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#6158 closed defect (fixed)

Open BILD file: float division by zero

Reported by:	venkatareddy@…	Owned by:	Greg Couch
Priority:	normal	Milestone:
Component:	Input/Output	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-5.13.0-28-generic-x86_64-with-glibc2.31
ChimeraX Version: 1.3rc202111230539 (2021-11-23 05:39:18 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.3rc202111230539 (2021-11-23)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 6nj9_NCP_K79NZ_ori_cen_onY.pdb

Summary of feedback from opening 6nj9_NCP_K79NZ_ori_cen_onY.pdb  
---  
warnings | Ignored bad PDB record found on line 629  
  
  
Ignored bad PDB record found on line 1474  
  
  
Ignored bad PDB record found on line 2219  
  
  
Ignored bad PDB record found on line 3038  
  
  
Ignored bad PDB record found on line 3857  
  
  
5 messages similar to the above omitted  
Duplicate atom serial number found: 2138  
  
Chain information for 6nj9_NCP_K79NZ_ori_cen_onY.pdb #1  
---  
Chain | Description  
A E | No description available  
B F | No description available  
C G | No description available  
D H | No description available  
I | No description available  
J | No description available  
  

> open MT67_rxn_ori_cen_onY.pdb

Chain information for MT67_rxn_ori_cen_onY.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> select clear

> select #2/B:412@CE

1 atom, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild

Opened BILD data containing 6 objects  

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild

Opened BILD data containing 6 objects  

> close #4

> close #3

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/XYZ-
> axes.bild

Opened BILD data containing 4 objects  

> close #3

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild

Opened BILD data containing 6 objects  

> select #1/J:98@OP1

1 atom, 1 residue, 1 model selected  

> getcrd sel

Atom #1/J:98@OP1 33.189 3.409 7.190  

> select #1/I:43@C5'

1 atom, 1 residue, 1 model selected  

> select clear

Drag select of 1 atoms  

> select clear

> select #1/J:99@OP1

1 atom, 1 residue, 1 model selected  

> getcrd sel

Atom #1/J:99@OP1 26.155 4.604 8.275  

> select #2/B:188

9 atoms, 8 bonds, 1 residue, 1 model selected  

> getcrd sel

Atom #2/B:188@N 12.643 3.639 13.872  
Atom #2/B:188@CA 12.744 4.542 15.036  
Atom #2/B:188@CB 13.831 3.960 15.938  
Atom #2/B:188@CG 14.282 4.787 17.115  
Atom #2/B:188@CD 15.432 4.081 17.803  
Atom #2/B:188@CE 15.385 4.096 19.317  
Atom #2/B:188@NZ 15.688 5.455 19.797  
Atom #2/B:188@C 12.989 5.980 14.563  
Atom #2/B:188@O 12.287 6.864 15.038  

> select clear

> hide atoms

> show cartoons

> select clear

> select #1/e:79

9 atoms, 8 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 9 atom styles  

> color sel byhetero

> select clear

> select :sam

54 atoms, 58 bonds, 2 residues, 1 model selected  

> show sel atoms

> style sel sphere

Changed 54 atom styles  

> select clear

> set bgColor white

> select #1 & nucleicacid

Expected a keyword  

> select #1 & nucleic

5986 atoms, 6714 bonds, 292 residues, 1 model selected  

> ui tool show "Color Actions"

[Repeated 2 time(s)]

> color sel dim gray

> select clear

> select #1 & protein

6060 atoms, 6140 bonds, 764 residues, 1 model selected  

> color sel silver

> select clear

> select #2

6251 atoms, 6424 bonds, 782 residues, 1 model selected  

> color sel dark cyan

[Repeated 1 time(s)]

> lighting soft

> color sel dodger blue

> color sel cornflower blue

> color sel hot pink

> color sel dodger blue

> color sel cornflower blue

> hide #1 models

> select clear

> select #2/B:412@CE

1 atom, 1 residue, 1 model selected  

> select up

27 atoms, 29 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 27 atom styles  

> select clear

> hide #3 models

> select @h

Nothing selected  

> select clear

> show #2 atoms

> hide #2 atoms

> select :sam

54 atoms, 58 bonds, 2 residues, 1 model selected  

> show sel atoms

> select clear

> select :dum

3 atoms, 3 residues, 2 models selected  

> show sel & #2 atoms

> select clear

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> show #3 models

> hide #3 models

> select #2/Z:413@HG

1 atom, 1 residue, 1 model selected  

> cofr sel

> select clear

> select #2/B:412@CE

1 atom, 1 residue, 1 model selected  

> select add #2/B:412@SD

2 atoms, 1 residue, 1 model selected  

> select #2/Z:413@HG

1 atom, 1 residue, 1 model selected  

> select clear

> select #2/Z:413@HG

1 atom, 1 residue, 1 model selected  

> select add #2/B:412@CE

2 atoms, 2 residues, 1 model selected  

> select add #2/B:412@SD

3 atoms, 2 residues, 1 model selected  

> style sel ball

Changed 3 atom styles  

> select clear

> show #3 models

> turn x 10 models #2

[Repeated 7 time(s)]

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild

Opened BILD data containing 6 objects  

> hide #3 models

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild
> format bild

Summary of feedback from opening
/home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild  
---  
warnings | Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 4  
Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 8  
Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 12  
  
Opened BILD data containing 3 objects  

> hide #4 models

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild
> format bild

Opened BILD data containing 6 objects  

> close #3-6

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild
> format bild

Summary of feedback from opening
/home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild  
---  
warnings | Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 4  
Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 8  
Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 12  
  
Opened BILD data containing 3 objects  

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/XYZ-
> axes.bild format bild

Opened BILD data containing 4 objects  

> close #4

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild

Summary of feedback from opening
/home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild  
---  
warnings | Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 4  
Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 8  
Expected 'x1 y1 z1 x2 y2 z2' after .vector on line 12  
  
Opened BILD data containing 3 objects  

> hide #3 models

> hide #4 models

> show #4 models

> close #3-4

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild
> format bild

Opened BILD data containing 6 objects  

> open
> /home/venkatareddy/workspace/analysis_mcqeen_14062021/Rv2067c/paper_Rv2067c/Rv2067c_NCP_hypothesis/pdb_transformations_and_ProteinEuler/xyz_axes.bild
> format bild

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 333, in interceptRequest  
self._callback(info)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 92, in _intercept  
return interceptor(request_info, *args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 366, in intercept  
chimerax_intercept(*args, view=view, session=session)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 468, in chimerax_intercept  
session.ui.thread_safe(defer, session, qurl.url(no_formatting), from_dir)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py",
line 382, in thread_safe  
func(*args, **kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 459, in defer  
cxcmd(session, topic)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/ui/widgets/htmlview.py", line 477, in cxcmd  
run(session, cmd)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2856, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 118, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2856, in run  
result = ci.function(session, **kw_args)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 181, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 432, in collated_open  
return remember_data_format()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 403, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/bild/__init__.py", line 34, in open  
return bild.read_bild(session, data, file_name)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/bild/bild.py", line 589, in read_bild  
return b.parse_stream(stream)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/bild/bild.py", line 111, in parse_stream  
func(self, tokens)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/bild/bild.py", line 153, in arrow_command  
vertices2, normals2, triangles2 = get_cone(  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/bild/bild.py", line 646, in get_cone  
vertices, normals, triangles = surface.cone_geometry(radius, height=h,
caps=bottom)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/surface/shapes.py", line 182, in cone_geometry  
znorm = radius/height if points_up else -radius/height  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/surface/shapes.py", line 182, in cone_geometry  
znorm = radius/height if points_up else -radius/height  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 470.103.01
OpenGL renderer: NVIDIA GeForce GTX 1050 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: 
Model: 
OS: Ubuntu 20.04 focal
Architecture: 64bit ELF
Virutal Machine: none
CPU: 8 Intel(R) Core(TM) i7-3770 CPU @ 3.40GHz
Cache Size: 8192 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           15Gi       9.2Gi       3.5Gi       262Mi       2.8Gi       5.8Gi
	Swap:          15Gi       3.6Gi        11Gi

Graphics:
	01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP107 [GeForce GTX 1050 Ti] [10de:1c82] (rev a1)	
	Subsystem: Gigabyte Technology Co., Ltd GP107 [GeForce GTX 1050 Ti] [1458:3764]	
	Kernel driver in use: nvidia
Locale: ('en_IN', 'ISO8859-1')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.7
    ChimeraX-AddCharge: 1.2.1
    ChimeraX-AddH: 2.1.10
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.30.2
    ChimeraX-AtomicLibrary: 4.1.5
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3rc202111230539
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    distro: 1.6.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    line-profiler: 3.3.0
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    MolecularDynamicsViewer: 1.2
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.2
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.22
    psutil: 5.8.0
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.2
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0

Change History (3)

comment:1 by pett, 4 years ago

Component:	Unassigned → Input/Output
Owner:	set to Greg Couch
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Open BILD file: float division by zero

comment:2 by Greg Couch, 4 years ago

Status:	assigned → feedback

I've added code to skip degenerate bild commands, so you should only get a warning, not a traceback. That change will appear in the next successful daily build. So please download the daily ChimeraX build tomorrow and confirm that this is fixed, _or_, send us the problematic bild file, and we'll confirm that it fixed with your data.

comment:3 by Greg Couch, 4 years ago

Resolution:	→ fixed
Status:	feedback → closed

No response. Assume the fix worked.

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