Opened 4 years ago
Closed 4 years ago
#6159 closed defect (nonchimerax)
Access denied saving command history
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22000
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> C:\Users\jtlan\Documents\Pymol\Gp8_Structure_Predictions\gp8_prediction_map.ccp4
> format ccp4
Opened gp8_prediction_map.ccp4, grid size 50,38,41, pixel 1.3,1.3,1.3, shown
at level 79.8, step 1, values float32
> open "C:/Users/jtlan/Documents/Kelch
> Lab/CryoEM/CL_SC_23DEC21_CryoSPARC/cryosparc_P1_J49_class_00_final_volume.mrc"
Opened cryosparc_P1_J49_class_00_final_volume.mrc, grid size 128,128,128,
pixel 1.66, shown at level 0.812, step 1, values float32
> close #1
> volume #2 level 0.08832
> volume #2 color #ffffae
> volume #2 color #feffae
> volume #2 color #f8ffb2
> volume #2 color #f0ffb7
> volume #2 color #edffc1
> volume #2 color #edffc2
> volume #2 color #f0ffd2
> volume #2 color #f1ffd5
> volume #2 color #f2ffd8
> volume #2 color #f2ffd9
> volume #2 color #f3ffdc
> volume #2 color #f4ffdd
> volume #2 color #f5ffde
> volume #2 color #f6ffde
> volume #2 color #f7ffe0
> volume #2 color #f8ffe1
> volume #2 color #f9ffe1
> volume #2 color #faffe1
> volume #2 color #fbffe1
> volume #2 color #fcffe1
> volume #2 color #ffffe1
> volume #2 color #fffee1
> volume #2 color #fffde1
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #fff9e0
> volume #2 color #fff8e0
> volume #2 color #fff7e0
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #fff7e1
> volume #2 color #fff7e2
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #fff6e5
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #fef5e4
> volume #2 color #fdf4e4
> volume #2 color #fcf3e3
> volume #2 color #f8efdf
> volume #2 color #f4ebdb
> volume #2 color #efe6d7
> volume #2 color #ece4d4
> volume #2 color #eae2d2
> volume #2 color #e3dbcc
> volume #2 color #ddd5c7
> volume #2 color #d9d1c3
> volume #2 color #d8d0c2
> volume #2 color #d3cbbe
> volume #2 color #d0c9bb
> volume #2 color #c7c0b3
> volume #2 color #b6afa4
> volume #2 color #b3aca1
> volume #2 color #a29c92
> volume #2 color #958f86
> volume #2 color #8a857c
> volume #2 color #7c776f
> volume #2 color #78736c
> volume #2 color #6f6b64
> volume #2 color #6c6861
> volume #2 color #68645d
> volume #2 color #66625b
> volume #2 color #64605a
> volume #2 color #635f59
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #615d57
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #5e5a54
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #5a5651
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #54514b
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #504d48
> volume #2 color #4d4a45
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #4a4742
> volume #2 color #46433f
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #413e3a
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #35332f
> volume #2 color #312f2c
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #2f2d2a
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #2d2b28
> volume #2 color #2c2a27
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #2b2926
> volume #2 color #2c2a27
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #2d2b28
> volume #2 color #32302d
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #383632
> volume #2 color #3e3b37
> volume #2 color #413e3a
> volume #2 color #423f3b
> volume #2 color #484540
> volume #2 color #4b4843
> volume #2 color #4f4c47
> volume #2 color #53504a
> volume #2 color #56534d
> volume #2 color #58554f
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #595650
> volume #2 color #5d5953
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #5f5b55
> volume #2 color #64605a
> volume #2 color #66625b
> volume #2 color #6a665f
> volume #2 color #6c6861
> volume #2 color #6d6962
> volume #2 color #6f6b64
> volume #2 color #706c64
> volume #2 color #716d65
> volume #2 color #736f67
> volume #2 color #757169
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #79746d
> volume #2 color #7c776f
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #7d7870
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #7e7971
> volume #2 color #7f7a72
> volume #2 color #7d7870
> volume #2 color #78736c
> volume #2 color #6f6b64
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #625e58
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #5d5953
> volume #2 color #595650
> volume #2 color #56534d
> volume #2 color #55524c
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #514e49
> volume #2 color #504d48
> volume #2 color #514e49
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #54514b
> volume #2 color #56534d
> volume #2 color #5a5651
> volume #2 color #5d5953
> volume #2 color #615d57
> volume #2 color #625e58
> volume #2 color #635f59
> volume #2 color #64605a
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #66625b
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke
return self._func(self._name, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb
typed=self._just_typed_command is not None)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 401, in add
self._history.enqueue((item, typed))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 171, in enqueue
self.save()
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 201, in save
self._history.save(self._queue)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\history.py", line 109, in save
json.dump(obj, f, ensure_ascii=False)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
Error processing trigger "command started":
PermissionError: [WinError 5] Access is denied:
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' ->
'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands'
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 97, in __exit__
os.replace(self._tmp_filename, self.name)
See log for complete Python traceback.
> volume #2 color #67635c
> volume #2 color #68645d
> volume #2 color #6a665f
OpenGL version: 3.3.0 NVIDIA 472.34
OpenGL renderer: Quadro P500/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: LENOVO
Model: 20LBCTO1WW
OS: Microsoft Windows 11 Pro (Build 22000)
Memory: 17,031,696,384
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-8550U CPU @ 1.80GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
gdcm: 2.8.8
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5+mkl
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pywin32: 228
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Access denied saving command history |
comment:2 by , 4 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | accepted → closed |
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