Opened 4 years ago
Closed 4 years ago
#6203 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
Reported by: | Owned by: | Eric Pettersen | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Platform | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Windows-10-10.0.19042 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program FWindows fatal exception: code 0x8001010e Windows fatal exception: ilcode 0x8001010e Windows fatal exception: escode 0x8001010e Windows fatal exception: code 0x8001010e\C hWindows fatal exception: icode 0xm8001010ee rWindows fatal exception: acode 0xX8001010e 1Windows fatal exception: .code 0x38001010e\ bWindows fatal exception: icode 0xn8001010e\ liWindows fatal exception: bcode 0x\8001010es ite-pWindows fatal exception: acode 0xc8001010ek ageWindows fatal exception: scode 0x\8001010ec himerax\open_command\diWindows fatal exception: acode 0xl8001010eo g.pyWindows fatal exception: "code 0x, line 8001010e107 in code 0x 8001010e File "CWindows fatal exception: :code 0x\8001010eP roWindows fatal exception: gcode 0xr8001010ea m Windows fatal exception: Fcode 0xi8001010el esWindows fatal exception: \code 0xC8001010eh imWindows fatal exception: ecode 0xr8001010ea X Windows fatal exception: 1code 0x.8001010e3 \bWindows fatal exception: icode 0xn8001010e\ lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program FileWindows fatal exception: scode 0x\8001010eC himeWindows fatal exception: rcode 0xa8001010eX 1.Windows fatal exception: 3code 0x\8001010eb in\Windows fatal exception: lcode 0xi8001010eb \siWindows fatal exception: tcode 0xe8001010e- pacWindows fatal exception: kcode 0xa8001010eg es\Windows fatal exception: Ccode 0xh8001010ei merWindows fatal exception: acode 0xX8001010e_ maiWindows fatal exception: ncode 0x.8001010ep y", line Windows fatal exception: 867code 0x in 8001010ei nitWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\Windows fatal exception: Ccode 0xh8001010ei meraXWindows fatal exception: code 0x18001010e. 3\biWindows fatal exception: ncode 0x\8001010el ib\rWindows fatal exception: ucode 0xn8001010ep y.pyWindows fatal exception: "code 0x, line 8001010e87 in _ruWindows fatal exception: ncode 0x_8001010ec ode Windows fatal exception: File code 0x"8001010eC :\PrWindows fatal exception: ocode 0xg8001010er am FWindows fatal exception: icode 0xl8001010ee s\CWindows fatal exception: hcode 0xi8001010em eraWindows fatal exception: Xcode 0x 8001010e1 .3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\oWindows fatal exception: pcode 0xe8001010en _comWindows fatal exception: mcode 0xa8001010en d\dWindows fatal exception: icode 0xa8001010el ogWindows fatal exception: .code 0xp8001010ey ", line Windows fatal exception: 135code 0x in 8001010es hoWindows fatal exception: wcode 0x_8001010eo peWindows fatal exception: ncode 0x_8001010ef ilWindows fatal exception: ecode 0x_8001010ed iaWindows fatal exception: lcode 0xo8001010eg File Windows fatal exception: "code 0xC8001010e: \PWindows fatal exception: rcode 0xo8001010eg ram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.Windows fatal exception: pcode 0xy8001010e" , line 301 in Windows fatal exception: ecode 0xv8001010eent_ loopWindows fatal exception: code 0x File 8001010e" C:\PWindows fatal exception: rcode 0xo8001010eg ram Windows fatal exception: Fcode 0xi8001010el es\Windows fatal exception: Ccode 0xh8001010ei merWindows fatal exception: acode 0xX8001010e 1.Windows fatal exception: 3code 0x\8001010eb inWindows fatal exception: \code 0xl8001010ei b\Windows fatal exception: scode 0xi8001010et e-pWindows fatal exception: acode 0xc8001010ek ages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_Windows fatal exception: mcode 0xo8001010ed ule_as_Windows fatal exception: mcode 0xa8001010ei n Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "CWindows fatal exception: :code 0x\8001010eP rogWindows fatal exception: rcode 0xa8001010em FiWindows fatal exception: lcode 0xe8001010es \ChWindows fatal exception: icode 0xm8001010ee raWindows fatal exception: Xcode 0x 8001010e1 .3\Windows fatal exception: bcode 0xi8001010en \liWindows fatal exception: bcode 0x\8001010es itWindows fatal exception: ecode 0x-8001010ep ackWindows fatal exception: acode 0xg8001010ee s\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\siWindows fatal exception: tcode 0xe8001010e- packWindows fatal exception: acode 0xg8001010ee s\cWindows fatal exception: hcode 0xi8001010em erWindows fatal exception: acode 0xx8001010e\ opWindows fatal exception: ecode 0xn8001010e_ coWindows fatal exception: mcode 0xm8001010ea ndWindows fatal exception: \code 0xd8001010ei alWindows fatal exception: ocode 0xg8001010e. pyWindows fatal exception: "code 0x, line 8001010e107 in 8001010e File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packagesWindows fatal exception: \code 0xC8001010eh imerWindows fatal exception: acode 0xX8001010e_ maiWindows fatal exception: ncode 0x.8001010ep y"Windows fatal exception: , line code 0x8678001010e in inWindows fatal exception: icode 0xt8001010e File "Windows fatal exception: Ccode 0x:8001010e\ PrWindows fatal exception: ocode 0xg8001010er amWindows fatal exception: code 0xF8001010ei leWindows fatal exception: scode 0x\8001010eC hiWindows fatal exception: mcode 0xe8001010er aXWindows fatal exception: code 0x18001010e. 3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimerWindows fatal exception: acode 0xX8001010e 1.3\bWindows fatal exception: icode 0xn8001010e\ lib\Windows fatal exception: scode 0xi8001010et e-pacWindows fatal exception: kcode 0xa8001010eg es\cWindows fatal exception: hcode 0xi8001010em eraxWindows fatal exception: \code 0xo8001010ep en_cWindows fatal exception: ocode 0xm8001010em and\Windows fatal exception: dcode 0xi8001010ea log.Windows fatal exception: pcode 0xy8001010e" , line 107 in Windows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_cWindows fatal exception: ocode 0xm8001010em and\Windows fatal exception: dcode 0xi8001010ea logWindows fatal exception: .code 0xp8001010ey ", line Windows fatal exception: 135code 0x in 8001010es hoWindows fatal exception: wcode 0x_8001010eo peWindows fatal exception: ncode 0x_8001010ef ilWindows fatal exception: ecode 0x_8001010ed iaWindows fatal exception: lcode 0xo8001010eg File Windows fatal exception: "code 0xC8001010e: \PWindows fatal exception: rcode 0xo8001010eg raWindows fatal exception: mcode 0x 8001010eF iles\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bWindows fatal exception: icode 0xn8001010e\ lib\ruWindows fatal exception: ncode 0xp8001010ey .pyWindows fatal exception: "code 0x, line 8001010e87 in _Windows fatal exception: rcode 0xu8001010en _cWindows fatal exception: ocode 0xd8001010ee File Windows fatal exception: "code 0xC8001010e: \PWindows fatal exception: rcode 0xo8001010eg raWindows fatal exception: mcode 0x 8001010eF ilWindows fatal exception: ecode 0xs8001010e\ ChWindows fatal exception: icode 0xm8001010ee raWindows fatal exception: Xcode 0x 8001010e1 .3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\openWindows fatal exception: _code 0xc8001010eo mmanWindows fatal exception: dcode 0x\8001010ed ialWindows fatal exception: ocode 0xg8001010e. pyWindows fatal exception: "code 0x, line 8001010e107 in 8001010e File "Windows fatal exception: Ccode 0x:8001010e\ PrWindows fatal exception: ocode 0xg8001010er amWindows fatal exception: code 0xF8001010ei leWindows fatal exception: scode 0x\8001010eC hiWindows fatal exception: mcode 0xe8001010er aX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\openWindows fatal exception: _code 0xc8001010eo mmanWindows fatal exception: dcode 0x\8001010ed iaWindows fatal exception: lcode 0xo8001010eg .pWindows fatal exception: ycode 0x"8001010e, line 107 in Windows fatal exception: File Windows fatal exception: "code 0xC8001010e: \PWindows fatal exception: rcode 0xo8001010eg raWindows fatal exception: mcode 0x 8001010eF ilWindows fatal exception: ecode 0xs8001010e\ ChWindows fatal exception: icode 0xm8001010ee rWindows fatal exception: acode 0xX8001010e 1.3\Windows fatal exception: bcode 0xi8001010en \lWindows fatal exception: icode 0xb8001010e\ siWindows fatal exception: tcode 0xe8001010e- paWindows fatal exception: ccode 0xk8001010ea geWindows fatal exception: scode 0x\8001010ec hiWindows fatal exception: mcode 0xe8001010er axWindows fatal exception: \code 0xu8001010ei \gWindows fatal exception: ucode 0xi8001010e. pyWindows fatal exception: "code 0x, line 8001010e301 in eWindows fatal exception: vcode 0xe8001010en t_loop File "C:\PWindows fatal exception: rcode 0xo8001010eg ram FWindows fatal exception: icode 0xl8001010ee s\CWindows fatal exception: hcode 0xi8001010em erWindows fatal exception: acode 0xX8001010e 1Windows fatal exception: Windows fatal exception: .code 0xcode 0x8001010e3 8001010e\ bWindows fatal exception: icode 0xnWindows fatal exception: 8001010e\ lWindows fatal exception: icode 0xcode 0xb8001010e\8001010es i tWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010eWindows fatal exception: ecode 0x-8001010e p aWindows fatal exception: cWindows fatal exception: kWindows fatal exception: acode 0xgcode 0xe8001010ecode 0xs \8001010eWindows fatal exception: C code 0xh8001010eiWindows fatal exception: code 0xmWindows fatal exception: ecode 0xr8001010ea X8001010e_ m8001010eaWindows fatal exception: icode 0xn8001010e. p Windows fatal exception: ycode 0xWindows fatal exception: "code 0x, line 8001010e867 Windows fatal exception: in Windows fatal exception: 8001010ei ncode 0xi8001010eWindows fatal exception: tcode 0x 8001010e File " Windows fatal exception: Ccode 0x:Windows fatal exception: \code 0xPcode 0xr8001010eo8001010eg 8001010e r aWindows fatal exception: mWindows fatal exception: code 0xcode 0xF8001010e8001010eiWindows fatal exception: lcode 0xe8001010es \Windows fatal exception: Ccode 0xh8001010ei m eWindows fatal exception: rWindows fatal exception: aWindows fatal exception: Xcode 0x code 0xcode 0x8001010e1 .Windows fatal exception: 3Windows fatal exception: \code 0xb8001010ei n8001010e\Windows fatal exception: code 0xcode 0x8001010e8001010e8001010el iWindows fatal exception: bWindows fatal exception: \code 0xs8001010ei Windows fatal exception: tcode 0xe8001010e-Windows fatal exception: p code 0xa8001010ec kWindows fatal exception: Windows fatal exception: acode 0xg8001010ee sWindows fatal exception: \Windows fatal exception: Ccode 0xhcode 0xi8001010emcode 0x e8001010e8001010erWindows fatal exception: acode 0xX8001010e_ code 0xm8001010eWindows fatal exception: a icode 0xn 8001010eWindows fatal exception: . pcode 0xy8001010eWindows fatal exception: "code 0x, line 8001010e1018Windows fatal exception: in code 0x code 0x File Windows fatal exception: "code 0xC8001010e:8001010e\ Pr Windows fatal exception: oWindows fatal exception: gcode 0xr8001010ea mcode 0xWindows fatal exception: code 0xF8001010ei8001010el es \ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_codeWindows fatal exception: code 0x File 8001010e" C:\Windows fatal exception: code 0xP8001010er ogrWindows fatal exception: acode 0xm8001010e FiWindows fatal exception: lcode 0xe8001010es \CWindows fatal exception: hcode 0xi8001010em erWindows fatal exception: acode 0xX8001010e 1.Windows fatal exception: 3code 0x\8001010eb iWindows fatal exception: Windows fatal exception: ncode 0x\8001010el icode 0xWindows fatal exception: bcode 0xWindows fatal exception: 8001010ecode 0x\8001010er u [deleted a lot of this] himWindows fatal exception: eWindows fatal exception: code 0xcode 0xr8001010ea X8001010e Windows fatal exception: 1code 0x.Windows fatal exception: 38001010e\code 0xb 8001010ei nWindows fatal exception: \code 0xWindows fatal exception: 8001010elcode 0x i8001010eb \Windows fatal exception: rcode 0xu8001010en pyWindows fatal exception: .code 0xp8001010ey ", line Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e 87Windows fatal exception: in code 0x_Windows fatal exception: 8001010ercode 0xu8001010en _ codWindows fatal exception: ecode 0x 8001010eWindows fatal exception: code 0x File 8001010e" C:\PWindows fatal exception: rcode 0xo8001010eg ramWindows fatal exception: code 0xF8001010ei leWindows fatal exception: scode 0x\8001010eC hiWindows fatal exception: mcode 0xe8001010er aXWindows fatal exception: code 0x18001010e. 3\Windows fatal exception: bcode 0xi8001010en \lWindows fatal exception: icode 0xb8001010e\ ruWindows fatal exception: Windows fatal exception: code 0xcode 0xn8001010ep 8001010ey Windows fatal exception: .code 0xpWindows fatal exception: 8001010eycode 0x 8001010e"Windows fatal exception: code 0x, line Windows fatal exception: 8001010e197 in Windows fatal exception: _code 0xcode 0xr8001010e8001010e u Windows fatal exception: ncode 0x_8001010em odWindows fatal exception: ucode 0xl8001010ee _aWindows fatal exception: scode 0x_8001010em aiWindows fatal exception: ncode 0x 8001010e Thread 0xWindows fatal exception: 0000330ccode 0x (most recent call first): 8001010e File "CWindows fatal exception: :code 0x\8001010eP roWindows fatal exception: gcode 0xr8001010ea m Windows fatal exception: Fcode 0xi8001010el esWindows fatal exception: \code 0xC8001010eh imWindows fatal exception: ecode 0xr8001010ea X Windows fatal exception: 1code 0x.8001010e3 \bWindows fatal exception: iWindows fatal exception: ncode 0x\8001010ecode 0x 8001010e Windows fatal exception: lcode 0xi8001010eb \sWindows fatal exception: icode 0xWindows fatal exception: t8001010eecode 0x 8001010e-Windows fatal exception: code 0xpWindows fatal exception: 8001010ecode 0x 8001010ea ckagWindows fatal exception: ecode 0xs8001010e\ chiWindows fatal exception: mcode 0xeWindows fatal exception: rcode 0xa8001010ex \o8001010ep eWindows fatal exception: ncode 0xWindows fatal exception: _8001010ecode 0xc8001010eo m mWindows fatal exception: Windows fatal exception: acode 0xncode 0xd8001010e\ Windows fatal exception: dWindows fatal exception: code 0xcode 0xi8001010ea lWindows fatal exception: ocode 0xWindows fatal exception: 8001010ecode 0x g8001010e8001010e 8001010eWindows fatal exception: .code 0x p8001010eWindows fatal exception: ycode 0xWindows fatal exception: 8001010e"code 0xWindows fatal exception: , line 8001010ecode 0x135 in Windows fatal exception: Windows fatal exception: 8001010ecode 0xs 8001010eh code 0xoWindows fatal exception: wcode 0xWindows fatal exception: _8001010e8001010eo pcode 0xWindows fatal exception: ecode 0xn8001010e_ f8001010eWindows fatal exception: i lcode 0xeWindows fatal exception: _8001010ecode 0xd i8001010eaWindows fatal exception: lcode 0xo8001010eWindows fatal exception: gcode 0x 8001010e File "Windows fatal exception: Windows fatal exception: Ccode 0x:8001010e\ Pcode 0xrWindows fatal exception: ocode 0xg8001010er 8001010eaWindows fatal exception: mcode 0x 8001010eF i Windows fatal exception: lcode 0xe8001010es \Windows fatal exception: Windows fatal exception: Ccode 0xh8001010ei mcode 0xeWindows fatal exception: 8001010er code 0xaWindows fatal exception: X8001010e 1.Windows fatal exception: 3code 0x\8001010eb icode 0xn8001010e\ libWindows fatal exception: \Windows fatal exception: scode 0xi8001010et e-Windows fatal exception: pcode 0xcode 0xa8001010e8001010ec kWindows fatal exception: aWindows fatal exception: gcode 0xe8001010es \cWindows fatal exception: code 0xcode 0xh8001010e8001010ei mWindows fatal exception: eWindows fatal exception: code 0xrcode 0xa8001010ex \8001010eo pWindows fatal exception: ecode 0xn8001010e_ coWindows fatal exception: mcode 0xm8001010ea ndWindows fatal exception: \code 0xd8001010ei alWindows fatal exception: ocode 0xg8001010e. pyWindows fatal exception: "code 0x, line 8001010e107 in File "C:Windows fatal exception: \code 0xP8001010er ogWindows fatal exception: rcode 0xa8001010em FWindows fatal exception: icode 0xl8001010ee s\Windows fatal exception: code 0xC8001010eh imeWindows fatal exception: rcode 0xa8001010eX 1Windows fatal exception: .code 0x3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_l8001010eo op Windows fatal exception: File code 0x"8001010eC :\Windows fatal exception: Pcode 0xr8001010eo grWindows fatal exception: acode 0xm8001010e FiWindows fatal exception: lcode 0xe8001010es \CWindows fatal exception: hcode 0xi8001010em eraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x0000330c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\ctypes\__init__.py", line 510 in cast Windows fatal exception: access violation ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:\\\Users\\\mfarrugi\\\Downloads\\\95-5571-endTQ-stripped.pdb Chain information for 95-5571-endTQ-stripped.pdb #1 --- Chain | Description ? | No description available > select 3:428 Expected an objects specifier or a keyword > select :3-428 6423 atoms, 6472 bonds, 426 residues, 1 model selected > hide sel atoms > show sel cartoons > ui tool show "Color Actions" > color sel goldenrod > color sel dark goldenrod > color sel sienna > color sel gold > color sel orange > color sel orange red > color sel orange > color sel dark salmon > color sel light salmon > color sel gold > set bgColor dark gray > set bgColor light gray > set bgColor white > set bgColor light salmon > set bgColor light gray > set bgColor white > color sel light salmon > color sel peru > select :429-804 5629 atoms, 5672 bonds, 376 residues, 1 model selected > color sel teal > color sel dark cyan > color sel teal > hide sel atoms > show sel cartoons > select :1-2,83,267,381,283 237 atoms, 239 bonds, 6 residues, 1 model selected > style sel ball Changed 237 atom styles > show sel atoms > style sel stick Changed 237 atom styles > color sel byelement > select C 3786 atoms, 2903 bonds, 804 residues, 1 model selected > color sel forest green > undo > ui tool show "Color Actions" > color sel green target a > select /?:588 17 atoms, 17 bonds, 1 residue, 1 model selected > select clear > ui mousemode right "rotate selected models" > ui mousemode right "translate selected models" > ui mousemode right "rotate selected models" > ui mousemode right select > select /?:377 19 atoms, 18 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:376 7 atoms, 6 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:378 17 atoms, 16 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:375 15 atoms, 14 bonds, 1 residue, 1 model selected > hide sel cartoons > select clear > hbonds reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 795 hydrogen bonds found > ~hbonds > select :1-2,83,267,381,283 237 atoms, 239 bonds, 6 residues, 1 model selected > hbonds sel reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 39 hydrogen bonds found > ~hbonds > color sel byelement > undo > select ~sel 11985 atoms, 12080 bonds, 798 residues, 1 model selected > hide sel atoms > select clear > undo > select :1-2,83,267,381,283 237 atoms, 239 bonds, 6 residues, 1 model selected > hbonds sel reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 39 hydrogen bonds found > select :1-2,83,267,381,283 237 atoms, 239 bonds, 4 pseudobonds, 6 residues, 2 models selected > ~hbonds > select ~sel 11985 atoms, 12080 bonds, 798 residues, 1 model selected > hide sel cartoons > show sel cartoons > hide sel atoms > select /?:486 19 atoms, 18 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:56 7 atoms, 6 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:385 17 atoms, 17 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:387 24 atoms, 23 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:388 14 atoms, 13 bonds, 1 residue, 1 model selected > hide sel surfaces > hide sel cartoons > select /?:404 10 atoms, 9 bonds, 1 residue, 1 model selected > hide sel cartoons > select /?:405 24 atoms, 23 bonds, 1 residue, 1 model selected > hide sel cartoons > select :1-2,83,267,381,283 237 atoms, 239 bonds, 6 residues, 1 model selected > select ~sel 11985 atoms, 12080 bonds, 798 residues, 1 model selected > hide sel cartoons > hide sel atoms > hide sel surfaces > select /?:2@HT 1 atom, 1 residue, 1 model selected > select /?:2@CDC 1 atom, 1 residue, 1 model selected > select /?:2@HT 1 atom, 1 residue, 1 model selected > select add /?:2@CDC 2 atoms, 1 residue, 1 model selected > hbonds sel reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 0 hydrogen bonds found > hbonds sel reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 0 hydrogen bonds found > select clear > select /?:83@HAB 1 atom, 1 residue, 1 model selected > select /?:2@OAC 1 atom, 1 residue, 1 model selected > hbonds sel reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 0 hydrogen bonds found > select add /?:83@HAB 2 atoms, 2 residues, 1 model selected > hbonds sel reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 0 hydrogen bonds found > select clear > select /?:267@HZ1 1 atom, 1 residue, 1 model selected > select add /?:2@OAC 2 atoms, 2 residues, 1 model selected > hbonds sel reveal true Skipping possible acceptor with bad geometry: /? TS2 2 OAC Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC Skipped 6 atom(s) with bad connectivities; see log for details 0 hydrogen bonds found > select clear > set bgColor black > set bgColor white > save C:/Users/mfarrugi/Documents/HMGR/GS.cxs > save C:/Users/mfarrugi/Documents/HMGR/TS2.cxs > select add /?:2@CDC 1 atom, 1 residue, 1 model selected > select add /?:2@HT 2 atoms, 1 residue, 1 model selected > select add /?:2@CAC 3 atoms, 1 residue, 1 model selected > select subtract /?:2@CAC 2 atoms, 1 residue, 1 model selected > ui mousemode right "link markers" > coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Assigning partial charges to residue TS2 (net charge -1) with am1-bcc method Running ANTECHAMBER command: C:/Program Files/ChimeraX 1.3/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i C:\Users\mfarrugi\AppData\Local\Temp\tmp88lx6z9h\ante.in.mol2 -fi mol2 -o C:\Users\mfarrugi\AppData\Local\Temp\tmp88lx6z9h\ante.out.mol2 -fo mol2 -c bcc -nc -1 -j 5 -s 2 -dr n (TS2) `` (TS2) `Welcome to antechamber 20.0: molecular input file processor.` (TS2) `` (TS2) `Info: Finished reading file (C:\Users\mfarrugi\AppData\Local\Temp\tmp88lx6z9h\ante.in.mol2); atoms read (90), bonds read (93).` (TS2) `Info: Determining atomic numbers from atomic symbols which are case sensitive.` (TS2) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/bondtype" -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac` (TS2) `bash.exe: warning: could not find /tmp, please create!` (TS2) `` (TS2) `` (TS2) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/atomtype" -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff` (TS2) `bash.exe: warning: could not find /tmp, please create!` (TS2) `Info: Total number of electrons: 422; net charge: -1` (TS2) `` (TS2) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out` (TS2) `bash.exe: warning: could not find /tmp, please create!` Failure running ANTECHAMBER for residue TS2 Check reply log for details > ui mousemode right distance > distance /?:2@CDC /?:2@HT Distance between /? TS2 2 CDC and HT: 1.432Å > distance /?:2@OAC /?:83@HAB Distance between /? TS2 2 OAC and ET2 83 HAB: 1.664Å > save C:\Users\mfarrugi\Desktop\image6.png supersample 3 > save C:/Users/mfarrugi/Documents/HMGR/TS2.cxs ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open C:\\\Users\\\mfarrugi\\\Documents\\\HMGR\\\8-2456-endTQ-stripped.pdb Chain information for 8-2456-endTQ-stripped.pdb #1 --- Chain | Description ? | No description available OpenGL version: 3.3.0 NVIDIA 471.41 OpenGL renderer: Quadro P1000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: LENOVO Model: 30DJCTO1WW OS: Microsoft Windows 10 Pro (Build 19042) Memory: 34,051,010,560 MaxProcessMemory: 137,438,953,344 CPU: 16 Intel(R) Core(TM) i7-10700K CPU @ 3.80GHz OSLanguage: en-US Locale: ('en_US', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
Cc: | added |
---|---|
Component: | Unassigned → Platform |
Description: | modified (diff) |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 4 years ago
Resolution: | → can't reproduce |
---|---|
Status: | accepted → closed |
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