Saving command history: No space left on device

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM and NMR Structure and
> Figures/Figure1 BAM_OMPTA/BAM_OMPTA_5LJO.cxs"

Log from Thu Nov 11 15:38:00 2021UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/BAM.cxs"

Log from Thu Nov 11 14:42:13 2021UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/tafegi16/Dropbox/OMPTA_Manuscript/EM Structure/J950_BAM-
> Pol8_real_space_refined-coot-13_D-
> Peptide_real_space_refined_35_2_Loop1Update2021-05-05.pdb"

Chain information for J950_BAM-Pol8_real_space_refined-coot-13_D-
Peptide_real_space_refined_35_2_Loop1Update2021-05-05.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
  

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> preset cartoons/nucleotides ribbons/slabs

Changed 24853 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:764-810

716 atoms, 728 bonds, 47 residues, 1 model selected  

> select /A:24-810

11921 atoms, 12067 bonds, 787 residues, 1 model selected  

> color sel blue

> select clear

> ui tool show "Show Sequence Viewer"

> sequence chain /F

Alignment identifier is 1/F  

> select /F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> show sel target ab

> color sel orange

> ui tool show "Color Actions"

> color sel crimson

> color sel orange red

> color sel tomato

> color sel dark salmon

> color sel salmon

> color sel sandy brown

> color sel red

> color sel orange red

> color sel coral

> select clear

> select clear

> select /F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> surface sel

> ui tool show "Color Actions"

> color sel light salmon

> color sel salmon

> color sel crimson

> color sel coral

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> select /F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> surface hidePatches (#!1 & sel)

> ui tool show "Color Actions"

> color sel orange red

> color sel sandy brown

> color sel goldenrod

> color sel salmon

> color sel coral

> color sel light salmon

> color sel sandy brown

> color sel crimson

> color sel coral

> select clear

> select clear

> select clear

> surface

> lighting simple

> lighting soft

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> lighting soft

> select /A:810

14 atoms, 15 bonds, 1 residue, 1 model selected  

> select /A:24-810

11921 atoms, 12067 bonds, 787 residues, 1 model selected  

> color (#!1 & sel) blue

> select clear

> undo

> color (#!1 & sel) medium blue

> ui tool show "Color Actions"

> color sel royal blue

> select clear

> save "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/001.jpg" width 1700 height
> 1096 supersample 3

> surface hidePatches

> select /A:810

14 atoms, 15 bonds, 1 residue, 1 model selected  

> select /A:24-810

11921 atoms, 12067 bonds, 787 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel royal blue

> color sel royal blue

> color sel royal blue

> color sel royal blue

> select clear

> select /F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> color (#!1 & sel) byhetero

> select clear

> save "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/BAM_OMPTA_Fig1_Nature.pdb"
> relModel #1

> open "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/BAM_OMPTA_Fig1_Nature.pdb"

Chain information for BAM_OMPTA_Fig1_Nature.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
  

> undo

> close #2

> select clear

> save "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/BAM_OMPTA_Fig1_Nature.pdb"

> open "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/BAM_OMPTA_Fig1_Nature.pdb"

Chain information for BAM_OMPTA_Fig1_Nature.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
  

> close #2

> save "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/BAM.cxs"

——— End of log from Thu Nov 11 14:42:13 2021 ———

opened ChimeraX session  

> open "/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM Structure and
> Figures/pdb files/5LJO-Iadanza et al 2016/5ljo.pdb"

5ljo.pdb title:  
E. Coli bam complex (bamabcde) by cryoem [more info...]  
  
Chain information for 5ljo.pdb #2  
---  
Chain | Description  
A | outer membrane protein assembly factor bama  
B | outer membrane protein assembly factor bamb  
C | outer membrane protein assembly factor bamc  
D | outer membrane protein assembly factor bamd  
E | outer membrane protein assembly factor bame  
  

> hide #!1 models

> preset cartoons/nucleotides ribbons/slabs

Changed 24947 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> ui tool show Matchmaker

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker J950_BAM-Pol8_real_space_refined-coot-13_D-
Peptide_real_space_refined_35_2_Loop1Update2021-05-05.pdb, chain A (#1) with
5ljo.pdb, chain A (#2), sequence alignment score = 3831.5  
RMSD between 641 pruned atom pairs is 1.187 angstroms; (across all 783 pairs:
1.823)  
  

> show #!1 models

> ui tool show "Show Sequence Viewer"

> sequence chain #2/A

Alignment identifier is 2/A  

> select #2/A:806

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select #2/A:24-806

12102 atoms, 12245 bonds, 783 residues, 1 model selected  

> color sel yellow

> color sel magenta

> color sel dim gray

> color sel red

> select clear

> select #2/A:762-806

708 atoms, 719 bonds, 45 residues, 1 model selected  

> select #2/A:24-806

12102 atoms, 12245 bonds, 783 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel gold

> color sel coral

> color sel spring green

> color sel teal

> color sel violet

> color sel cyan

> color sel dark green

> color sel chocolate

> color sel dark red

> color sel orange

> color sel coral

> select clear

Drag select of 5 atoms, 6 bonds  

> delete atoms sel

> delete bonds sel

Drag select of 2 atoms, 1 bonds  

> delete atoms sel

> delete bonds sel

Drag select of 9 atoms, 9 bonds  

> delete atoms sel

> delete bonds sel

Drag select of 17 atoms, 17 bonds  

> delete atoms sel

> delete bonds sel

Drag select of 2 atoms  

> delete atoms sel

> delete bonds sel

> select clear

> select #2/A:762-806

708 atoms, 719 bonds, 45 residues, 1 model selected  

> select #2/A:24-806

12102 atoms, 12245 bonds, 783 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel lime

> color sel fire brick

> color sel royal blue

> color sel turquoise

> color sel dark blue

> color sel light slate gray

> color sel slate gray

> select clear

> ui tool show "Show Sequence Viewer"

> sequence chain #1/F

Alignment identifier is 1/F  

> select #1/F:5-12

65 atoms, 66 bonds, 8 residues, 1 model selected  

> show (#!1 & sel) target ab

> select #1/F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> show (#!1 & sel) target ab

> ui tool show "Color Actions"

> ui tool show "Color Actions"

> color sel coral

Drag select of 3 atoms, 4 bonds  

> color sel coral

Drag select of 1 atoms, 1 bonds  

> color sel coral

> select #1/F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> color (#!1 & sel) byhetero

Drag select of 4 atoms, 3 bonds  

> color (#!1 & sel) byhetero

> select #1/F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> surface (#!1 & sel)

> color sel coral

> select clear

Drag select of J950_BAM-Pol8_real_space_refined-coot-13_D-
Peptide_real_space_refined_35_2_Loop1Update2021-05-05.pdb_F SES surface, 682
of 18822 triangles, 4 atoms, 3 bonds  

> surface (#!1 & sel)

> undo

> undo

> undo

> hide #1.6 models

> show #1.6 models

> select #1.6

1356 atoms, 88 residues, 1 model selected  

> ~select #1.6

1 model selected  

> select #1.1

97 atoms, 12 residues, 1 model selected  

> ~select #1.1

1 model selected  

> select #1

24859 atoms, 25138 bonds, 1641 residues, 1 model selected  

> ~select #1

6 models selected  

> hide #1.1 models

> hide #1.2 models

> hide #1.3 models

> hide #1.4 models

> hide #1.5 models

> show #1.5 models

> show #1.4 models

> show #1.3 models

> show #1.2 models

> hide #1.2 models

> show #1.1 models

> show #1.2 models

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> undo

> select clear

> ui tool show "Show Sequence Viewer"

> sequence chain #1/F

Alignment identifier is 1/F  

> select #1/F:12

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/F:1-12

97 atoms, 100 bonds, 12 residues, 1 model selected  

> surface (#!1 & sel)

> select #1/F:2

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/F:2

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select #1/F:1-2

13 atoms, 12 bonds, 2 residues, 1 model selected  

> select #1/F:1-2

13 atoms, 12 bonds, 2 residues, 1 model selected  

> select clear

Drag select of 1 atoms  
Drag select of 1 atoms  
Drag select of 1 atoms, 1 bonds  

> surface sel

> ui tool show "Color Actions"

> color sel coral

> select clear

> select clear

Drag select of J950_BAM-Pol8_real_space_refined-coot-13_D-
Peptide_real_space_refined_35_2_Loop1Update2021-05-05.pdb_F SES surface, 11 of
356 triangles, 1 atoms  

> undo

> undo

> save "/Users/tafegi16/Desktop/Figure1 BAM_OMPTA/BAM_OMPTA_5LJO.cxs"

——— End of log from Thu Nov 11 15:38:00 2021 ———

opened ChimeraX session  

> hide #2 models

> hide #1.1 models

> show #1.1 models

> hide #1.3 models

> show #1.3 models

> show #1.2 models

> hide #1.2 models

> ui tool show "Show Sequence Viewer"

> sequence chain #1/A

Alignment identifier is 1/A  

> sequence chain #1/B #2/B

Alignment identifier is 1  

> sequence chain #1/C #2/C

Alignment identifier is 2  

> sequence chain #1/D

Alignment identifier is 1/D  

> sequence chain #1/E

Alignment identifier is 1/E  

> sequence chain #1/F

Destroying pre-existing alignment with identifier 1/F  
Alignment identifier is 1/F  

> select #1/A:810

14 atoms, 15 bonds, 1 residue, 1 model selected  

> select #1/A:24-810

11921 atoms, 12067 bonds, 787 residues, 1 model selected  

> surface (#!1 & sel)

> select #1/B:22-23 #2/B:22-23

77 atoms, 77 bonds, 4 residues, 2 models selected  

> select #1/B:22-392 #2/B:22-392

11067 atoms, 11169 bonds, 742 residues, 2 models selected  
Seqview [ID: 1] region 2 chains [1-371] RMSD: 2.189  
  

> color (#!1 & sel) purple

> surface (#!1 & sel)

> color (#!1 & sel) cornflower blue

> ui tool show "Color Actions"

> color sel royal blue

> color sel royal blue

> color sel orchid

> color sel magenta

> color sel orchid

> color sel dark blue

> color sel dark blue

> color sel medium slate blue

> select #1/C:189 #2/C:189

20 atoms, 18 bonds, 2 residues, 2 models selected  

> select #1/C:25-189 #2/C:25-189

4995 atoms, 5043 bonds, 330 residues, 2 models selected  
Seqview [ID: 2] region 2 chains [1-165] RMSD: 2.660  
  

> surface (#!1 & sel)

> ui tool show "Color Actions"

> color sel blue

> color sel cyan

> color sel deep sky blue

> select #1/D:242

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select #1/D:26-242

3449 atoms, 3489 bonds, 217 residues, 1 model selected  

> color (#!1 & sel) cyan

> surface (#!1 & sel)

> select #1/B:348-392 #2/B:348-392

1382 atoms, 1392 bonds, 90 residues, 2 models selected  

> select #1/B:22-392 #2/B:22-392

11067 atoms, 11169 bonds, 742 residues, 2 models selected  
Seqview [ID: 1] region 2 chains [1-371] RMSD: 2.189  
  

> ui tool show "Color Actions"

> color sel deep sky blue

> select #1/C:189 #2/C:189

20 atoms, 18 bonds, 2 residues, 2 models selected  

> select #1/C:25-189 #2/C:25-189

4995 atoms, 5043 bonds, 330 residues, 2 models selected  
Seqview [ID: 2] region 2 chains [1-165] RMSD: 2.660  
  

> ui tool show "Color Actions"

> color sel indigo

> color sel pale violet red

> color sel medium slate blue

> select clear

> lighting simple

> lighting soft

> lighting full

> lighting simple

> lighting soft

> lighting full

> lighting soft

> lighting soft

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> lighting flat

> lighting full

> lighting soft

> select clear

> save "/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM and NMR Structure and
> Figures/Figure1 BAM_OMPTA/012.jpg" width 1646 height 1052 supersample 3

Traceback (most recent call last):  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/cmd_line/tool.py", line 308, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/cmd_line/tool.py", line 406, in add  
self._history.enqueue((item, typed))  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 171, in enqueue  
self.save()  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 201, in save  
self._history.save(self._queue)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 174, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 173, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Library/Application Support/ChimeraX/commands.68678.tmp'  
  
Error processing trigger "command started":  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Library/Application Support/ChimeraX/commands.68678.tmp'  
  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 173, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 51, in display  
run(session, cmd)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/cmd.py", line 87, in provider_save  
provider_info.bundle_info.run_provider(session, provider_info.format_name,  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/image_formats/__init__.py", line 45, in save  
save_image(session, path, format_name, **kw)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/image_formats/save.py", line 123, in save_image  
i.save(path, format_name, **metadata)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/PIL/Image.py", line 2155, in save  
fp = builtins.open(filename, "w+b")  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM and NMR Structure and
Figures/Figure1 BAM_OMPTA/012.jpg'  
  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM and NMR Structure and
Figures/Figure1 BAM_OMPTA/012.jpg'  
  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/PIL/Image.py", line 2155, in save  
fp = builtins.open(filename, "w+b")  
  
See log for complete Python traceback.  
  

> save "/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM and NMR Structure and
> Figures/Figure1 BAM_OMPTA/012.jpg" width 1546 height 988 supersample 3

Traceback (most recent call last):  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/cmd_line/tool.py", line 308, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/cmd_line/tool.py", line 406, in add  
self._history.enqueue((item, typed))  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 171, in enqueue  
self.save()  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 201, in save  
self._history.save(self._queue)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 174, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 173, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Library/Application Support/ChimeraX/commands.68678.tmp'  
  
Error processing trigger "command started":  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Library/Application Support/ChimeraX/commands.68678.tmp'  
  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 173, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 51, in display  
run(session, cmd)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/cmd.py", line 87, in provider_save  
provider_info.bundle_info.run_provider(session, provider_info.format_name,  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/image_formats/__init__.py", line 45, in save  
save_image(session, path, format_name, **kw)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/image_formats/save.py", line 123, in save_image  
i.save(path, format_name, **metadata)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/PIL/Image.py", line 2155, in save  
fp = builtins.open(filename, "w+b")  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM and NMR Structure and
Figures/Figure1 BAM_OMPTA/012.jpg'  
  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Dropbox/OMPTA_Manuscript/Cryo-EM and NMR Structure and
Figures/Figure1 BAM_OMPTA/012.jpg'  
  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/PIL/Image.py", line 2155, in save  
fp = builtins.open(filename, "w+b")  
  
See log for complete Python traceback.  
  

> save /Users/tafegi16/Desktop/012.jpg width 1646 height 1052 supersample 3

Traceback (most recent call last):  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/cmd_line/tool.py", line 308, in _command_started_cb  
self.history_dialog.add(self._just_typed_command or cmd_text,  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/cmd_line/tool.py", line 406, in add  
self._history.enqueue((item, typed))  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 171, in enqueue  
self.save()  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 201, in save  
self._history.save(self._queue)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/history.py", line 108, in save  
with SaveTextFile(self._filename) as f:  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 174, in __init__  
SaveFile.__init__(self, filename, open=open_text, critical=critical)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 74, in __init__  
self._f = open(self._tmp_filename)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 173, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Library/Application Support/ChimeraX/commands.68678.tmp'  
  
Error processing trigger "command started":  
OSError: [Errno 28] No space left on device:
'/Users/tafegi16/Library/Application Support/ChimeraX/commands.68678.tmp'  
  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/safesave.py", line 173, in open_text  
return open(filename, 'w', newline=newline, encoding=encoding)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/dialog.py", line 51, in display  
run(session, cmd)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/core/commands/cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/save_command/cmd.py", line 87, in provider_save  
provider_info.bundle_info.run_provider(session, provider_info.format_name,  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/image_formats/__init__.py", line 45, in save  
save_image(session, path, format_name, **kw)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/image_formats/save.py", line 123, in save_image  
i.save(path, format_name, **metadata)  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/PIL/Image.py", line 2155, in save  
fp = builtins.open(filename, "w+b")  
OSError: [Errno 28] No space left on device: '/Users/tafegi16/Desktop/012.jpg'  
  
OSError: [Errno 28] No space left on device: '/Users/tafegi16/Desktop/012.jpg'  
  
File
"/Users/tafegi16/Desktop/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/PIL/Image.py", line 2155, in save  
fp = builtins.open(filename, "w+b")  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 ATI-3.10.22
OpenGL renderer: AMD Radeon Pro 560X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:

    Hardware Overview:

      Model Name: iMac
      Model Identifier: iMac19,2
      Processor Name: 6-Core Intel Core i5
      Processor Speed: 3 GHz
      Number of Processors: 1
      Total Number of Cores: 6
      L2 Cache (per Core): 256 KB
      L3 Cache: 9 MB
      Memory: 16 GB
      Boot ROM Version: 1554.140.20.0.0
      SMC Version (system): 2.47f3

Software:

    System Software Overview:

      System Version: macOS 10.15.7 (19H1323)
      Kernel Version: Darwin 19.6.0
      Time since boot: 22 days 2:56

Graphics/Displays:

    Radeon Pro 560X:

      Chipset Model: Radeon Pro 560X
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x8
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x67ef
      Revision ID: 0x00c2
      ROM Revision: 113-C981AA-042
      VBIOS Version: 113-C9819A1X-009
      EFI Driver Version: 01.B1.042
      Metal: Supported, feature set macOS GPUFamily2 v1

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0