Opened 4 years ago

Closed 4 years ago

#6305 closed defect (fixed)

VR hands and gui clipped by scene clip planes

Reported by: goddard@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: VR Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19044
ChimeraX Version: 1.4.dev202203030220 (2022-03-03 02:20:09 UTC)
Description
Scene clip plane made with VR clip mouse mode clips the VR hand cones and VR user interface panels so they are often not visible.  I thought those were not supposed to be ever clipped.

Log:
UCSF ChimeraX version: 1.4.dev202203030220 (2022-03-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open C:\cygwin64\home\goddard\ucsf\presentations\vr-nih-
> feb2022\data\ferritin.cxs format session

Opened emdb 12873 as #4, grid size 480,480,480, pixel 0.652, shown at level
0.00424, step 2, values float32  
Opened emdb 12873 gaussian as #6, grid size 120,120,120, pixel 2.61, shown at
level 0.0039, step 1, values float32  
Log from Tue Feb 15 17:17:52 2022 Startup Messages  
---  
warning | Data format provider 'ZDOCK' supplied unknown keywords with format
description: {'is_default': 'false'}  
  
UCSF ChimeraX version: 1.4.dev202202151837 (2022-02-15)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 5n5f

5n5f title:  
Crystal structure of Haliangium ochraceum encapsulated ferritin [more info...]  
  
Chain information for 5n5f #1  
---  
Chain | Description | UniProt  
A B C D E F G H I J | encapsulated ferritin | D0LZ73_HALO1  
  
Non-standard residues in 5n5f #1  
---  
NA — sodium ion  
  

> open /Users/goddard/Downloads/ChimeraX/AlphaFold/prediction_1/best_model.pdb
> format pdb

Chain information for best_model.pdb #2  
---  
Chain | Description  
A | No description available  
  

> mmaker #2 to #1/A

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5n5f, chain A (#1) with best_model.pdb, chain A (#2), sequence
alignment score = 489.2  
RMSD between 91 pruned atom pairs is 0.463 angstroms; (across all 91 pairs:
0.463)  
  

> show atoms

> ui mousemode right tug

> open 12873 fromDatabase emdb

Summary of feedback from opening 12873 fetched from emdb  
---  
note | Fetching compressed map 12873 from
ftp://ftp.wwpdb.org/pub/emdb/structures/EMD-12873/map/emd_12873.map.gz  
  
Opened emdb 12873 as #4, grid size 480,480,480, pixel 0.652, shown at level
0.0165, step 2, values float32  

> view

> open 7oe2 format mmcif fromDatabase pdb

7oe2 title:  
Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry
expansion of icosahedral single particle reconstruction [more info...]  
  
Chain information for 7oe2 #5  
---  
Chain | Description | UniProt  
1 2 3 4 5 | Haliangium ochraceum Encapsulated ferritin localisation sequence |
D0LZ73_HALO1  
A B C D E | Linocin_M18 bacteriocin protein | D0LZ74_HALO1  
  

> volume #4 level 0.00424

> hide #2 models

> hide #!1 models

> fitmap #5 inMap #4

Fit molecule 7oe2 (#5) to map emdb 12873 (#4) using 10589 atoms  
average map value = 0.004732, steps = 292  
shifted from previous position = 24.9  
rotated from previous position = 24.5 degrees  
atoms outside contour = 5952, contour level = 0.0042398  
  
Position of 7oe2 (#5) relative to emdb 12873 (#4) coordinates:  
Matrix rotation and translation  
0.91053976 -0.19232066 -0.36596462 89.05634354  
0.17864635 0.98133200 -0.07122497 -46.71185116  
0.37283082 -0.00052507 0.92789919 -91.74084624  
Axis 0.08520945 -0.89041639 0.44709954  
Axis point 288.89173644 0.00000000 170.82623441  
Rotation angle (degrees) 24.51047046  
Shift along axis 8.16414932  
  

> hide #5 models

> show #5 models

> hide #5 models

> show #5 models

> vop gaussian #4 sdev 1.96

Opened emdb 12873 gaussian as #6, grid size 480,480,480, pixel 0.652, shown at
step 1, values float32  

> hide #5 models

> view orient

> show #5 models

> hide #5 models

> show #5 models

> hide #5 models

> show #5 models

> ui mousemode right "move picked models"

> view matrix models
> #5,0.91054,-0.19232,-0.36596,82.079,0.17865,0.98133,-0.071225,-79.04,0.37283,-0.00052507,0.9279,-116.54

> fitmap #5 inMap #6

Fit molecule 7oe2 (#5) to map emdb 12873 gaussian (#6) using 10589 atoms  
average map value = 0.004612, steps = 200  
shifted from previous position = 16.8  
rotated from previous position = 16.7 degrees  
atoms outside contour = 9560, contour level = 0.0073394  
  
Position of 7oe2 (#5) relative to emdb 12873 gaussian (#6) coordinates:  
Matrix rotation and translation  
0.97774690 -0.00930949 -0.20958134 12.02272988  
0.03648857 0.99133437 0.12619334 -56.63541392  
0.20659038 -0.13103247 0.96961379 -43.91896589  
Axis -0.52346857 -0.84693218 0.09320157  
Axis point 247.91471428 0.00000000 124.90403528  
Rotation angle (degrees) 14.22282997  
Shift along axis 37.57951693  
  

> hide #5 models

> show #5 models

> hide #5 models

> show #5 models

> close #6

> volume gaussian #4 sDev 5

Opened emdb 12873 gaussian as #6, grid size 480,480,480, pixel 0.652, shown at
step 1, values float32  

> volume #6 level 0.003765

> fitmap #5 inMap #6

Fit molecule 7oe2 (#5) to map emdb 12873 gaussian (#6) using 10589 atoms  
average map value = 0.004506, steps = 404  
shifted from previous position = 9.65  
rotated from previous position = 31.8 degrees  
atoms outside contour = 1664, contour level = 0.0037647  
  
Position of 7oe2 (#5) relative to emdb 12873 gaussian (#6) coordinates:  
Matrix rotation and translation  
0.98828342 0.12412747 -0.08881588 -36.40669678  
-0.14825672 0.91899735 -0.36532701 80.16530233  
0.03627444 0.37421417 0.92663257 -93.87496277  
Axis 0.92677398 -0.15675997 -0.34134485  
Axis point 0.00000000 292.95641979 148.35768660  
Rotation angle (degrees) 23.51485417  
Shift along axis -14.26375421  
  

> volume #6 level 0.004316

> hide #!6 models

> clip

> hide #!4 models

> show #!6 models

> volume #6 level 0.003405

> ui mousemode right clip

> volume #6 level 0.004347

> help vol gauss

> close #6

> volume gaussian #4 sDev 3 step 4

Opened emdb 12873 gaussian as #6, grid size 120,120,120, pixel 2.61, shown at
step 1, values float32  

> volume #6 level 0.003896

> ui mousemode right "pick blobs"

> measure blob #!6.1 triangleNumber 70394 color #0000ccff outline true

Surface emdb 12873 gaussian #6.1 blob:  
volume = 78705  
area = 15620  
size = 78.554 66.674 42.089  
  

> measure blob #!6.1 triangleNumber 152159 color #1ffd0bff

Surface emdb 12873 gaussian #6.1 blob:  
volume = 83180  
area = 15251  
size = 79.229 68.325 42.064  
  

> measure blob #!6.1.1 triangleNumber 2051 color #da0885ff

Surface cap front #6.1.1 blob:  
volume = 0.00027329 (1 holes)  
area = 81.723  
size = 17.46 7.3457 0.013351  
boundary = 48.857  
  

> measure blob #!6.1 triangleNumber 131265 color #5c8dc0ff

Surface emdb 12873 gaussian #6.1 blob:  
volume = 54398  
area = 13406  
size = 68.215 66.896 38.139  
  

> measure blob #!6.1 triangleNumber 134826 color #4bcf81ff

Surface emdb 12873 gaussian #6.1 blob:  
volume = 82961  
area = 15802  
size = 82.047 68.507 42.295  
  

> measure blob #!6.1 triangleNumber 13368 color #98a47aff

Surface emdb 12873 gaussian #6.1 blob:  
volume = 2.2105e+06  
area = 3.9482e+05  
size = 235.6 234.21 241.1  
  

> open 5n5f format mmcif fromDatabase pdb

5n5f title:  
Crystal structure of Haliangium ochraceum encapsulated ferritin [more info...]  
  
Chain information for 5n5f #7  
---  
Chain | Description | UniProt  
A B C D E F G H I J | encapsulated ferritin | D0LZ73_HALO1  
  
Non-standard residues in 5n5f #7  
---  
NA — sodium ion  
  

> ui mousemode right "move picked models"

> view matrix models #7,1,0,0,118.84,0,1,0,106.24,0,0,1,-92.01

> lighting simple

> view matrix models #7,1,0,0,193.89,0,1,0,196.86,0,0,1,9.9052

> view matrix models #7,1,0,0,191.91,0,1,0,179.73,0,0,1,10.296

> hide #5 models

> fitmap #7 inMap #6

Fit molecule 5n5f (#7) to map emdb 12873 gaussian (#6) using 15189 atoms  
average map value = 0.002953, steps = 96  
shifted from previous position = 12.8  
rotated from previous position = 38.1 degrees  
atoms outside contour = 10606, contour level = 0.0038961  
  
Position of 5n5f (#7) relative to emdb 12873 gaussian (#6) coordinates:  
Matrix rotation and translation  
0.79420998 -0.17641893 -0.58146957 281.59908754  
0.10003328 0.98182972 -0.16125679 199.41346375  
0.59935286 0.06990545 0.79742672 47.85089785  
Axis 0.18723862 -0.95645189 0.22392294  
Axis point 44.78580067 0.00000000 509.42629818  
Rotation angle (degrees) 38.11873553  
Shift along axis -127.28824487  
  

> show #5 models

> hide #!6 models

> clip false

Expected a keyword  

> clip off

> open /Users/goddard/ucsf/presentations/vr-nih-
> feb2022/data/alphafold_uniprot_D0LZ73.pdb

Summary of feedback from opening /Users/goddard/ucsf/presentations/vr-nih-
feb2022/data/alphafold_uniprot_D0LZ73.pdb  
---  
warning | Ignored bad PDB record found on line 2026  
  
Chain information for alphafold_uniprot_D0LZ73.pdb #8  
---  
Chain | Description  
A | No description available  
  

> mmaker #8 to #7/G

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 5n5f, chain G (#7) with alphafold_uniprot_D0LZ73.pdb, chain A (#8),
sequence alignment score = 487.4  
RMSD between 92 pruned atom pairs is 0.443 angstroms; (across all 92 pairs:
0.443)  
  

> close #3

> close #1

> close #2

> lighting soft

> show #8

> save /Users/goddard/ucsf/presentations/vr-nih-feb2022/data/ferritin.cxs

> ui tool show "Show Sequence Viewer"

> sequence chain #8

Alignment identifier is 8/A  

> select #8/A:117

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #8/A:117-125

124 atoms, 123 bonds, 9 residues, 1 model selected  

> color sel magenta

> color sel byhetero

> select clear

> save /Users/goddard/ucsf/presentations/vr-nih-feb2022/data/ferritin.cxs

——— End of log from Tue Feb 15 17:17:52 2022 ———

opened ChimeraX session  

> hide #5 models

> hide #!7 models

> hide #8 models

> vr true

> lighting simple

started SteamVR rendering  
VR mode contour level  

> volume #6 level 0.0051

> volume #6 level 0.006527

> volume #6 level 0.007791

> volume #6 level 0.004916

> volume #6 level 0.003875

> lighting soft

> lighting simple

> volume #6 level 0.003539

VR mode clip  

> lighting soft

> lighting simple

VR mode pick blobs  

> measure blob #!6.1 triangleNumber 130389 color #0000ccff outline true

Surface emdb 12873 gaussian #6.1 blob:  
volume = 73784  
area = 13189  
size = 72.859 69.244 39.776  
  

> measure blob #!6.1 triangleNumber 138622 color #b5b21cff outline true

Surface emdb 12873 gaussian #6.1 blob:  
volume = 1.0362e+05  
area = 14182  
size = 82.902 69.843 43.398  
  

> measure blob #!6.1 triangleNumber 140635 color #17aeb9ff outline true

Surface emdb 12873 gaussian #6.1 blob:  
volume = 1.0228e+05  
area = 14975  
size = 80.69 71.665 43.816  
  

> measure blob #!6.1 triangleNumber 67989 color #36c29cff outline true

Surface emdb 12873 gaussian #6.1 blob:  
volume = 99075  
area = 14535  
size = 80.82 68.866 43.625  
  




OpenGL version: 3.3.0 NVIDIA 430.39
OpenGL renderer: Quadro P6000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Locale: en_US.cp1252
Qt version: PyQt6 6.2.3, Qt 6.2.3
Qt platform: windows

Manufacturer: Gigabyte Technology Co., Ltd.
Model: To be filled by O.E.M.
OS: Microsoft Windows 10 Home (Build 19044)
Memory: 66,135,482,368
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-6700K CPU @ 4.00GHz
OSLanguage: en-US

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.5.2
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.36.2
    ChimeraX-AtomicLibrary: 6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.1
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4.dev202203030220
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.2
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.8
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-RealSense: 1.8
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.7.7
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.16.2
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.5.1
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.29.1
    funcparserlib: 1.0.0a0
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.26
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.9.2
    kiwisolver: 1.3.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.0
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.4
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.0
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.28
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.7
    PyQt6-commercial: 6.2.3
    PyQt6-sip: 13.2.0
    PyQt6-WebEngine-commercial: 6.2.1
    pyrealsense2: 2.50.0.3812
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 303
    pyzmq: 22.3.0
    qtconsole: 5.2.2
    QtPy: 2.0.1
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.8
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Tom Goddard, 4 years ago

Component: Unassigned → VR
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → VR hands and gui clipped by scene clip planes

comment:2 by Tom Goddard, 4 years ago

Resolution: → fixed
Status: assigned → closed

Fixed.

In the past I made depth cue not apply to the VR gui elements. But when I added the ability to make clip planes not apply to specific models a few years ago I did not use it for VR. Long overdue. Also made the VR meeting head and hand not clip.

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