Opened 4 years ago
Closed 4 years ago
#6159 closed defect (nonchimerax)
Access denied saving command history
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Input/Output | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.22000 ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.1 (2020-09-09) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > C:\Users\jtlan\Documents\Pymol\Gp8_Structure_Predictions\gp8_prediction_map.ccp4 > format ccp4 Opened gp8_prediction_map.ccp4, grid size 50,38,41, pixel 1.3,1.3,1.3, shown at level 79.8, step 1, values float32 > open "C:/Users/jtlan/Documents/Kelch > Lab/CryoEM/CL_SC_23DEC21_CryoSPARC/cryosparc_P1_J49_class_00_final_volume.mrc" Opened cryosparc_P1_J49_class_00_final_volume.mrc, grid size 128,128,128, pixel 1.66, shown at level 0.812, step 1, values float32 > close #1 > volume #2 level 0.08832 > volume #2 color #ffffae > volume #2 color #feffae > volume #2 color #f8ffb2 > volume #2 color #f0ffb7 > volume #2 color #edffc1 > volume #2 color #edffc2 > volume #2 color #f0ffd2 > volume #2 color #f1ffd5 > volume #2 color #f2ffd8 > volume #2 color #f2ffd9 > volume #2 color #f3ffdc > volume #2 color #f4ffdd > volume #2 color #f5ffde > volume #2 color #f6ffde > volume #2 color #f7ffe0 > volume #2 color #f8ffe1 > volume #2 color #f9ffe1 > volume #2 color #faffe1 > volume #2 color #fbffe1 > volume #2 color #fcffe1 > volume #2 color #ffffe1 > volume #2 color #fffee1 > volume #2 color #fffde1 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #fff9e0 > volume #2 color #fff8e0 > volume #2 color #fff7e0 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #fff7e1 > volume #2 color #fff7e2 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #fff6e5 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #fef5e4 > volume #2 color #fdf4e4 > volume #2 color #fcf3e3 > volume #2 color #f8efdf > volume #2 color #f4ebdb > volume #2 color #efe6d7 > volume #2 color #ece4d4 > volume #2 color #eae2d2 > volume #2 color #e3dbcc > volume #2 color #ddd5c7 > volume #2 color #d9d1c3 > volume #2 color #d8d0c2 > volume #2 color #d3cbbe > volume #2 color #d0c9bb > volume #2 color #c7c0b3 > volume #2 color #b6afa4 > volume #2 color #b3aca1 > volume #2 color #a29c92 > volume #2 color #958f86 > volume #2 color #8a857c > volume #2 color #7c776f > volume #2 color #78736c > volume #2 color #6f6b64 > volume #2 color #6c6861 > volume #2 color #68645d > volume #2 color #66625b > volume #2 color #64605a > volume #2 color #635f59 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #615d57 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #5e5a54 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #5a5651 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #54514b Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #504d48 > volume #2 color #4d4a45 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #4a4742 > volume #2 color #46433f Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #413e3a Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #35332f > volume #2 color #312f2c Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #2f2d2a Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #2d2b28 > volume #2 color #2c2a27 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #2b2926 > volume #2 color #2c2a27 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #2d2b28 > volume #2 color #32302d Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #383632 > volume #2 color #3e3b37 > volume #2 color #413e3a > volume #2 color #423f3b > volume #2 color #484540 > volume #2 color #4b4843 > volume #2 color #4f4c47 > volume #2 color #53504a > volume #2 color #56534d > volume #2 color #58554f Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #595650 > volume #2 color #5d5953 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #5f5b55 > volume #2 color #64605a > volume #2 color #66625b > volume #2 color #6a665f > volume #2 color #6c6861 > volume #2 color #6d6962 > volume #2 color #6f6b64 > volume #2 color #706c64 > volume #2 color #716d65 > volume #2 color #736f67 > volume #2 color #757169 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #79746d > volume #2 color #7c776f Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #7d7870 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #7e7971 > volume #2 color #7f7a72 > volume #2 color #7d7870 > volume #2 color #78736c > volume #2 color #6f6b64 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #625e58 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #5d5953 > volume #2 color #595650 > volume #2 color #56534d > volume #2 color #55524c Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #514e49 > volume #2 color #504d48 > volume #2 color #514e49 Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #54514b > volume #2 color #56534d > volume #2 color #5a5651 > volume #2 color #5d5953 > volume #2 color #615d57 > volume #2 color #625e58 > volume #2 color #635f59 > volume #2 color #64605a Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #66625b Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 304, in _command_started_cb typed=self._just_typed_command is not None) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\cmd_line\tool.py", line 401, in add self._history.enqueue((item, typed)) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 171, in enqueue self.save() File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 201, in save self._history.save(self._queue) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\history.py", line 109, in save json.dump(obj, f, ensure_ascii=False) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.tmp' -> 'C:\\\Users\\\jtlan\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\safesave.py", line 97, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. > volume #2 color #67635c > volume #2 color #68645d > volume #2 color #6a665f OpenGL version: 3.3.0 NVIDIA 472.34 OpenGL renderer: Quadro P500/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: LENOVO Model: 20LBCTO1WW OS: Microsoft Windows 11 Pro (Build 22000) Memory: 17,031,696,384 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i7-8550U CPU @ 1.80GHz" PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 gdcm: 2.8.8 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5+mkl numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pywin32: 228 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
Component: | Unassigned → Input/Output |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Access denied saving command history |
comment:2 by , 4 years ago
Resolution: | → nonchimerax |
---|---|
Status: | accepted → closed |
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