Opened 4 years ago
Closed 4 years ago
#6332 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
Reported by: | Owned by: | Eric Pettersen | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Platform | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Windows-10-10.0.19044 ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010e Thread 0x000030ec (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000518c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks File Windows fatal exception: code 0x"8001010eC :\Program Windows fatal exception: Fcode 0xi8001010el es\Windows fatal exception: Ccode 0xh8001010ei merWindows fatal exception: acode 0xX8001010e 1.3Windows fatal exception: \code 0xb8001010ei n\Windows fatal exception: lcode 0xi8001010eb \thWindows fatal exception: rcode 0xe8001010ea dinWindows fatal exception: gcode 0x.8001010ep y", line Windows fatal exception: 910code 0x in 8001010er unWindows fatal exception: code 0x File 8001010e" C:\Windows fatal exception: Pcode 0xr8001010eo gram Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00002c88 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e. 3\biWindows fatal exception: ncode 0x\8001010el ib\Windows fatal exception: tcode 0xh8001010er eadWindows fatal exception: icode 0xn8001010eg .py"Windows fatal exception: , line code 0x9108001010e in runWindows fatal exception: code 0x File 8001010e" C:\Windows fatal exception: Pcode 0xr8001010eo graWindows fatal exception: mcode 0x 8001010eF ileWindows fatal exception: scode 0x\8001010eC himWindows fatal exception: ecode 0xr8001010ea X 1Windows fatal exception: .code 0x38001010e\ bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000484c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003dd4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File Windows fatal exception: "code 0xC8001010e: \PrograWindows fatal exception: mcode 0x 8001010eF iles\ChimWindows fatal exception: ecode 0xr8001010ea X 1Windows fatal exception: .code 0x38001010e\ bin\Windows fatal exception: lcode 0xi8001010eb \threWindows fatal exception: acode 0xd8001010ei ng.pyWindows fatal exception: "code 0x, line 8001010e910 in run Windows fatal exception: File code 0x"8001010eC :\ProWindows fatal exception: gcode 0xr8001010ea m FilWindows fatal exception: ecode 0xs8001010e\ ChimeWindows fatal exception: rcode 0xa8001010eX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00001f30 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003e60 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\ProgramWindows fatal exception: code 0xF8001010ei les\ChiWindows fatal exception: mcode 0xe8001010er aX 1.Windows fatal exception: 3\code 0xb8001010ei n\libWindows fatal exception: \code 0xt8001010eh readiWindows fatal exception: ncode 0xg8001010e. py", line 973Windows fatal exception: in code 0x_8001010eb ootstWindows fatal exception: rcode 0xa8001010ep _inneWindows fatal exception: rcode 0x 8001010e File "C:\PWindows fatal exception: rcode 0xo8001010eg ram FWindows fatal exception: icode 0xl8001010ee s\ChiWindows fatal exception: mcode 0xe8001010er aX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000cb8 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00004244 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\thWindows fatal exception: rcode 0xe8001010ea dingWindows fatal exception: .code 0xp8001010ey ", line 930Windows fatal exception: in code 0x_8001010eb ootWindows fatal exception: scode 0xt8001010er ap Windows fatal exception: code 0xThread 0x8001010e00000da0 (most recent call first): File Windows fatal exception: "code 0xC8001010e: \PWindows fatal exception: rcode 0xo8001010eg ramWindows fatal exception: code 0xF8001010ei leWindows fatal exception: scode 0x\8001010eC himWindows fatal exception: ecode 0xr8001010ea X 1Windows fatal exception: .code 0x38001010e\ bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003ed4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x000040dc (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\opeWindows fatal exception: ncode 0x_8001010ec ommWindows fatal exception: acode 0xn8001010ed \dWindows fatal exception: icode 0xa8001010el ogWindows fatal exception: .code 0xp8001010ey ", line 107 in File "Windows fatal exception: Ccode 0x:8001010e\ ProgWindows fatal exception: rcode 0xa8001010em FileWindows fatal exception: scode 0x\8001010eC himWindows fatal exception: ecode 0xraX8001010e 1.3\bWindows fatal exception: icode 0xn8001010e\ lib\Windows fatal exception: scode 0xi8001010et e-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000030ec (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrWindows fatal exception: acode 0xp8001010e_ inner File Windows fatal exception: "code 0xC8001010e: \ProgWindows fatal exception: rcode 0xa8001010em FileWindows fatal exception: scode 0x\8001010eC himeWindows fatal exception: rcode 0xa8001010eX 1.3\Windows fatal exception: bcode 0xi8001010en \lib\Windows fatal exception: tcode 0xh8001010er eadinWindows fatal exception: gcode 0x.8001010ep y", line 930 in Windows fatal exception: _code 0xb8001010eo otstrWindows fatal exception: acode 0xp8001010e Thread 0x0000518c (most recent call first): File Windows fatal exception: "code 0xC8001010e: \Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00002c88 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.pWindows fatal exception: ycode 0x"8001010e, line 519 in _hWindows fatal exception: acode 0xn8001010ed le_Windows fatal exception: wcode 0xo8001010er keWindows fatal exception: rcode 0xs8001010e File "Windows fatal exception: Ccode 0x:8001010e\ PrWindows fatal exception: ocode 0xg8001010er amWindows fatal exception: code 0xF8001010ei leWindows fatal exception: scode 0x\8001010eC hiWindows fatal exception: mcode 0xe8001010er aXWindows fatal exception: code 0x18001010e. 3\Windows fatal exception: bcode 0xi8001010en \lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000484c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003dd4 (most recent call first): File "C:\ProgramWindows fatal exception: code 0xF8001010ei les\ChiWindows fatal exception: mcode 0xe8001010er aX 1.Windows fatal exception: 3code 0x\8001010eb in\Windows fatal exception: lcode 0xi8001010eb \mWindows fatal exception: ucode 0xl8001010et ipWindows fatal exception: rcode 0xo8001010ec esWindows fatal exception: scode 0xi8001010en g\Windows fatal exception: pcode 0xo8001010eo l.pWindows fatal exception: ycode 0x"8001010e, line 114 in wWindows fatal exception: ocode 0xr8001010ek er File Windows fatal exception: "code 0xC8001010e: \Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00001f30 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003e60 (most recent call first): File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e. 3\biWindows fatal exception: ncode 0x\8001010el ib\Windows fatal exception: mcode 0xu8001010el tiWindows fatal exception: pcode 0xr8001010eo ceWindows fatal exception: scode 0xs8001010ei ngWindows fatal exception: \code 0xp8001010eo olWindows fatal exception: .code 0xp8001010ey ", line Windows fatal exception: 114code 0x in 8001010ew orWindows fatal exception: kcode 0xe8001010er File Windows fatal exception: "code 0xC8001010e: \PWindows fatal exception: rcode 0xo8001010eg ram Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000cb8 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00004244 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000da0 (most recent call first): File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e. 3\binWindows fatal exception: \code 0xl8001010ei b\mWindows fatal exception: ucode 0xl8001010et ipWindows fatal exception: rcode 0xo8001010ec esWindows fatal exception: scode 0xi8001010en g\Windows fatal exception: pcode 0xo8001010eo l.Windows fatal exception: pcode 0xy8001010e" , line 114 in Windows fatal exception: wcode 0xo8001010er keWindows fatal exception: rcode 0x 8001010e File "CWindows fatal exception: :code 0x\8001010eP roWindows fatal exception: gcode 0xr8001010ea m Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003ed4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x000040dc (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000030ec (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000518c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00002c88 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap [deleted a bunch of this] Thread 0x0000518c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00002c88 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait File "C:\Program Files\ChimeraX 1.3Windows fatal exception: \code 0xb8001010ei n\liWindows fatal exception: bcode 0x\8001010em ulWindows fatal exception: tcode 0xi8001010ep roWindows fatal exception: ccode 0xe8001010es siWindows fatal exception: ncode 0xg8001010e\ poWindows fatal exception: ocode 0xl8001010e. pyWindows fatal exception: "code 0x, line 8001010e499 in _Windows fatal exception: wcode 0xa8001010ei t_Windows fatal exception: fcode 0xo8001010er _upWindows fatal exception: dcode 0xa8001010et esWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threadinWindows fatal exception: gcode 0x.8001010ep y", line 930 in _bWindows fatal exception: ocode 0xot8001010es trap Windows fatal exception: code 0xThread 0x8001010e0000484c (most recent call first): File "C:Windows fatal exception: \code 0xP8001010er ogramWindows fatal exception: code 0xF8001010ei les\ChWindows fatal exception: icode 0xm8001010ee raX 1Windows fatal exception: .code 0x38001010e\ bin\Windows fatal exception: lcode 0xi8001010eb \muWindows fatal exception: lcode 0xt8001010ei procWindows fatal exception: ecode 0xs8001010es ing\pWindows fatal exception: ocode 0xo8001010el .py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003dd4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in workerWindows fatal exception: code 0x File 8001010e" C:\ProWindows fatal exception: gcode 0xr8001010ea m FilWindows fatal exception: ecode 0xs8001010e\ ChimeWindows fatal exception: rcode 0xa8001010eX 1.3\Windows fatal exception: bcode 0xi8001010en \libWindows fatal exception: \code 0xt8001010eh readiWindows fatal exception: ncode 0xg8001010e. py", line Windows fatal exception: 910code 0x in 8001010er un File Windows fatal exception: "code 0xC8001010e: \PrWindows fatal exception: ocode 0xg8001010er am Windows fatal exception: Fcode 0xi8001010el es\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00001f30 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003e60 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000cb8 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00004244 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000da0 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003ed4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x000040dc (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000030ec (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000518c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks File "C:\Program Files\ChimeraX 1.3\bin\lib\threadingWindows fatal exception: .code 0xp8001010ey ", line 910 in ruWindows fatal exception: ncode 0x 8001010e File "C:Windows fatal exception: \code 0xP8001010er ogrWindows fatal exception: acode 0xm8001010e FiWindows fatal exception: lcode 0xe8001010es \CWindows fatal exception: hcode 0xi8001010em erWindows fatal exception: acode 0xX8001010e 1.3Windows fatal exception: \code 0xb8001010ei n\Windows fatal exception: lcode 0xi8001010eb \tWindows fatal exception: hcode 0xr8001010ee adWindows fatal exception: icode 0xn8001010eg .py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00002c88 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\Windows fatal exception: lcode 0xi8001010eb \mulWindows fatal exception: tcode 0xi8001010ep rocWindows fatal exception: ecode 0xs8001010es inWindows fatal exception: gcode 0x\8001010ec onWindows fatal exception: ncode 0xe8001010ec tiWindows fatal exception: ocode 0xn8001010e. pyWindows fatal exception: "code 0x, line 8001010e816 in _Windows fatal exception: ecode 0xx8001010eh auWindows fatal exception: scode 0xt8001010ei veWindows fatal exception: _code 0xw8001010ea it Windows fatal exception: File code 0x"8001010eC :\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_worWindows fatal exception: kcode 0xe8001010er s File "C:Windows fatal exception: \code 0xP8001010er ograWindows fatal exception: mcode 0x 8001010eF ilesWindows fatal exception: \code 0xC8001010eh imerWindows fatal exception: acode 0xX8001010e 1.3\bWindows fatal exception: icode 0xn8001010e\ lib\tWindows fatal exception: hcode 0xr8001010ee adingWindows fatal exception: .code 0xp8001010ey", line 910 in run Windows fatal exception: File code 0x"8001010eC :\ProWindows fatal exception: gcode 0xr8001010ea Windows fatal exception: code 0xWindows fatal exception: 8001010em code 0xFWindows fatal exception: i8001010ecode 0xl8001010ee sWindows fatal exception: \code 0xC hi8001010em eraWindows fatal exception: Xcode 0x 8001010e1 .3Windows fatal exception: \code 0xb8001010ei n\Windows fatal exception: lcode 0xi8001010eb \tWindows fatal exception: hcode 0xr8001010ee adWindows fatal exception: icode 0xn8001010eg .pWindows fatal exception: ycode 0x"8001010e, line 973 in Windows fatal exception: _code 0xb8001010eo otWindows fatal exception: scode 0xt8001010er ap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000484c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChiWindows fatal exception: mcode 0xe8001010er aX 1Windows fatal exception: code 0x8001010e. 3\bWindows fatal exception: icode 0xn8001010e\ lib\tWindows fatal exception: hcode 0xr8001010ee adinWindows fatal exception: gcode 0x.8001010ep y", line 910Windows fatal exception: in code 0xr8001010eu n File "Windows fatal exception: Ccode 0x:8001010e\ ProgrWindows fatal exception: acode 0xm8001010e FilesWindows fatal exception: \code 0xC8001010eh imerWindows fatal exception: acode 0xX8001010e 1.3\Windows fatal exception: bcode 0xi8001010enWindows fatal exception: \ code 0xl8001010ei b\thWindows fatal exception: rcode 0xe8001010ea diWindows fatal exception: ncode 0xg8001010e. pyWindows fatal exception: "code 0x, line 8001010e973 in _Windows fatal exception: bcode 0xo8001010eo tsWindows fatal exception: tcode 0xr8001010ea p_Windows fatal exception: icode 0xn8001010en erWindows fatal exception: code 0x File 8001010e" C:Windows fatal exception: \code 0xP8001010er ogWindows fatal exception: rcode 0xa8001010em FWindows fatal exception: icode 0xl8001010ee s\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003dd4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessWindows fatal exception: icode 0xn8001010eg \pooWindows fatal exception: lcode 0x.8001010ep y"Windows fatal exception: , line code 0x1148001010e in woWindows fatal exception: rcode 0xk8001010ee r Windows fatal exception: File code 0x"8001010eC :\Windows fatal exception: Pcode 0xr8001010eo grWindows fatal exception: acode 0xm8001010e FiWindows fatal exception: lcode 0xe8001010es \CWindows fatal exception: hcode 0xi8001010em erWindows fatal exception: acode 0xX8001010e 1.Windows fatal exception: 3code 0x\8001010eb in\lib\threading.py", line 910 in run File "C:\Program FiWindows fatal exception: lcode 0xe8001010es \ChiWindows fatal exception: mcode 0xe8001010er aXWindows fatal exception: code 0x18001010e. 3\Windows fatal exception: bcode 0xi8001010en \lWindows fatal exception: icode 0xb8001010e\ thWindows fatal exception: rcode 0xe8001010ea diWindows fatal exception: ncode 0xg8001010e. pyWindows fatal exception: "code 0x, line 8001010e973 in _Windows fatal exception: bcode 0xo8001010eo tsWindows fatal exception: tcode 0xr8001010ea p_Windows fatal exception: icode 0xn8001010en er File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.pWindows fatal exception: ycode 0x"8001010e, line 930 in _Windows fatal exception: bcode 0xo8001010eo tstWindows fatal exception: rcode 0xa8001010ep Windows fatal exception: Thread 0xcode 0x00001f308001010e (most recent call first): File "C:Windows fatal exception: \code 0xP8001010er ogWindows fatal exception: rcode 0xa8001010em FWindows fatal exception: icode 0xl8001010ee s\Windows fatal exception: Ccode 0xh8001010ei meWindows fatal exception: rcode 0xa8001010eX 1Windows fatal exception: .code 0x38001010e\ biWindows fatal exception: ncode 0x\8001010el ib\multiprocessing\pool.py", line 114 in worker File "C:\ProgrWindows fatal exception: acode 0xm8001010e FileWindows fatal exception: scode 0x\8001010e ChWindows fatal exception: icode 0xm8001010ee raWindows fatal exception: Xcode 0x 8001010e1 .3Windows fatal exception: \code 0xb8001010ei n\Windows fatal exception: lcode 0xi8001010eb \tWindows fatal exception: hcode 0xr8001010ee adWindows fatal exception: icode 0xn8001010eg .pWindows fatal exception: ycode 0x"8001010e, line 910 in Windows fatal exception: rcode 0xu8001010en File Windows fatal exception: "code 0xC8001010e: \Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973Windows fatal exception: in code 0x_8001010eb ootWindows fatal exception: scode 0xt8001010er apWindows fatal exception: _code 0xi8001010en neWindows fatal exception: rcode 0x 8001010e File "CWindows fatal exception: :code 0x\8001010eP roWindows fatal exception: gcode 0xr8001010ea m FilWindows fatal exception: ecode 0xs8001010e\ ChimWindows fatal exception: ecode 0xr8001010ea X 1.Windows fatal exception: 3code 0x\8001010eb inWindows fatal exception: \code 0xl8001010ei b\Windows fatal exception: tcode 0xh8001010er eading.py", line 930 in _bootstrap Thread 0x00003e60 (most recent call first): File "C:\PrWindows fatal exception: ocode 0xg8001010er am FWindows fatal exception: icode 0xl8001010ee s\CWindows fatal exception: hcode 0xi8001010em eraWindows fatal exception: Xcode 0x 8001010e1 .3\Windows fatal exception: bcode 0xi8001010en \liWindows fatal exception: bcode 0x\8001010em ultWindows fatal exception: icode 0xp8001010er oceWindows fatal exception: scode 0xs8001010ei ngWindows fatal exception: \code 0xp8001010eo olWindows fatal exception: .code 0xp8001010ey ", line Windows fatal exception: 114code 0x in 8001010ew orker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program FiWindows fatal exception: lcode 0xe8001010es \ChWindows fatal exception: icode 0xm8001010ee raWindows fatal exception: Xcode 0x 8001010e1 .3Windows fatal exception: \code 0xb8001010ei n\liWindows fatal exception: bcode 0x\8001010et hrWindows fatal exception: ecode 0xa8001010ed inWindows fatal exception: gcode 0x.8001010ep y"Windows fatal exception: , line code 0x9738001010e in _bWindows fatal exception: ocode 0xo8001010et stWindows fatal exception: rcode 0xa8001010ep _iWindows fatal exception: ncode 0xn8001010ee r File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000cb8 (most recent call first): Windows fatal exception: File code 0x"8001010eC :\PrWindows fatal exception: ocode 0xg8001010er amWindows fatal exception: code 0xF8001010ei leWindows fatal exception: scode 0x\8001010eC hiWindows fatal exception: mcode 0xe8001010er aXWindows fatal exception: code 0x18001010e. 3\Windows fatal exception: bcode 0xi8001010en \lWindows fatal exception: icode 0xb8001010e\ muWindows fatal exception: lcode 0xt8001010ei prWindows fatal exception: ocode 0xc8001010ee ssWindows fatal exception: icode 0xn8001010eg \pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in rWindows fatal exception: ucode 0xn8001010e File "C:Windows fatal exception: \code 0xP8001010er ogWindows fatal exception: rcode 0xa8001010em FiWindows fatal exception: lcode 0xe8001010es \CWindows fatal exception: hcode 0xi8001010em erWindows fatal exception: acode 0xX8001010e 1.Windows fatal exception: 3code 0x\8001010eb inWindows fatal exception: \code 0xl8001010ei b\Windows fatal exception: tcode 0xh8001010er eaWindows fatal exception: dcode 0xi8001010en g.Windows fatal exception: pcode 0xy8001010e" , line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00004244 (most recent call first): File "C:\Program Files\CWindows fatal exception: hcode 0xi8001010em eraXWindows fatal exception: code 0x18001010e. 3\Windows fatal exception: bcode 0xi8001010en \lWindows fatal exception: icode 0xb8001010e\ muWindows fatal exception: lcode 0xt8001010ei prWindows fatal exception: ocode 0xc8001010ee ssWindows fatal exception: icode 0xn8001010eg \pWindows fatal exception: ocode 0xo8001010el .pWindows fatal exception: ycode 0x"8001010e, line 114 in Windows fatal exception: wcode 0xo8001010er keWindows fatal exception: rcode 0x 8001010e File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000da0 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003ed4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x000040dc (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000030ec (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 576 in _handle_results File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000518c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00002c88 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\connection.py", line 884 in wait File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x0000484c (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003dd4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00001f30 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003e60 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000cb8 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00004244 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00000da0 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x00003ed4 (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\multiprocessing\pool.py", line 114 in worker File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 910 in run File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 973 in _bootstrap_inner File "C:\Program Files\ChimeraX 1.3\bin\lib\threading.py", line 930 in _bootstrap Thread 0x000040dc (most recent call first): File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\clipping.py", line 46 in _set_changed Windows fatal exception: access violation ===== Log before crash start ===== UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "C:\Users\twm78\Documents\Honey Bee GSTs\amgstd1-cdnb.pdb" format pdb Summary of feedback from opening C:\Users\twm78\Documents\Honey Bee GSTs\amgstd1-cdnb.pdb --- warnings | Start residue of secondary structure not found: HELIX 1 1 PRO A 35 ALA A 46 1 12 Start residue of secondary structure not found: HELIX 2 2 LEU A 58 ASN A 60 1 3 Start residue of secondary structure not found: HELIX 3 3 GLU A 62 LEU A 64 1 3 Start residue of secondary structure not found: HELIX 4 4 PRO A 66 ILE A 71 1 6 Start residue of secondary structure not found: HELIX 5 5 SER A 90 TYR A 101 1 12 12 messages similar to the above omitted Chain information for amgstd1-cdnb.pdb --- Chain | Description 1.1/A | No description available > close session > open "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/5.cxs" Opened AmgstD1_refine_31_2mFo-DFc.ccp4 as #2, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 Opened AmgstD1_refine_31_2mFo-DFc.ccp4 copy as #4, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 opened ChimeraX session > select clear > volume #4 color #0000ff33 > volume #4 step 2 > volume #4 step 1 > hide #!4 models > show #!4 models > hide #1 models > show #1 models > ui tool show "Volume Viewer" > volume #4 style image showOutlineBox true imageMode "tilted slab" > tiltedSlabAxis -0.9394,0.3031,-0.1602 tiltedSlabOffset -30.47 > tiltedSlabSpacing 0.3581 tiltedSlabPlaneCount 32 > volume #4 colorMode opaque8 imageMode "box faces" > volume #4 orthoplanes xyz positionPlanes 79,79,323 imageMode orthoplanes > volume #4 maximumIntensityProjection true colorMode auto8 imageMode "full > region" > volume #4 maximumIntensityProjection false > volume #4 style mesh > color #4 blue models transparency 0 > color #4 #0055ff models transparency 0 > color #4 blue models transparency 0 > hide #!4 models > show #!4 models > volume #4 step 2 > volume #4 step 1 > close session > open "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/5.cxs" Opened AmgstD1_refine_31_2mFo-DFc.ccp4 as #2, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 Opened AmgstD1_refine_31_2mFo-DFc.ccp4 copy as #4, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 opened ChimeraX session > volume #4 color #0000ff33 > volume #4 style surface > volume #4 level 1.1 > .arrow x1 y1 z1 x2 y2 z2 [r1 [r2 [rho]]] Unknown command: .arrow x1 y1 z1 x2 y2 z2 [r1 [r2 [rho]]] > hide #!4 models > show #!4 models > volume #4 style mesh > volume #!4 style mesh > volume #!4 style surface > volume #!4 style mesh > transparency #4.1 0 > volume #!4 style mesh > vop gaussian #4 sdev 1.13 Opened AmgstD1_refine_31_2mFo-DFc.ccp4 copy gaussian as #3, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at step 1, values float32 > undo > close session > open "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/5.cxs" Opened AmgstD1_refine_31_2mFo-DFc.ccp4 as #2, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 Opened AmgstD1_refine_31_2mFo-DFc.ccp4 copy as #4, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 opened ChimeraX session > volume #!4 style image > volume #!4 style mesh > transparency #4.1 0 > transparency #4.1 50 > volume #4 color #0000ff80 > hide #1 models > volume #!4 style surface > volume #!4 style mesh > volume #!4 style image > volume #!4 style mesh > transparency #4.1 0 > volume #!4 showOutlineBox true > volume #!4 showOutlineBox false > volume show > volume hide > surface dust #4 size 3.76 > close session > open "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/5.cxs" Opened AmgstD1_refine_31_2mFo-DFc.ccp4 as #2, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 Opened AmgstD1_refine_31_2mFo-DFc.ccp4 copy as #4, grid size 160,160,648, pixel 0.376,0.376,0.358, shown at level 1.2, step 1, values float32 opened ChimeraX session > volume #!4 style mesh > volume #!4 style image > volume #!4 style mesh > transparency #4.1 0 > volume #!4 style mesh > transparency #4.1 50 > volume #4 color #0000ff80 > volume #4 color #0055ff80 > volume #4 color #0000ff80 > volume #4 color #0000e380 > volume #4 color #06a8e380 > volume #4 color #0570e380 > volume #4 color #067eff80 > volume #4 color #013cff80 > volume #4 color #0162ff80 > volume #4 color #0184ff80 > volume #2 level 1.5 > volume #4 level 1.5 > hide #1 models > transparency #4.1#!4 50 > select #4 3 models selected > transparency #4.1 50 > select #4 3 models selected > select #4 3 models selected > select #4 3 models selected > select clear > volume #4 color #0055ff80 > volume #4 color #2a58ff80 > transparency #4.1 0 > transparency #4.1#!4 50 > transparency #4.1#!4 90 > show #1 models > transparency #1#4.1#!4 50 > transparency_depth (float) Unknown command: transparency_depth (float) > transparency_depth (0.5) Unknown command: transparency_depth (0.5) > select #4 3 models selected > transparency_depth (0.5) Unknown command: transparency_depth (0.5) > select clear > volume #!4 style surface > select #4 3 models selected > transparency #4.1 50 > transparency #4.1 80 > close #2 > volume #4 style mesh > transparency_depth (0) Unknown command: transparency_depth (0) > select clear > ui tool show "Show Volume Menu" > select #4 3 models selected > volume sel style surface > volume #4 region 0,0,0,159,159,647 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density.tif" width 1341 height 834 supersample 4 transparentBackground > true > select clear > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density.tif" width 1341 height 834 supersample 3 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density.tif" width 1341 height 834 supersample 4 transparentBackground > true > surface style mesh > volume #4 region 0,0,0,159,159,647 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-mesh.tif" width 1341 height 834 supersample 4 > transparentBackground true > transparency #1#4.1#!4 50 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-mesh.tif" width 1341 height 834 supersample 4 > transparentBackground true > transparency #1#4.1#!4 0 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-mesh.tif" width 1341 height 834 supersample 4 > transparentBackground true > volume style surface > transparency #1#4.1#!4 50 > transparency #1#4.1#!4 80 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface50.tif" width 1341 height 834 supersample 4 > transparentBackground true > transparency #1#4.1#!4 20 > transparency #1#4.1#!4 30 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface30.tif" width 1341 height 834 supersample 4 > transparentBackground true > transparency #1#4.1#!4 40 > color #4 #00aaff33 models > color #4 #55aaff33 models > color #4 #29537c33 models > color #4 #55aaff33 models > color #4 #5555ff33 models > color #4 #0055ff33 models > color #4 #0000ff33 models > color #4 #0055ff33 models > transparency #1#4.1#!4 40 > transparency #1#4.1#!4 30 > color #4 #00aaff33 models > color #4 #00ffff33 models > color #4 #0055ff33 models > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface0000.tif" width 1341 height 834 supersample 4 > transparentBackground true > transparency #1#4.1#!4 20 > transparency #1#4.1#!4 40 > transparency #1#4.1#!4 70 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface80.tif" width 1341 height 834 supersample 3 > transparency #1#4.1#!4 50 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface50.tif" width 1341 height 834 supersample 3 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface50.tif" width 1341 height 834 supersample 4 > transparentBackground true > transparency #1#4.1#!4 40 > transparency #1#4.1#!4 60 > transparency #1#4.1#!4 70 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface70.tif" width 1341 height 834 supersample 3 > save "C:/Users/twm78/Documents/Honey Bee GSTs/Chimera/AmGSTD1monomer with > GSH density-surface70.tif" width 1341 height 834 supersample 4 > transparentBackground true > ui tool show "Show Sequence Viewer" > sequence chain /A Alignment identifier is 1/A > select /A:27 12 atoms, 11 bonds, 1 residue, 1 model selected > select /A:27-30 70 atoms, 71 bonds, 4 residues, 1 model selected > select /A:51-52 31 atoms, 30 bonds, 2 residues, 1 model selected > select /A:52-55 73 atoms, 73 bonds, 4 residues, 1 model selected > select /A:27-30,52-55,79-82,85-87 263 atoms, 263 bonds, 15 residues, 1 model selected > select /A:79 14 atoms, 13 bonds, 1 residue, 1 model selected > select /A:79-82 57 atoms, 56 bonds, 4 residues, 1 model selected > select /A:35 14 atoms, 14 bonds, 1 residue, 1 model selected > select /A:35-46 162 atoms, 163 bonds, 12 residues, 1 model selected > select /A:58-59 36 atoms, 35 bonds, 2 residues, 1 model selected > select /A:58-71 239 atoms, 241 bonds, 14 residues, 1 model selected > select > /A:35-46,58-60,62-64,66-71,90-101,112-142,149-165,179-193,202-214,218-232 2097 atoms, 2113 bonds, 127 residues, 1 model selected > select /A:90 11 atoms, 10 bonds, 1 residue, 1 model selected > select /A:90-101 195 atoms, 196 bonds, 12 residues, 1 model selected > select > /A:35-46,58-60,62-64,66-71,90-101,112-142,149-165,179-193,202-214,218-232 2097 atoms, 2113 bonds, 127 residues, 1 model selected > select /A:112 19 atoms, 18 bonds, 1 residue, 1 model selected > select /A:112-122 206 atoms, 205 bonds, 11 residues, 1 model selected > select /A:112 19 atoms, 18 bonds, 1 residue, 1 model selected > select /A:112-142 555 atoms, 563 bonds, 31 residues, 1 model selected > select /A:148-149 29 atoms, 28 bonds, 2 residues, 1 model selected > select /A:149-165 272 atoms, 274 bonds, 17 residues, 1 model selected > select /A:179 19 atoms, 18 bonds, 1 residue, 1 model selected > select /A:179-193 216 atoms, 215 bonds, 15 residues, 1 model selected > select /A:202 22 atoms, 21 bonds, 1 residue, 1 model selected > select /A:202-214 236 atoms, 239 bonds, 13 residues, 1 model selected > select > /A:35-46,58-60,62-64,66-71,90-101,112-142,149-165,179-193,202-214,218-232 2097 atoms, 2113 bonds, 127 residues, 1 model selected > select /A:218 21 atoms, 21 bonds, 1 residue, 1 model selected > select /A:218-233 267 atoms, 269 bonds, 16 residues, 1 model selected > save "C:/Users/twm78/Documents/Honey Bee > GSTs/Chimera/AmGSTD1-mapforsigmadeltaposter-03082022.cxs" > close session ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.3 (2021-12-08) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 NVIDIA 472.12 OpenGL renderer: NVIDIA GeForce GT 740/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: ASUS Model: All Series OS: Microsoft Windows 10 Education (Build 19044) Memory: 34,301,300,736 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i7-4790 CPU @ 3.60GHz OSLanguage: en-US Locale: ('en_US', 'cp1252') PyQt5 5.15.2, Qt 5.15.2 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.9.1 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2021.10.8 cftime: 1.5.1.1 charset-normalizer: 2.0.9 ChimeraX-AddCharge: 1.2.2 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.2.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.31 ChimeraX-AtomicLibrary: 4.2 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.0 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.6.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.2 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5 ChimeraX-CommandLine: 1.1.5 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.3 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1.5 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.4 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.4 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.4 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.2.6 ChimeraX-ModelPanel: 1.2.1 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.7 ChimeraX-PDB: 2.6.5 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.4.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.6.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1 ChimeraX-ToolshedUtils: 1.2 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.13.7 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.0.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 comtypes: 1.1.10 cxservices: 1.1 cycler: 0.11.0 Cython: 0.29.24 decorator: 5.1.0 docutils: 0.17.1 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 3.6.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.21 imagecodecs: 2021.4.28 imagesize: 1.3.0 ipykernel: 5.5.5 ipython: 7.23.1 ipython-genutils: 0.2.0 jedi: 0.18.0 Jinja2: 3.0.1 jupyter-client: 6.1.12 jupyter-core: 4.9.1 kiwisolver: 1.3.2 lxml: 4.6.3 lz4: 3.1.3 MarkupSafe: 2.0.1 matplotlib: 3.4.3 matplotlib-inline: 0.1.3 msgpack: 1.0.2 netCDF4: 1.5.7 networkx: 2.6.3 numexpr: 2.8.0 numpy: 1.21.2 openvr: 1.16.801 packaging: 21.3 ParmEd: 3.2.0 parso: 0.8.3 pickleshare: 0.7.5 Pillow: 8.3.2 pip: 21.2.4 pkginfo: 1.7.1 prompt-toolkit: 3.0.23 psutil: 5.8.0 pycollada: 0.7.1 pydicom: 2.1.2 Pygments: 2.10.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.6 PyQt5-commercial: 5.15.2 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.2 python-dateutil: 2.8.2 pytz: 2021.3 pywin32: 228 pyzmq: 22.3.0 qtconsole: 5.1.1 QtPy: 1.11.3 RandomWords: 0.3.0 requests: 2.26.0 scipy: 1.7.1 setuptools: 57.5.0 sfftk-rw: 0.7.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.2.0 sphinx-autodoc-typehints: 1.12.0 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2021.4.8 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.7 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.0 wheel-filename: 1.3.0 WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
Cc: | added |
---|---|
Component: | Unassigned → Platform |
Description: | modified (diff) |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 4 years ago
Resolution: | → can't reproduce |
---|---|
Status: | accepted → closed |
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