.dylib (86.270.1) /usr/lib/system/libquarantine.dylib
0x7fff5a06d000 - 0x7fff5a06eff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff5a06f000 - 0x7fff5a086ff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff5a087000 - 0x7fff5a087ff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff5a088000 - 0x7fff5a10ffff libsystem_c.dylib (1272.250.1) /usr/lib/system/libsystem_c.dylib
0x7fff5a110000 - 0x7fff5a113ffb libsystem_configuration.dylib (963.270.3) /usr/lib/system/libsystem_configuration.dylib
0x7fff5a114000 - 0x7fff5a117ff7 libsystem_coreservices.dylib (66) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5a118000 - 0x7fff5a11efff libsystem_darwin.dylib (1272.250.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff5a11f000 - 0x7fff5a125ffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5a126000 - 0x7fff5a171ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff5a172000 - 0x7fff5a19aff7 libsystem_kernel.dylib (4903.278.25) /usr/lib/system/libsystem_kernel.dylib
0x7fff5a19b000 - 0x7fff5a1e6ff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff5a1e7000 - 0x7fff5a211fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff5a212000 - 0x7fff5a21cff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5a21d000 - 0x7fff5a224fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff5a225000 - 0x7fff5a22efef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib
0x7fff5a22f000 - 0x7fff5a239ff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff5a23a000 - 0x7fff5a23dff7 libsystem_sandbox.dylib (851.270.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5a23e000 - 0x7fff5a240ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff5a241000 - 0x7fff5a248ff3 libsystem_symptoms.dylib (820.267.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5a249000 - 0x7fff5a25eff7 libsystem_trace.dylib (906.260.2) /usr/lib/system/libsystem_trace.dylib
0x7fff5a260000 - 0x7fff5a265ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff5a266000 - 0x7fff5a295fff libxpc.dylib (1336.261.4) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 20
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 122756
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=740.8M resident=0K(0%) swapped_out_or_unallocated=740.8M(100%)
Writable regions: Total=2.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 2084K 59
CoreAnimation 11.1M 109
CoreGraphics 8K 1
CoreImage 268K 40
CoreUI image data 5004K 58
CoreUI image file 360K 6
Foundation 20K 2
Kernel Alloc Once 8K 1
MALLOC 1.6G 1310
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
Memory Tag 251 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 100K 25
Stack 148.2M 26
Stack Guard 56.0M 1
VM_ALLOCATE 415.2M 521
__DATA 50.8M 524
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 247.1M 147
__TEXT 493.7M 498
__UNICODE 564K 1
mapped file 200.4M 135
shared memory 2752K 17
=========== ======= =======
TOTAL 3.2G 3506
TOTAL, minus reserved VM space 3.2G 3506
System Profile:
Network Service: Wi-Fi, AirPort, en0
bridge_os_version: Bridge OS 5.2 (18P4347)
Boot Volume File System Type: apfs
bridge_model: iBridge2,8
Memory Module: BANK 0/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x80AD, 0x483943434E4E4E4641474D4C4C522D4E5644
Memory Module: BANK 1/DIMM0, 8 GB, LPDDR3, 2133 MHz, 0x80AD, 0x483943434E4E4E4641474D4C4C522D4E5644
USB Device: USB 3.0 Bus
USB Device: USB Laser Mouse
USB Device: iBridge Bus
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Air, Apple Inc., 41.2
Model: MacBookAir8,1, BootROM 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0), 2 processors, Intel Core i5, 1.6 GHz, 16 GB, SMC
Graphics: kHW_IntelUHDGraphics617Item, Intel UHD Graphics 617, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x843), wl0: Oct 23 2019 07:58:16 version 9.137.11.0.32.6.35 FWID 01-3906e949
Bluetooth: Version 6.0.14d4, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.1rc202008282111 (2020-08-28)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5 files/fig 5 02.cxs"
Log from Mon Feb 7 15:20:51 2022UCSF ChimeraX version: 1.1rc202008282111
(2020-08-28)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/A10_3dimers_02-coot-0.pdb"
Chain information for A10_3dimers_02-coot-0.pdb #1
---
Chain | Description
A C D | No description available
B E F | No description available
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/A11_3dimers_02-coot-1.pdb"
Chain information for A11_3dimers_02-coot-1.pdb #2
---
Chain | Description
A C D | No description available
B E F | No description available
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/A12_3dimers_02-coot-0.pdb"
Chain information for A12_3dimers_02-coot-0.pdb #3
---
Chain | Description
A C D | No description available
B E F | No description available
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/B1_3dimers_02-coot-28.pdb"
Summary of feedback from opening /Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
MS/fig 5 files/corbin_pdb/B1_3dimers_02-coot-28.pdb
---
warnings | Cannot find LINK/SSBOND residue LEU (273 )
Cannot find LINK/SSBOND residue LEU (273 )
Chain information for B1_3dimers_02-coot-28.pdb #4
---
Chain | Description
A G H | No description available
B J K | No description available
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/B2_3dimers_02-coot-8.pdb"
Chain information for B2_3dimers_02-coot-8.pdb #5
---
Chain | Description
A C D | No description available
B E F | No description available
Drag select of 102510 atoms, 960 bonds
> hide sel atoms
> show sel cartoons
> select clear
> ui tool show "Color Actions"
> set bgColor white
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
> MS/k40r_mec17_48nm_A10A12_B1B2.mrc"
Opened k40r_mec17_48nm_A10A12_B1B2.mrc, grid size 402,402,402, pixel 1.74,
shown at level 0.00735, step 2, values float32
> transparency 50
> ui mousemode right zoom
> ui tool show "Side View"
> volume #6 level 0.01473
> select #2
20502 atoms, 20952 bonds, 2616 residues, 1 model selected
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> fitmap #2 inMap #6
Fit molecule A11_3dimers_02-coot-1.pdb (#2) to map
k40r_mec17_48nm_A10A12_B1B2.mrc (#6) using 20502 atoms
average map value = 0.03785, steps = 52
shifted from previous position = 1.07
rotated from previous position = 0.383 degrees
atoms outside contour = 5844, contour level = 0.014735
Position of A11_3dimers_02-coot-1.pdb (#2) relative to
k40r_mec17_48nm_A10A12_B1B2.mrc (#6) coordinates:
Matrix rotation and translation
0.99998031 -0.00122962 -0.00615372 3.13310051
0.00124370 0.99999662 0.00228414 -1.53792100
0.00615089 -0.00229175 0.99997846 -85.54268214
Axis -0.34253554 -0.92108136 0.18514461
Axis point 13439.59155508 0.00000000 -396.33219243
Rotation angle (degrees) 0.38270632
Shift along axis -15.49441412
> ~select #2
Nothing selected
> select #3
20502 atoms, 20952 bonds, 2616 residues, 1 model selected
> fitmap #3 inMap #6
Fit molecule A12_3dimers_02-coot-0.pdb (#3) to map
k40r_mec17_48nm_A10A12_B1B2.mrc (#6) using 20502 atoms
average map value = 0.03723, steps = 52
shifted from previous position = 1.52
rotated from previous position = 0.469 degrees
atoms outside contour = 5667, contour level = 0.014735
Position of A12_3dimers_02-coot-0.pdb (#3) relative to
k40r_mec17_48nm_A10A12_B1B2.mrc (#6) coordinates:
Matrix rotation and translation
0.99996689 -0.00813652 -0.00012320 2.90905078
0.00813663 0.99996648 0.00091572 -3.55094097
0.00011575 -0.00091669 0.99999957 -83.84104105
Axis -0.11188415 -0.01458963 0.99361415
Axis point 583.00705733 -794.12998183 0.00000000
Rotation angle (degrees) 0.46919271
Shift along axis -83.57931449
> ~select #3
Nothing selected
> ui mousemode right select
> select clear
> ui mousemode right zoom
> hide #1 models
> hide #4 models
> hide #5 models
> ui mousemode right translate
> volume #6 level 0.01012
> show #1 models
> hide #1 models
> show #4 models
> hide #4 models
> hide #3 models
> volume #6 level 0.01889
> hide #!6 models
> show #1 models
> show #3 models
> show #4 models
> show #5 models
Drag select of 1139 residues
> select up
11193 atoms, 11401 bonds, 1441 residues, 5 models selected
> select up
16955 atoms, 17340 bonds, 2155 residues, 5 models selected
> select up
102510 atoms, 104760 bonds, 13080 residues, 5 models selected
> select down
16955 atoms, 17340 bonds, 2155 residues, 5 models selected
> select clear
Drag select of 1033 residues
> select clear
Drag select of 332 residues
Drag select of 528 residues
Drag select of 637 residues
> select up
25162 atoms, 25536 bonds, 3229 residues, 5 models selected
> select up
50865 atoms, 52020 bonds, 6465 residues, 5 models selected
> select up
102510 atoms, 104760 bonds, 13080 residues, 5 models selected
> select down
50865 atoms, 52020 bonds, 6465 residues, 5 models selected
> color sel cornflower blue
> select clear
Drag select of 827 residues
Drag select of 881 residues
Drag select of 755 residues
> select up
32119 atoms, 32612 bonds, 4145 residues, 5 models selected
> select up
51645 atoms, 52740 bonds, 6615 residues, 5 models selected
> select up
102510 atoms, 104760 bonds, 13080 residues, 5 models selected
> select down
51645 atoms, 52740 bonds, 6615 residues, 5 models selected
> color sel forest green
> select clear
> select #1
20502 atoms, 20952 bonds, 2616 residues, 1 model selected
> ~select #1
Nothing selected
> select #5
20502 atoms, 20952 bonds, 2616 residues, 1 model selected
> ~select #5
Nothing selected
> show #!6 models
> hide #!6 models
Drag select of 13035 residues
> select clear
Drag select of 13035 residues
> show #!6 models
> ui tool show "Color Actions"
> toolshed show
> ui tool show "Measure and Color Blobs"
> ui mousemode right select
> ui mousemode right select
> ui mousemode right select
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right select
> select clear
> ui tool show "Marker Placement"
> lighting simple
> lighting shadows true
> graphics silhouettes true
> lighting simple
> lighting full
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting flat
> lighting flat
> lighting simple
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting flat
> lighting flat
> lighting soft
> lighting full
> lighting soft
> lighting full
> hide #!6 models
Drag select of 13035 residues
> show #!6 models
> ui tool show "Show Volume Menu"
> ui tool show "Measure and Color Blobs"
> ui tool show "Marker Placement"
> ui mousemode right zoom
> toolshed show
> color zone #6 near #1-5 distance 2
> ui mousemode right select
> select clear
> hide #1 models
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> color zone #6 near #1-5 distance 2.5
> show #1 models
> show #2 models
> show #3 models
> show #4 models
> show #5 models
> hide #5 models
> hide #4 models
> hide #3 models
> hide #2 models
> hide #1 models
> transparency 0
> color zone #6 near #1-5 distance 3
> save "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5 files/fig 5 01.cxs"
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/fap77_j44_sharpened_map.ccp4"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/fap77_sep27_sharpened_map.ccp4"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/fap77_sept30_sharpened_map.ccp4"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/oj2_j44_sharpened_map.ccp4" "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
> MS/fig 5 files/oj2_maskb102_01_sharpened_map.ccp4"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/oj3_maska1102_sharpened_map.ccp4"
Opened fap77_j44_sharpened_map.ccp4, grid size 27,69,134, pixel
1.74,1.74,1.74, shown at level 3.43, step 1, values float32
Drag select of 6 k40r_mec17_48nm_A10A12_B1B2.mrc
> select clear
> ui mousemode right zoom
> close #7
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/FAP77_5E.pdb" "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
> MS/fig 5 files/corbin_pdb/FAP77_5F.pdb"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/FAP77_5G.pdb" "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
> MS/fig 5 files/corbin_pdb/FAP77_5H.pdb"
Chain information for FAP77_5E.pdb #7
---
Chain | Description
B | No description available
Chain information for FAP77_5F.pdb #8
---
Chain | Description
B | No description available
Chain information for FAP77_5G.pdb #9
---
Chain | Description
B | No description available
Chain information for FAP77_5H.pdb #10
---
Chain | Description
B | No description available
> select #7
1798 atoms, 1841 bonds, 217 residues, 1 model selected
> ~select #7
Nothing selected
> select #8
1798 atoms, 1841 bonds, 217 residues, 1 model selected
> cartoon style xsection barbell width 4 thickness 1.8
> ~select #8
Nothing selected
> select #7
1798 atoms, 1841 bonds, 217 residues, 1 model selected
> select #10
1798 atoms, 1841 bonds, 217 residues, 1 model selected
> close #10
> close #7
> open "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/OJ2_5A.pdb" "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
> MS/fig 5 files/corbin_pdb/OJ2_5B.pdb"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/OJ2_5C.pdb" "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
> MS/fig 5 files/corbin_pdb/OJ2_5D.pdb"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/OJ3_5I.pdb" "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs
> MS/fig 5 files/corbin_pdb/OJ3_5J.pdb"
> "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5
> files/corbin_pdb/OJ3_5K.pdb"
Chain information for OJ2_5A.pdb #7
---
Chain | Description
D | No description available
Chain information for OJ2_5B.pdb #10
---
Chain | Description
D | No description available
Chain information for OJ2_5C.pdb #11
---
Chain | Description
D | No description available
Chain information for OJ2_5D.pdb #12
---
Chain | Description
D | No description available
Chain information for OJ3_5I.pdb #13
---
Chain | Description
C | No description available
Chain information for OJ3_5J.pdb #14
---
Chain | Description
C | No description available
Chain information for OJ3_5K.pdb #15
---
Chain | Description
C | No description available
> cartoon style xsection barbell width 4 thickness 1.8
> close #7
> select #12
1313 atoms, 1352 bonds, 164 residues, 1 model selected
> ~select #12
Nothing selected
> close #12
> select #13
878 atoms, 893 bonds, 4 pseudobonds, 109 residues, 2 models selected
> select #14
878 atoms, 893 bonds, 4 pseudobonds, 109 residues, 2 models selected
> select #13/C:24
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
228 atoms, 233 bonds, 26 residues, 1 model selected
> select up
878 atoms, 893 bonds, 109 residues, 1 model selected
> select down
228 atoms, 233 bonds, 26 residues, 1 model selected
> select clear
Drag select of 33 residues
> select up
349 atoms, 356 bonds, 41 residues, 1 model selected
> select up
878 atoms, 893 bonds, 109 residues, 1 model selected
> select down
349 atoms, 356 bonds, 41 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #6
2 models selected
> select clear
> select #13/C:78
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
119 atoms, 119 bonds, 17 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #13/C:101
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
131 atoms, 134 bonds, 16 residues, 1 model selected
> select up
410 atoms, 416 bonds, 51 residues, 1 model selected
> select down
131 atoms, 134 bonds, 16 residues, 1 model selected
> select #13/C:91
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
54 atoms, 53 bonds, 7 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #13/C:98
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
131 atoms, 134 bonds, 16 residues, 1 model selected
> select up
356 atoms, 362 bonds, 44 residues, 1 model selected
> select down
131 atoms, 134 bonds, 16 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select #15
878 atoms, 893 bonds, 4 pseudobonds, 109 residues, 2 models selected
> close #15
> hide #8 models
> hide #9 models
> hide #10 models
> hide #11 models
> hide #!13 models
> hide #!14 models
> show #8 models
> show #9 models
> show #10 models
> show #11 models
> show #!13 models
> show #!14 models
> ui mousemode right translate
> save "/Users/corbin/Dropbox/Corbin_Bui_Lab/MIPs MS/fig 5 files/fig 5 02.cxs"
opened ChimeraX session
OpenGL version: 4.1 INTEL-12.10.16
OpenGL renderer: Intel(R) UHD Graphics 617
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir8,1
Processor Name: Intel Core i5
Processor Speed: 1.6 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.14.6 (18G3020)
Kernel Version: Darwin 18.7.0
Time since boot: 5 minutes
Graphics/Displays:
Intel UHD Graphics 617:
Chipset Model: Intel UHD Graphics 617
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x87c0
Revision ID: 0x0002
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1rc202008282111
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
MolecularDynamicsViewer: 1.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 4.3.3
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 4 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics driver crash, macOS 10.14.6, Intel UHD Graphics 617 |
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