Opened 4 years ago

Closed 3 years ago

#6253 closed defect (fixed)

opening 1plx as trajectory (coordset true) omits inter-residue bonds

Reported by: Elaine Meng Owned by: Greg Couch
Priority: high Milestone: 1.5
Component: MD/Ensemble Analysis Version:
Keywords: Cc: Eric Pettersen, Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

This is a short peptide NMR ensemble. If I open the regular way the bonds between residues are shown. If I "open 1plx coordset true" the bonds between residues are not shown. Tested in current daily build.

UCSF ChimeraX version: 1.4.dev202202250804 (2022-02-25)

Change History (4)

comment:1 by Eric Pettersen, 4 years ago

Cc: Eric Pettersen added
Owner: changed from Eric Pettersen to Greg Couch

This is an mmCIF problem. "open 1plx for pdb coords t" shows the inter-residue bonds. I believe those bonds are completely missing (not just hidden) when opened via mmCIF.

comment:2 by Eric Pettersen, 4 years ago

Cc: Tom Goddard added

comment:3 by Tom Goddard, 3 years ago

Milestone: → 1.5

Ran into this again #7259.

comment:4 by Greg Couch, 3 years ago

Resolution: → fixed
Status: assigned → closed

Fixed finding the residues to connect.

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