Crash drawing side view

[elzbieta.wator@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.3.dev202110231141 (2021-10-23 11:41:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Thread 0x00006adc (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\threading.py", line 316 in wait
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\threading.py", line 574 in wait
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\threading.py", line 1284 in run
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\threading.py", line 973 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\threading.py", line 930 in _bootstrap

Current thread 0x00006f70 (most recent call first):
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\chimerax\graphics\opengl.py", line 235 in swap_buffers
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\chimerax\graphics\opengl.py", line 496 in swap_buffers
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\chimerax\graphics\view.py", line 179 in draw
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\chimerax\sideview\tool.py", line 276 in render
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\chimerax\sideview\tool.py", line 116 in exposeEvent
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\chimerax\ui\gui.py", line 316 in event_loop
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\runpy.py", line 87 in _run_code
  File "C:\Program Files\ChimeraX 1.3.dev202110231141\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.3.dev202110231141 (2021-10-23)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:/DHS_complex.pdb D:/ELF_complex.pdb

Chain information for DHS_complex.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for ELF_complex.pdb #2  
---  
Chain | Description  
E | No description available  
  

> hide #!1 target m

> close #1

> close

> open D:/COMPLEX_FINAL_MODEL.pdb

Chain information for COMPLEX_FINAL_MODEL.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
  

> open D:/J147_inverted_finalmap.mrc

Opened J147_inverted_finalmap.mrc as #2, grid size 256,256,256, pixel 0.86,
shown at level 0.106, step 1, values float32  

> hide #!2 models

> colour #1/B #efd264

> colour #1/C #a1ba9a

> colour #1/D #c0bcb6

> colour #1/A #8dabcc

> colour #1/E #ad7b93

> surface dust #4

No surfaces specified  

> vop #4 rmslevel 3.5

No volumes specified  

> surface dust #4 size 12

No surfaces specified  

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting gentle

> show cartoons

> style stick

Changed 12026 atom styles  

> show cartoons

> set bgColor white

> hide atoms

> lighting full

> lighting soft

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting simple

> lighting soft

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting shadows false

> lighting soft

> lighting simple

> lighting soft

> graphics silhouettes true

> close #1

> open D:/DHS_complex.pdb

Chain information for DHS_complex.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> open C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_modified.cif

Summary of feedback from opening
C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_modified.cif  
---  
warnings | Skipping chem_comp category: Missing column 'type' near line 11  
Missing entity information. Treating each chain as a separate entity.  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
Skipping chem_comp category: Missing column 'type' near line 11571  
  
Chain information for DHS_complex_modified.cif #3  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> hide #!3 models

> close #2

> close #1

> open C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_new.cif

Summary of feedback from opening
C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_new.cif  
---  
warnings | Missing entity information. Treating each chain as a separate
entity.  
Unable to fetch template for 'CSS': might have incorrect bonds  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for DHS_complex_new.cif #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> close #1

> show #!3 models

> open C:/Users/Admin/Desktop/obrazki_complex/DHS.cif

Summary of feedback from opening
C:/Users/Admin/Desktop/obrazki_complex/DHS.cif  
---  
warnings | Missing entity information. Treating each chain as a separate
entity.  
Unable to fetch template for 'CSS': might have incorrect bonds  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for DHS.cif #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> close

> open C:\Users\Admin\Desktop\obrazki_complex\DHS_complex_new.cif format mmcif

Summary of feedback from opening
C:\Users\Admin\Desktop\obrazki_complex\DHS_complex_new.cif  
---  
warnings | Missing entity information. Treating each chain as a separate
entity.  
Unable to fetch template for 'CSS': might have incorrect bonds  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for DHS_complex_new.cif #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> close

> open C:/Users/Admin/Desktop/obrazki_complex/DHS_complex.pdb
> C:/Users/Admin/Desktop/obrazki_complex/ELF_complex.pdb

Chain information for DHS_complex.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for ELF_complex.pdb #2  
---  
Chain | Description  
E | No description available  
  

> close

> open D:/J147_inverted_finalmap.mrc

Opened J147_inverted_finalmap.mrc as #1, grid size 256,256,256, pixel 0.86,
shown at level 0.106, step 1, values float32  

> open D:/COMPLEX_FINAL_MODEL.pdb

Chain information for COMPLEX_FINAL_MODEL.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
  

> colour #1/B #efd264

> colour #1/C #a1ba9a

> colour #1/D #c0bcb6

> colour #1/A #8dabcc

> colour #1/E #ad7b93

> lighting gentle

> surface dust #4

No surfaces specified  

> vop #4 rmslevel 3.5

No volumes specified  

> surface dust #4 size 12

No surfaces specified  

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting gentle

> surface dust #4

No surfaces specified  

> vop #1 rmslevel 3.5

> surface dust #1 size 12

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting gentle

> hide #!2 models

> show #!2 models

> hide #!1 models

> colour #2/B #efd264

> colour #2/C #a1ba9a

> colour #2/D #c0bcb6

> colour #2/A #8dabcc

> colour #2/E #ad7b93

> hide atoms

> show cartoons

> lighting soft

> lighting simple

> lighting full

> lighting simple

> lighting soft

> lighting simple

> open C:/Users/Admin/Downloads/6xxj.pdb

6xxj.pdb title:  
Crystal structure of human deoxyhypusine synthase In complex with spermidine
and nad [more info...]  
  
Chain information for 6xxj.pdb #3  
---  
Chain | Description | UniProt  
A | DHS | DHYS_HUMAN  
B | DHS | DHYS_HUMAN  
  

> hide #3 models

> show #3 models

> hide #!2 models

> show #!2 models

> color #2 #ccb06a

> colour #2/E #ad7b93

> colour #2/B #efd264

> colour #2/C #a1ba9a

> colour #2/D #c0bcb6

> colour #2/A #8dabcc

> hide #3 models

> select E/45-55

Expected an objects specifier or a keyword  

> select #2 E/45-55

Expected a keyword  

> select #2/E:45-55

80 atoms, 81 bonds, 11 residues, 1 model selected  

> show #!1 models

> volume zone #1 nearAtoms sel & #2 range 5.16

> surface dust #1 size 8.6

> volume zone #1 nearAtoms sel & #2 range 5.16

> volume zone #1 nearAtoms sel & #2 range 5

> volume #1 style mesh

> show sel atoms

> style sel stick

Changed 80 atom styles  

> volume zone #1 nearAtoms sel & #2 range 3

> volume zone #1 nearAtoms sel & #2 range 2.5

> mmaker #3/A,B on_model #2/A,B

> matchmaker #3/A,B on_model #2/A,B

Expected a keyword  

> mmaker #3/A,B to #2/A,B

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker COMPLEX_FINAL_MODEL.pdb, chain A (#2) with 6xxj.pdb, chain A (#3),
sequence alignment score = 1701.8  
RMSD between 344 pruned atom pairs is 0.842 angstroms; (across all 355 pairs:
1.126)  
  

> show #3 models

> select #2/A:327

14 atoms, 15 bonds, 1 residue, 1 model selected  
Alignment identifier is 2/A  

> style sel sphere

Changed 14 atom styles  

> view sel

> select #3/A:327, A/329

14 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel ball

Changed 14 atom styles  

> select #2/A:327

14 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel ball

Changed 14 atom styles  

> select #2/A:329

5 atoms, 4 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel ball

Changed 5 atom styles  

> select #2/E:45-55

80 atoms, 81 bonds, 11 residues, 1 model selected  

> view sel

> select clear

> select up

4 atoms, 2 bonds, 2 residues, 1 model selected  

> hide sel atoms

> select up

19 atoms, 17 bonds, 2 residues, 1 model selected  

> hide sel atoms

> select clear

> hide atoms

> select #2/E:45-55

80 atoms, 81 bonds, 11 residues, 1 model selected  

> show sel atoms

> select #3/A:327, A/329

14 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #2/A:327

14 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> select #2/A:329

5 atoms, 4 bonds, 1 residue, 1 model selected  

> show sel atoms

> select clear

> hide #3 models

> select #2/E:45-55

80 atoms, 81 bonds, 11 residues, 1 model selected  

> color sel byhetero

> volume style mesh

> volume style surface

> volume style mesh

> volume showOutlineBox true

> transparency 50

> transparency 0

> volume showOutlineBox false

> volume step 1

> volume step 2

> volume step 1

> lighting flat

> lighting full

> graphics silhouettes false

> lighting soft

> lighting simple

> ui tool show "Side View"

> view sel

> view

> view orient

> view

> view sel

> ui tool show "Side View"

> view sel

> view

> view orient

> preset "overall look" publication

Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t

  

> lighting soft

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting simple

> lighting soft

QWindowsNativeFileDialogBase::shellItem : Unhandled scheme: "data"  

> open C:/Users/Admin/Desktop/obrazki_complex/DHS_complex.pdb
> C:/Users/Admin/Desktop/obrazki_complex/DHS.cif
> C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_modified.cif
> C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_new.cif

Summary of feedback from opening
C:/Users/Admin/Desktop/obrazki_complex/DHS.cif  
---  
warnings | Missing entity information. Treating each chain as a separate
entity.  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
note | Fetching CCD CSS from http://ligand-expo.rcsb.org/reports/C/CSS/CSS.cif  
  
Summary of feedback from opening
C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_modified.cif  
---  
warnings | Skipping chem_comp category: Missing column 'type' near line 11  
Missing entity information. Treating each chain as a separate entity.  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
Skipping chem_comp category: Missing column 'type' near line 11571  
  
Summary of feedback from opening
C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_new.cif  
---  
warnings | Missing entity information. Treating each chain as a separate
entity.  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
  
Chain information for DHS_complex.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for DHS.cif #5  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for DHS_complex_modified.cif #6  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for DHS_complex_new.cif #7  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> hide #!2 models

> hide #!1 models

> hide #!7 models

> hide #!6 models

> hide #!5 models

> hide #!4 models

> show #!4 models

> close #7

> close #5

> close #4

> close #6

> show #3 models

> show #!2 models

> show #!1 models

> color #3 #00007f

> color #3 #4b4271

> color #3 #403171

> hide #3 models

> lighting simple

> ui tool show "Side View"

> view sel

> ui tool show "Side View"

> view sel

> ui tool show "Side View"

> graphics silhouettes true

> view sel

> hide #!2 models

> hide #!1 models

> open C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_modified.cif

Summary of feedback from opening
C:/Users/Admin/Desktop/obrazki_complex/DHS_complex_modified.cif  
---  
warnings | Skipping chem_comp category: Missing column 'type' near line 11  
Missing entity information. Treating each chain as a separate entity.  
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.  
Skipping chem_comp category: Missing column 'type' near line 11571  
  
Chain information for DHS_complex_modified.cif #4  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> open D:/COMPLEX_DHS_modified2.pdb

Chain information for COMPLEX_DHS_modified2.pdb #5  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> close #5

> close #4

> open J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex.pdb
> J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex_HDX.pdb
> J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex-noCSS.pdb

Summary of feedback from opening
J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex_HDX.pdb  
---  
warning | Ignored bad PDB record found on line 3266  
  
Chain information for DHS_complex.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for DHS_complex_HDX.pdb #5  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for DHS_complex-noCSS.pdb #6  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> hide #!6 models

> hide #!4 models

> show #!2 models

> hide #!5 models

> close #2

> close #3

> close #4

> close #5

> close #6

> open
> J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex_HDX.pdb
> J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/ELF_complex_HDX.pdb

Summary of feedback from opening
J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex_HDX.pdb  
---  
warning | Ignored bad PDB record found on line 3266  
  
Chain information for DHS_complex_HDX.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  
Chain information for ELF_complex_HDX.pdb #3  
---  
Chain | Description  
E | No description available  
  

> colour #2/B #efd264

> colour #2/C #a1ba9a

> colour #2/D #c0bcb6

> colour #2/A #8dabcc

> colour #3/E #ad7b93

> show #!1 models


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3.dev202110231141 (2021-10-23)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 462.31
OpenGL renderer: GeForce GTX 1060 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: G5 5587
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 34,129,870,848
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz
OSLanguage: pl-PL
Locale: ('pl_PL', 'cp1250')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1
    charset-normalizer: 2.0.7
    ChimeraX-AddCharge: 1.1.4
    ChimeraX-AddH: 2.1.10
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.1.5
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3.dev202110231141
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.3
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.4
    ChimeraX-ModelPanel: 1.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.4
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.5
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.6
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.10.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.5.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.2.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.8.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.0
    ParmEd: 3.2.0
    parso: 0.8.2
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.21
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.2
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.0
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1