![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Nov 12, 2021:
- 5:00 PM 2021-11-18 created by
- 4:56 PM DeveloperMeetings edited by
- (diff)
- 2:56 PM Ticket #5601 (Log templates from mmCIF files for theoretical models) created by
- Ben is interested in being able to show template sequence alignments, …
- 1:30 PM Ticket #5600 (Allow global fitting avoid clashes with some already fit molecules) created by
- Begin forwarded message: From: Oliver Clarke via ChimeraX-users …
- 12:28 PM Ticket #5595 (cartoon undo: 'list' object has no attribute 'ribbon_tether_opacities') closed by
- fixed: This bug in the cartoon tether command was fixed more than a year ago. …
- 12:21 PM Ticket #5591 (Crash creating morph interpolation) closed by
- can't reproduce: User was running morph command in ChimeraX 1.2.5. Python stack trace …
- 12:03 PM Ticket #5586 (Crash in Qt on exit) closed by
- duplicate: Not sure why the Mac crash reports are sometimes in JSON format, but …
- 11:42 AM Ticket #5596 (Modeller comparative: HTTP Error 403: Forbidden) closed by
- can't reproduce
- 11:34 AM Ticket #5594 (Fatal error during app initialization) closed by
- can't reproduce
- 11:31 AM Ticket #5584 (wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate: Fixed several months ago, soon after 1.2.5 release.
- 11:17 AM Ticket #5592 (Crash showing rapid access at startup) closed by
- duplicate
- 11:14 AM Ticket #5590 (Color editor calling into dead color button) closed by
- duplicate
- 11:13 AM Ticket #5589 (Color editor calling into dead color button) closed by
- duplicate: Hi Dmitry, Thanks for reporting this problem. We believe we fixed it …
- 10:49 AM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) closed by
- can't reproduce
- 10:49 AM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) reopened by
- 10:48 AM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) closed by
- can't reproduce: Well, a tantalizing amount of information, but without the structure …
- 10:45 AM Ticket #5599 (Crash setting StructureSeq chain_id) created by
- […]
- 10:24 AM Ticket #5598 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 10:14 AM Ticket #5597 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 9:23 AM Ticket #5582 (Startup error on Windows 7) closed by
- limitation
- 9:22 AM Ticket #5581 (Modeller: not enough args for format string) closed by
- duplicate: Hi Yen-Li, Thanks for reporting this problem. It was corrected near …
- 9:18 AM Ticket #5580 (Alphafold search blast results: 'NoneType' object has no attribute 'split') closed by
- duplicate
- 8:51 AM Ticket #5596 (Modeller comparative: HTTP Error 403: Forbidden) created by
- […]
- 8:33 AM Ticket #5595 (cartoon undo: 'list' object has no attribute 'ribbon_tether_opacities') created by
- […]
- 8:17 AM Ticket #5594 (Fatal error during app initialization) created by
- […]
- 7:43 AM Ticket #5593 (Cannot "color byattr" booleans) created by
- […] working session Cas Epitope.cxs
- 4:06 AM Ticket #5592 (Crash showing rapid access at startup) created by
- […]
- 1:48 AM Ticket #5591 (Crash creating morph interpolation) created by
- […]
- 1:31 AM Ticket #5590 (Color editor calling into dead color button) created by
- […]
- 1:30 AM Ticket #5589 (Color editor calling into dead color button) created by
- […]
Nov 11, 2021:
- 5:33 PM Ticket #5588 (Log blank) created by
- […] Bug in resent view and no log shown with pwd.png
- 3:52 PM Ticket #5587 (Cannot reshow Distances tool) created by
- […]
- 3:15 PM Ticket #5586 (Crash in Qt on exit) created by
- […]
- 9:51 AM Ticket #5585 (Problem opening file hyperlinked in Excel in ChimeraX) created by
- […]
- 5:41 AM Ticket #5584 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
Nov 10, 2021:
- 9:58 PM Ticket #5583 (Crash firing selection-changed trigger after opening Alphafold model) created by
- […]
- 9:57 PM Ticket #5582 (Startup error on Windows 7) created by
- […]
- 9:53 PM Ticket #5581 (Modeller: not enough args for format string) created by
- […]
- 8:20 PM Ticket #5580 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 3:06 PM Ticket #5579 (Alphafold search blast results: 'NoneType' object has no attribute 'split') created by
- […]
- 11:58 AM Ticket #5578 (Run AlphaFold on UCSF Wynton cluster) created by
- Would like to allow ChimeraX to submit AlphaFold jobs to the UCSF …
- 11:48 AM Ticket #5427 (Read EMAN format: cannot load .dylibs/libhdf5.200.dylib) closed by
- fixed: Presumed fixed. Tested on macOS Big Sur but not tested on macOS Catalina.
- 11:46 AM Ticket #5450 (crash taking sqrt()?!?) closed by
- can't reproduce
- 10:16 AM Ticket #5575 (Crash in Qt event loop after changing transparency, access violation) closed by
- can't reproduce: Crashed in the Qt event loop. Probably not related to the last …
- 9:50 AM Ticket #5577 (Crash in set_sseq_chain_id) closed by
- can't reproduce
- 9:00 AM Ticket #5577 (Crash in set_sseq_chain_id) created by
- […]
- 1:19 AM Ticket #5576 (Update coordinates: OpenMM: RuntimeError: Release Object) created by
- […]
Nov 9, 2021:
- 5:35 PM Training edited by
- (diff)
- 12:30 PM Ticket #5575 (Crash in Qt event loop after changing transparency, access violation) created by
- […]
- 12:15 PM Ticket #5572 (Blast results: invalid literal for int() with base 10) closed by
- fixed
- 11:19 AM Ticket #5564 (Build Structure: cannot change rotamer library) closed by
- fixed: Hi Charisma, Thanks for reporting this problem. I have fixed it now …
- 11:18 AM DeveloperMeetings edited by
- (diff)
- 11:16 AM Ticket #5574 (devel install does not replace previous bundle) created by
- The devel install command should replace the existing installed bundle …
- 11:12 AM Ticket #5568 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: Graphics driver bug, fails to start, ATI FirePro 2260 gpu (circa 2008).
- 11:10 AM Ticket #5567 (Disconnected screen crash) closed by
- duplicate: This ChimeraX crash is caused by removing an external screen on macOS …
- 11:04 AM Ticket #5566 (Crash in alphafold predict) closed by
- can't reproduce: I see ChimeraX crash sometime after you started an AlphaFold …
- 11:01 AM Ticket #5563 (vseries slider: list index out of range) closed by
- duplicate: Fixed several months ago after 1.2.5 release. User created vseries …
- 10:53 AM Ticket #5562 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) closed by
- duplicate: Fixed several months ago.
- 10:34 AM Ticket #5573 (Crash showing rapid access at startup) closed by
- can't reproduce
- 10:33 AM Ticket #5573 (Crash showing rapid access at startup) created by
- […]
- 9:35 AM Ticket #5572 (Blast results: invalid literal for int() with base 10) created by
- […]
- 8:59 AM Ticket #5571 (Blast: not enough values to unpack) closed by
- duplicate
- 8:55 AM Ticket #5571 (Blast: not enough values to unpack) created by
- […]
- 8:47 AM Ticket #5570 (Crash submitting Blast job) closed by
- can't reproduce
- 8:46 AM Ticket #5569 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- duplicate
- 7:49 AM Ticket #5570 (Crash submitting Blast job) created by
- […]
- 7:18 AM Ticket #5569 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 7:11 AM Ticket #5568 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 7:04 AM Ticket #5567 (Disconnected screen crash) created by
- […]
- 4:58 AM Ticket #5566 (Crash in alphafold predict) created by
- […]
- 3:54 AM Ticket #5565 (Lone '~' expands to ~ribbon) created by
- […]
Nov 8, 2021:
- 11:59 PM Ticket #5561 (include query model name in Blast results window) closed by
- fixed: Should be fixed in …
- 11:11 PM Ticket #5564 (Build Structure: cannot change rotamer library) created by
- […] Screen Shot 2021-11-09 at 16.11.12.png
- 9:14 PM Ticket #5563 (vseries slider: list index out of range) created by
- […]
- 4:55 PM Ticket #5562 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) created by
- […]
- 4:53 PM Ticket #5519 (Out of memory fetching/opening mmCIFs) closed by
- can't reproduce: The exact same set of commands works for me and the Windows Task …
- 4:28 PM Ticket #5540 (Question marks used for gaps instead of dashes) closed by
- fixed: Matchmaker is supposed to rectify those sequences to their normal …
- 10:42 AM Ticket #5558 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 645, ...) closed by
- nonchimerax: Apple graphics driver crash.
- 10:34 AM Ticket #5557 (Crash opening session) closed by
- can't reproduce
- 10:11 AM Ticket #5555 (failed starting of .exe file) closed by
- nonchimerax: Nothing is blocking the download on our end. If you can view the …
- 10:08 AM Ticket #5556 (Crash showing selection on alphafold model (swap buffers?)) closed by
- nonchimerax: It looks like the crash (access violation) was in OpenGL …
- 7:46 AM Ticket #5561 (include query model name in Blast results window) created by
- From: Elaine Meng <meng@…> Date: November 3, 2021 at …
- 7:00 AM Ticket #5560 (Alignment headers somehow being directly saved in sessions) created by
- […]
Nov 7, 2021:
- 8:50 PM Ticket #5559 (Blast Protein: wrapped C/C++ object of type QProgressBar has been deleted) created by
- […]
- 11:34 AM Ticket #5558 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 645, ...) created by
- […]
- 9:42 AM Ticket #5557 (Crash opening session) created by
- […]
- 7:44 AM Ticket #5556 (Crash showing selection on alphafold model (swap buffers?)) created by
- […]
Nov 6, 2021:
- 7:18 PM Ticket #5555 (failed starting of .exe file) created by
- […] failed.docx
- 1:57 AM Ticket #5554 (Crash drawing side view) created by
- […]
- 1:33 AM Ticket #5553 (Version check bug) closed by
- fixed: Remove debug code that got checked in.
Nov 5, 2021:
- 5:14 PM Ticket #5552 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) closed by
- duplicate: This error saving a session is fixed in the current ChimeraX 1.3 …
- 2:42 PM Ticket #5553 (Version check bug) created by
- […]
- 10:09 AM Ticket #5550 (Alphafold match: 'Structure' object has no attribute ...) closed by
- fixed: Fixed in 1.3 and 1.4. When alignment of alphafold model to an …
- 9:45 AM Ticket #5548 (Windows 7 graphics error) closed by
- nonchimerax: ChimeraX does not support Windows 7, only Windows 10 as shown on the …
- 9:43 AM Ticket #5547 (Crash disconnecting screen) closed by
- duplicate: Qt bug fixed in Qt 5.15 used in current ChimeraX. This crash has been …
- 9:37 AM Ticket #5546 (Crash saving session including maps) closed by
- can't reproduce: Looks like it crashed getting the attribute of an atomic structure, …
- 9:13 AM Ticket #5552 (morph same true: Execution of 'Structure' object's 'coordset_size' ...) created by
- […]
- 8:53 AM Ticket #5551 (unhashable type: 'Color') closed by
- duplicate: Hi Juliana, Thanks for reporting this problem. It was fixed in the …
- 8:48 AM Ticket #5549 (Access violation on Windows in Qt event loop) closed by
- can't reproduce
- 8:14 AM Ticket #5545 (Error in toolshed error message) closed by
- duplicate: Hi Matthew, The toolshed is trying to tell you that the Clipper …
- 7:42 AM Ticket #5551 (unhashable type: 'Color') created by
- […]
- 4:07 AM Ticket #5550 (Alphafold match: 'Structure' object has no attribute ...) created by
- […]
- 1:35 AM Ticket #5549 (Access violation on Windows in Qt event loop) created by
- […]
- 1:34 AM Ticket #5548 (Windows 7 graphics error) created by
- […]
- 12:30 AM Ticket #5547 (Crash disconnecting screen) created by
- […]
Nov 4, 2021:
- 10:20 PM Ticket #5546 (Crash saving session including maps) created by
- […]
- 8:27 PM Ticket #5545 (Error in toolshed error message) created by
- […]
- 8:22 PM Ticket #5544 (Allow EMDB fetch command to choose europe/japan/china/us and ftp/https) closed by
- fixed: Added the extra EMDB fetch options in ChimeraX 1.3 and 1.4.
- 8:18 PM Ticket #5544 (Allow EMDB fetch command to choose europe/japan/china/us and ftp/https) created by
- The NIH 3D pipeline would like to fetch EMDB maps from the US mirror …
- 4:38 PM NTTData edited by
- (diff)
- 2:22 PM NTTData edited by
- (diff)
- 2:09 PM NTTData edited by
- (diff)
- 2:07 PM NTTData edited by
- (diff)
- 1:35 PM NTTData edited by
- (diff)
- 12:49 PM 2021-11-4 edited by
- (diff)
- 12:22 PM Ticket #5542 (VR crash in openvr waitGetPoses()) closed by
- can't reproduce: Crash in OpenVR waitGetPoses(). Interesting to see VR use on Linux. …
- 12:09 PM 2021-11-4 edited by
- (diff)
- 12:07 PM 2021-11-4 edited by
- (diff)
- 12:04 PM 2021-11-4 edited by
- (diff)
- 11:48 AM 2021-11-4 edited by
- (diff)
- 11:22 AM 2021-11-4 edited by
- (diff)
- 11:18 AM 2021-11-4 edited by
- (diff)
- 11:17 AM 2021-11-4 edited by
- (diff)
- 11:03 AM Ticket #5543 (VR crash in drawing) closed by
- duplicate
- 11:01 AM Ticket #5541 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) closed by
- can't reproduce
- 10:50 AM Ticket #5543 (VR crash in drawing) created by
- […]
- 10:49 AM Ticket #5542 (VR crash in openvr waitGetPoses()) created by
- […]
- 10:45 AM Ticket #5541 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) created by
- […]
- 10:12 AM Ticket #5539 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) closed by
- can't reproduce
- 10:10 AM Ticket #5538 (Region bound checking using None) closed by
- duplicate
- 9:16 AM Ticket #5540 (Question marks used for gaps instead of dashes) created by
- […] questionmarks.cxs
- 6:31 AM Ticket #5539 (Crash showing rapid access at startup, Linux ChimeraX 1.2.5) created by
- […]
Nov 3, 2021:
- 9:55 PM Ticket #5538 (Region bound checking using None) created by
- […] Screen Shot 2021-11-04 at 13.54.19.png
- 5:50 PM Ticket #5537 (Add tool to measure pocket volumes) created by
- Begin forwarded message: From: Elaine Meng Subject: Re: …
- 1:50 PM Ticket #5536 (Duplicate pseudobond depiction) created by
- […] ChimeraX_pbond_bug_report.png
- 1:27 PM Dev2021-11-11 edited by
- (diff)
- 1:27 PM ChangeLog edited by
- (diff)
- 1:25 PM Ticket #5530 (Write GLTF: index 1 is out of bounds for axis 0 with size 1) closed by
- duplicate: Fixed 5 months ago. Ticket #4788
- 1:23 PM Dev2021-11-11 created by
- 1:21 PM DeveloperMeetings edited by
- (diff)
- 1:15 PM Ticket #5534 (Unknown crash) closed by
- can't reproduce: It is puzzling that none of the commands in the log enable clipping. …
- 12:02 PM Ticket #5527 (Atomic structures with all atoms deleted are not closed in Python) closed by
- fixed: I tested out having the structure live on with zero atoms and …
- 10:52 AM Ticket #5532 (Region bound checking using None) closed by
- fixed
- 10:12 AM Ticket #5535 (Matchmaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate: Duplicate of #5207
- 9:58 AM Ticket #5533 (Unknown crash) closed by
- can't reproduce: Hundreds of open-dialog "fatal" errors. The Python log ended open …
- 8:43 AM Ticket #5535 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 8:22 AM Ticket #5534 (Unknown crash) created by
- […]
- 7:11 AM Ticket #5533 (Unknown crash) created by
- […]
- 3:31 AM Ticket #5532 (Region bound checking using None) created by
- […]
- 2:18 AM Ticket #5531 (Problems connecting with Visual Studio Code) created by
- […] pyvsc-run-isolated.py
Nov 2, 2021:
- 11:43 PM Ticket #5529 (Remove lineprofiler from prereqs) closed by
- fixed: Removed prereqs/lineprofiler.
- 11:30 PM Ticket #5530 (Write GLTF: index 1 is out of bounds for axis 0 with size 1) created by
- […]
- 8:08 PM Ticket #5529 (Remove lineprofiler from prereqs) created by
- I think we can git remove the prereqs/lineprofiler directory. It is …
- 7:22 PM Ticket #5528 (Remove pywin32 and wmi dependencies used by bug reporter on Windows) created by
- We've been getting github security warnings about pywin32 in ChimeraX. …
- 3:21 PM Ticket #5527 (Atomic structures with all atoms deleted are not closed in Python) created by
- The atomic structure C++ code deletes the C++ structure automatically …
- 2:59 PM Ticket #5525 (Morph problem) closed by
- fixed: Fixed in ChimeraX 1.3 and 1.4 daily build. Morph code was checking …
- 2:20 PM Training edited by
- (diff)
- 11:46 AM Ticket #5526 (Probably garbage collection crash) closed by
- duplicate
- 11:09 AM Ticket #5524 (Modeller failure) closed by
- fixed: Hi Deepesh, Thanks for reporting this problem. It turns out that our …
- 10:45 AM Ticket #5526 (Probably garbage collection crash) created by
- […]
- 10:20 AM Ticket #5525 (Morph problem) created by
- […]
- 10:08 AM Ticket #5523 (Unknown crash) closed by
- can't reproduce
- 9:42 AM 2021-11-4 created by
- 9:41 AM DeveloperMeetings edited by
- (diff)
- 9:35 AM Ticket #5524 (Modeller failure) created by
- […]
- 2:39 AM Ticket #5523 (Unknown crash) created by
- […]
Nov 1, 2021:
- 10:26 PM Ticket #5522 (Clashes syntax error) created by
- […]
- 4:59 PM Ticket #5520 (Unknown crash with unformatted stack trace) closed by
- can't reproduce: Thanks for the report. The crash stack trace gives no indication of …
- 11:57 AM Ticket #5518 (Graphics crash, macOS 10.15, Intel Iris Graphics 6100) closed by
- nonchimerax: Apple graphics driver crash.
- 11:43 AM Ticket #5514 (volume erase: out of memory) closed by
- duplicate: OpenGL out of memory, duplicate of #5384, error message has been …
- 10:54 AM Ticket #5521 (Add Charge: bad hydrogen name) closed by
- duplicate
- 10:38 AM Ticket #5516 (Unknown crash) closed by
- can't reproduce
- 10:18 AM Ticket #5515 (Qt crash during exit) closed by
- can't reproduce
- 10:15 AM Ticket #5513 (Crash clicking close button of dock widget) closed by
- can't reproduce
- 10:12 AM Ticket #5512 (Download page incorrect in Chrome) closed by
- fixed
- 10:09 AM Ticket #5511 (Assertion failed: (backingScaleFactor > 0.f), function ...) closed by
- can't reproduce: Seems to be a problem with dragging/dropping a color from/to the color …
- 9:52 AM Ticket #5521 (Add Charge: bad hydrogen name) created by
- […]
- 8:02 AM Ticket #5520 (Unknown crash with unformatted stack trace) created by
- […]
Oct 31, 2021:
- 12:42 PM Ticket #5519 (Out of memory fetching/opening mmCIFs) created by
- […]
- 12:33 AM Ticket #5518 (Graphics crash, macOS 10.15, Intel Iris Graphics 6100) created by
- […]
- 12:30 AM Ticket #5517 (Unknown crash) created by
- […]
- 12:18 AM Ticket #5516 (Unknown crash) created by
- […]
Oct 30, 2021:
- 9:31 AM Ticket #5515 (Qt crash during exit) created by
- […]
- 9:22 AM Ticket #5514 (volume erase: out of memory) created by
- […]
- 3:37 AM Ticket #5499 (MD template error) closed by
- fixed: Updated template in ISOLDE's DB, and sent a copy to the user.
- 2:10 AM Ticket #5513 (Crash clicking close button of dock widget) created by
- […]
Oct 29, 2021:
- 9:28 PM Ticket #5314 (Movie encode on Redhat Enterprise Linux 8 fails to find libbz2.so) closed by
- fixed: Fixed by compiling ffmpeg separately for CentOS. Ubuntu has ffmpeg in …
- 9:24 PM Ticket #5247 (Make download and older releases pages easier to maintain) closed by
- fixed: Added script to generate JSON files for current candidate, daily, and …
- 9:08 PM ChangeLog edited by
- (diff)
- 6:21 PM Ticket #5512 (Download page incorrect in Chrome) created by
- […]
- 3:02 PM Ticket #5511 (Assertion failed: (backingScaleFactor > 0.f), function ...) created by
- […]
- 12:22 PM Ticket #5501 (Cannot save session: bytes object is too large) closed by
- fixed: Added error message that explain 4Gb limit and suggests saving map in …
- 11:35 AM Ticket #5509 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: Windows 7 is not supported. Error appears to be a graphics driver problem.
- 11:34 AM Ticket #5508 (Graphics driver crash, macOS 11.6, Intel UHD Graphics 617, report 2) closed by
- duplicate: Same user as #5496 reported yesterday. Using 9 Gbytes of memory on a …
- 11:30 AM Ticket #5510 (add charge failure) closed by
- fixed
- 11:29 AM Ticket #5507 (Crash updating file history) closed by
- nonchimerax: Setting html for the file history Qt html widget crashed. It was …
- 11:14 AM Ticket #5510 (add charge failure) created by
- […]
- 11:00 AM Ticket #5509 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 10:59 AM Ticket #5508 (Graphics driver crash, macOS 11.6, Intel UHD Graphics 617, report 2) created by
- […]
- 10:57 AM Ticket #5507 (Crash updating file history) created by
- […]
- 10:35 AM Ticket #5505 (Read PDB as .gro) closed by
- not a bug: Cannot read a PDB file as a .gro
- 10:30 AM Ticket #5503 (Cannot save session: bytes object is too large) closed by
- duplicate
- 10:29 AM Ticket #5502 (Cannot save session: bytes object is too large) closed by
- duplicate
- 9:58 AM Ticket #5506 (ChimeraX - Color by seq_conservation fails in tutorial) created by
- […]
Oct 28, 2021:
- 8:23 PM Ticket #5505 (Read PDB as .gro) created by
- […]
- 6:28 PM Ticket #5504 (Python shell broken with PyQt 6.2) created by
- […]
- 6:22 PM Ticket #5503 (Cannot save session: bytes object is too large) created by
- […]
- 6:04 PM Ticket #5502 (Cannot save session: bytes object is too large) created by
- […]
- 4:15 PM Ticket #5501 (Cannot save session: bytes object is too large) created by
- […]
- 4:04 PM Ticket #5497 (Graphics presets don't reset depthJump) closed by
- fixed: Thanks for catching that. I made the lighting presets simple, …
- 3:49 PM Ticket #5495 (Model tiling: 'NoneType' object is not iterable) closed by
- fixed: Fixed tile command when no model specifier given. Actual bug reported …
- 2:26 PM Dev2021-10-28 edited by
- (diff)
- 2:05 PM Ticket #5500 (stop bothering me) created by
- Add way to turn off being reminded that there is a ChimeraX update
- 12:22 PM 2021-10-28 edited by
- (diff)
- 12:14 PM Ticket #5499 (MD template error) created by
- […]
- 10:49 AM Ticket #5498 (Discontinuous secondary structure) closed by
- not a bug: Hi Andrea, In order to handle the case where a structure has adjacent …
- 10:38 AM Ticket #5498 (Discontinuous secondary structure) created by
- […] Screen Shot 2021-10-28 at 1.36.09 PM.png
- 10:32 AM Ticket #5490 (Conflicting attr registration) closed by
- fixed
- 10:05 AM Ticket #5496 (Graphics driver crash, macOS 11.6, Intel UHD Graphics 617) closed by
- nonchimerax: Apple graphics driver crash.
- 9:51 AM Ticket #5488 (wrapped C/C++ object of type QScreen has been deleted) closed by
- duplicate: Fixed 6 months ago, not in 1.2.5, #4538.
- 9:41 AM Ticket #5494 (Modeller: not enough args for format string) closed by
- fixed
- 8:58 AM Ticket #5497 (Graphics presets don't reset depthJump) created by
- […]
- 8:51 AM Ticket #5492 (Unknown crash) closed by
- can't reproduce: The "stack overflow" is different though.
- 8:48 AM Ticket #5491 (Crash in garbage collection during new-object allocation) closed by
- duplicate
- 8:44 AM Ticket #5489 (Unknown crash) closed by
- can't reproduce
- 5:07 AM Ticket #5496 (Graphics driver crash, macOS 11.6, Intel UHD Graphics 617) created by
- […]
- 4:24 AM Ticket #5495 (Model tiling: 'NoneType' object is not iterable) created by
- […]
- 3:30 AM Ticket #5494 (Modeller: not enough args for format string) created by
- […]
- 2:48 AM Ticket #5493 (H-bonds nowhere near nucleic acid depictions) created by
- […] double-helix-interaction-issue.png
- 2:24 AM Ticket #5492 (Unknown crash) created by
- […]
Oct 27, 2021:
- 9:18 PM Ticket #5491 (Crash in garbage collection during new-object allocation) created by
- […]
- 5:47 PM Ticket #5490 (Conflicting attr registration) created by
- […]
- 2:24 PM Ticket #5489 (Unknown crash) created by
- […]
- 2:10 PM Ticket #5484 (Chain IDs not written consistently) closed by
- fixed: The code to put spaces around short residue names was wrong. Not …
- 1:38 PM Ticket #5488 (wrapped C/C++ object of type QScreen has been deleted) created by
- […]
- 1:16 PM Ticket #5485 (Color button accessed after C++ deleted) closed by
- fixed: Instead of relying on __del__ (which doesn't get called for the …
- 11:03 AM Ticket #5487 (Graphics driver crash, macOS 10.5.7, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple graphics driver crash.
- 11:01 AM Ticket #5481 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple graphics driver crash.
- 10:59 AM Ticket #5479 (Crash changing silhouettes) closed by
- can't reproduce: We've seen this crash Windows fatal exception: access violation …
- 10:24 AM Ticket #5486 (Crash in garbage collection) closed by
- duplicate: Hi, Thanks for reporting this problem. We believe it is fixed in the …
- 10:07 AM Ticket #5483 (Show CAs only) closed by
- not a bug: As this is a usage question, forwarded it to chimerax-users mailing list
- 10:01 AM Ticket #5482 (Cannot save PDB) closed by
- duplicate
- 9:35 AM Ticket #5480 (Can't bond an atom to itself) closed by
- duplicate: Hi Allen, Could you upgrade your ChimeraX to the latest version and …
- 9:18 AM Ticket #5478 (All atoms for zone mask must be from a single model) closed by
-
fixed: I've already reworked this to throw a
UserErrorhere (and also to … - 9:01 AM Ticket #5477 (Cannot restore session: _pickle.UnpicklingError: invalid load key) closed by
- duplicate: Hi Kate, You need a newer version of ChimeraX in order to restore …
- 8:20 AM Ticket #5487 (Graphics driver crash, macOS 10.5.7, Intel Iris Plus Graphics) created by
- […]
- 7:57 AM Ticket #5486 (Crash in garbage collection) created by
- […]
- 6:34 AM Ticket #5485 (Color button accessed after C++ deleted) created by
- […]
- 4:35 AM Ticket #5484 (Chain IDs not written consistently) created by
- […] chains_renamed.pdb
- 4:25 AM Ticket #5483 (Show CAs only) created by
- […]
- 3:11 AM Ticket #5482 (Cannot save PDB) created by
- […]
- 2:53 AM Ticket #5481 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics) created by
- […]
- 12:48 AM Ticket #5480 (Can't bond an atom to itself) created by
- […]
Oct 26, 2021:
- 11:16 PM Ticket #5479 (Crash changing silhouettes) created by
- […]
- 5:57 PM Ticket #5478 (All atoms for zone mask must be from a single model) created by
- […]
- 5:10 PM Ticket #5477 (Cannot restore session: _pickle.UnpicklingError: invalid load key) created by
- […]
- 11:52 AM Ticket #5474 (Hangs reading PDB) closed by
- can't reproduce: Disturbing, but okay -- will close for now.
- 11:49 AM Ticket #5476 (1.3 release candidate cannot read 1.4 sessions) closed by
- fixed: Added code to release candidate to read 1.4 custom-attribute session info.
- 11:27 AM Ticket #5475 (Out of memory saving large image) closed by
- limitation: ChimeraX is not able to render an image as large as you requested with …
- 11:21 AM Ticket #5473 (toolshed python package parsing cannot handle quotes) closed by
- fixed: This will be fixed in the next daily build and the 1.3 release …
- 11:14 AM Ticket #5476 (1.3 release candidate cannot read 1.4 sessions) created by
- […] modelloops.cxs
- 10:49 AM Ticket #5475 (Out of memory saving large image) created by
- […]
- 10:37 AM Dev2021-10-28 created by
- 10:32 AM 2021-10-28 edited by
- (diff)
- 10:31 AM 2021-10-28 created by
- 10:30 AM DeveloperMeetings edited by
- (diff)
- 10:27 AM Ticket #5471 (Crash after hiding atomic model, Windows) closed by
- can't reproduce: Not enough information in the crash report to debug this. The Python …
- 9:39 AM Ticket #5472 (Crash in atomstruct::Atom::default_radius()) closed by
- duplicate: Duplicate of #5470
- 8:19 AM Ticket #5474 (Hangs reading PDB) created by
- […]
- 8:09 AM Ticket #5473 (toolshed python package parsing cannot handle quotes) created by
- […]
- 4:51 AM Ticket #5469 (Request for help in debugging) closed by
-
fixed: Looks like the problem is in passing the
std::vectorby const … - 12:54 AM Ticket #5472 (Crash in atomstruct::Atom::default_radius()) created by
- […]
Oct 25, 2021:
- 7:52 PM Ticket #5471 (Crash after hiding atomic model, Windows) created by
- […]
- 4:06 PM Ticket #5438 (Build frequently breaks installing cxservices) closed by
-
fixed: I made the
distcleantarget that gets called by … - 2:42 PM Ticket #5463 (Structure.delete_alt_locs() failing) closed by
- fixed: alt loc ANISOU info was being used after the altloc map had been …
- 2:31 PM Ticket #5470 (Crash in atomstruct::Atom::default_radius()) created by
- […]
- 12:20 PM Ticket #5469 (Request for help in debugging) created by
- […]
- 11:53 AM Ticket #5468 (Cannot restore session: _pickle.UnpicklingError: invalid load key) closed by
- not a bug: Hi Nitesh, We believe this error occurs when you try to restore a …
- 11:52 AM Ticket #5468 (Cannot restore session: _pickle.UnpicklingError: invalid load key) created by
- The following bug report has been submitted: Platform: …
- 11:35 AM Ticket #5467 (Allow reading Amira version 3.0 volume data) created by
- […]
- 11:23 AM Ticket #5466 (Crash showing rapid access at startup) closed by
- duplicate
- 11:21 AM Ticket #5466 (Crash showing rapid access at startup) created by
- […]
- 11:00 AM Ticket #5465 (Unknown crash) closed by
- can't reproduce
- 10:51 AM Ticket #5461 (Graphics driver crash, macOS 11.6, Intel UHD Graphics 617) closed by
- nonchimerax: Apple graphics driver crash.
- 10:08 AM Ticket #5462 (Crash with largely trashed stack) closed by
- can't reproduce
- 10:04 AM Ticket #5460 (problem with displaying secondary structures) closed by
- not a bug: Forwarded to chimerax-users list and answered there.
- 9:37 AM Ticket #5458 (Unknown crash) closed by
- can't reproduce
- 9:20 AM Ticket #5465 (Unknown crash) created by
- […]
- 7:27 AM Ticket #5464 (better template residue support) created by
- […]
- 5:45 AM Ticket #5463 (Structure.delete_alt_locs() failing) created by
- […]
Oct 24, 2021:
Oct 23, 2021:
- 5:01 PM Ticket #5461 (Graphics driver crash, macOS 11.6, Intel UHD Graphics 617) created by
- […]
- 3:06 PM Ticket #5460 (problem with displaying secondary structures) created by
- […] [[Image(...)]]
- 12:19 AM Ticket #5459 (MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ...) created by
- […]
Oct 22, 2021:
- 6:02 PM Ticket #5458 (Unknown crash) created by
- […]
- 4:09 PM Ticket #5453 (Problem saving blast table info in session) closed by
- fixed: Fixed in the latest daily build.
- 3:58 PM Ticket #5446 (Modeller residue indices wrong) closed by
- fixed: Okay, even *more* fixed now! :-)
- 3:42 PM Ticket #5441 (Crash with Qt 6.2 showing Shell tool) closed by
- fixed: Closing this ticket since the crash is now avoided. Will add the …
- 2:36 PM Ticket #5456 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple graphics driver crash. Unfortunately Apple graphics drivers are …
- 2:17 PM Ticket #5455 (Difficulty panning/zooming) closed by
- duplicate: Follow up to #5454. Since the loss of multitouch trackpad events …
- 1:02 PM Ticket #5457 (Mac multitouch rotation does not work after Log undocked) created by
- […]
- 11:03 AM Ticket #5446 (Modeller residue indices wrong) reopened by
- For the UniProt sequence it remodels well past the point it should, …
- 10:23 AM Dev2021-10-14 edited by
- (diff)
- 5:45 AM Ticket #5456 (Graphics driver crash, macOS 11.6, Intel Iris Plus Graphics 655) created by
- […]
- 4:46 AM Ticket #5455 (Difficulty panning/zooming) created by
- […]
- 4:42 AM Ticket #5454 (Difficulty panning/zooming) created by
- […]
- 12:22 AM Ticket #5453 (Problem saving blast table info in session) created by
- […]
Oct 21, 2021:
- 7:06 PM 2021-10-21 edited by
- (diff)
- 6:42 PM Ticket #5451 (Crash in ctypes) closed by
- duplicate: Yep, looks like garbage collection crash. Still don't have any leads …
- 6:30 PM Ticket #5448 (Check if EMDB maps can be fetched by https instead of ftp) closed by
- fixed: Made EMDB fetch use Japan mirror if hostname ends in ".jp".
- 6:08 PM Ticket #5452 (Crash in garbage collection during new-object allocation) closed by
- duplicate
- 6:00 PM Ticket #5452 (Crash in garbage collection during new-object allocation) created by
- […]
- 5:57 PM Ticket #5445 (coordination number does not match sum of ligand denticity) closed by
- not a bug: Hi Tony, Sorry to waste a bunch of your time, but this report was …
- 5:55 PM Ticket #5451 (Crash in ctypes) created by
- […]
- 5:53 PM Ticket #5449 (Will NIH 3D pipeline script work with new EMDB metadata format?) closed by
- not a bug
- 5:26 PM Ticket #5446 (Modeller residue indices wrong) closed by
- fixed
- 5:05 PM Ticket #5447 (Crash after AlphaFold prediction finishes) closed by
- can't reproduce: Oh, I see. So they were rather indirectly AlphaFold related, just …
- 4:50 PM Ticket #5450 (crash taking sqrt()?!?) created by
- […]
- 4:33 PM Ticket #5432 (Support chain merging in Structure.combine()) closed by
- limitation: Upon further reflection, preservation of custom attributes depends …
- 4:12 PM Ticket #5449 (Will NIH 3D pipeline script work with new EMDB metadata format?) created by
- Will the change to EMDB data model v3 effect how the NIH 3D ChimeraX …
- 3:25 PM Ticket #5443 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: ChimeraX runs on Windows 10. It is not supported on Windows 7. This …
- 2:18 PM NTTData edited by
- (diff)
- 2:10 PM NTTData edited by
- (diff)
- 1:45 PM NTTData edited by
- (diff)
- 1:39 PM Ticket #5448 (Check if EMDB maps can be fetched by https instead of ftp) created by
- NIH 3D pipeline is fetching EMDB maps by ftp. That is frowned on in …
- 1:03 PM Ticket #5447 (Crash after AlphaFold prediction finishes) created by
- […]
- 10:29 AM Ticket #5446 (Modeller residue indices wrong) created by
- […] bloop.cxs
- 9:57 AM Ticket #5444 (Crash reading PDB file) closed by
- can't reproduce
- 8:50 AM GrantAims2 edited by
- (diff)
- 7:28 AM Ticket #5445 (coordination number does not match sum of ligand denticity) created by
- […]
- 4:03 AM Ticket #5444 (Crash reading PDB file) created by
- […]
- 2:19 AM WikiStart edited by
- (diff)
- 2:16 AM GrantAims2 edited by
- (diff)
- 2:15 AM GrantAims2 edited by
- (diff)
- 2:14 AM GrantAims2 edited by
- (diff)
- 2:12 AM GrantAims2 edited by
- (diff)
- 2:05 AM GrantAims2 edited by
- (diff)
- 2:04 AM GrantAims2 edited by
- (diff)
- 2:04 AM GrantAims2 edited by
- (diff)
- 2:01 AM GrantAims2 edited by
- (diff)
- 1:46 AM GrantAims2 created by
- 1:32 AM Grants edited by
- (diff)
- 1:28 AM Grants edited by
- (diff)
- 1:26 AM Grants created by
Oct 20, 2021:
- 11:06 PM Ticket #5443 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 5:21 PM Ticket #5249 (RFE: model-restriction widget for clashes/contacts) closed by
- fixed: Implemented an 'ignoreHiddenModels' option to the command, default …
- 5:16 PM Ticket #5442 (multiple columns of options) created by
- Currently a set options is constrained to be in a single column. …
- 12:56 PM Ticket #5433 (Bond connectivity changes don't update ribbon) closed by
- fixed: Adding chain-forming bond now updates ribbons.
- 10:31 AM Ticket #5441 (Crash with Qt 6.2 showing Shell tool) created by
- […]
- 10:21 AM Ticket #5436 (peptide ligand not labeled when only cartoon shown) closed by
- wontfix: Bad input data. The PDB should fix this entry so the 5 residues are …
- 9:37 AM Ticket #5440 (Unknown crash) closed by
- can't reproduce
- 9:35 AM Ticket #5439 (Daily build download error) closed by
- fixed: Hi Guillaume, Thanks for reporting this problem. We believe it is …
- 9:32 AM Ticket #5435 (Crash reading PDB file) closed by
- can't reproduce: Possibly duplicate. Would need actual PDB file to debug.
- 9:08 AM Ticket #5440 (Unknown crash) created by
- […]
- 12:19 AM Ticket #5439 (Daily build download error) created by
- […]
Oct 19, 2021:
- 6:00 PM 2021-10-21 created by
- 5:58 PM DeveloperMeetings edited by
- (diff)
- 5:51 PM Ticket #5438 (Build frequently breaks installing cxservices) created by
- In recent months my developer builds often break with some problem …
- 4:07 PM Ticket #5429 (QWindowsWindow::setGeometry: Unable to set geometry) closed by
- can't reproduce: The ChimeraX crash info is not very informative. It looks like it was …
- 3:30 PM Ticket #5437 (split into chains loses chain info) created by
- If I open a structure and show the sequence of a chain it includes the …
- 1:45 PM Ticket #5436 (peptide ligand not labeled when only cartoon shown) created by
- Although I can select cartoon on the main protein and label all its …
- 1:19 PM Ticket #5435 (Crash reading PDB file) created by
- […]
- 11:18 AM Ticket #5431 (Crash showing Rapid access at startup) closed by
- duplicate
- 8:54 AM Ticket #5434 (metadata interchange) created by
- […]
- 7:37 AM Ticket #5433 (Bond connectivity changes don't update ribbon) created by
- […]
- 7:32 AM Ticket #5432 (Support chain merging in Structure.combine()) created by
- […] test_session.cxs
- 6:28 AM Ticket #5431 (Crash showing Rapid access at startup) created by
- […]
- 6:10 AM Ticket #5430 (Crash saving session) created by
- […]
- 4:40 AM Ticket #5429 (QWindowsWindow::setGeometry: Unable to set geometry) created by
- […]
Oct 18, 2021:
- 10:47 PM Ticket #5422 (Installation problems on Debian "Bullseye") closed by
- limitation: Unfortunately, we have currently limited our Linux support to Ubuntu …
- 4:08 PM Ticket #5428 ('measure volume' doesn't return value) closed by
- fixed: Fixed. Made measure volume and measure area return total volume and …
- 1:31 PM Ticket #5428 ('measure volume' doesn't return value) created by
- run(session, "measure volume #1") logs the volume, but doesn't return it.
- 11:54 AM Ticket #5427 (Read EMAN format: cannot load .dylibs/libhdf5.200.dylib) created by
- […]
- 11:50 AM Ticket #5425 (no 'contacts' in interfaces.cmd) closed by
- fixed: Fixed. Contacts command was renamed interfaces but programmer docs …
- 10:41 AM Ticket #5426 (Unknown crash) created by
- […]
- 10:41 AM Ticket #5425 (no 'contacts' in interfaces.cmd) created by
- WARNING: autodoc: failed to import function 'contacts' from module …
- 10:35 AM Ticket #5424 (Direct model panel editing) created by
- I would like to suggest/request that the "Models" panel should be able …
- 10:24 AM Ticket #5423 (Unknown crash) closed by
- can't reproduce
- 10:21 AM Ticket #5421 (Close event on already closed window) closed by
- can't reproduce
- 10:15 AM Ticket #5419 (Bug Reporter failure on Windows) closed by
- nonchimerax: This is a Windows system problem. Online info says "Error Code …
- 10:03 AM Ticket #5420 (restore session in older ChimeraX) closed by
- fixed: Hi Ira, As you figured out yourself, ChimeraX 1.2.5 can't restore …
- 9:38 AM Ticket #5423 (Unknown crash) created by
- […]
- 4:12 AM Ticket #5282 (Ramachandran plot clashes: wrapped C/C++ object of type QComboBox has ...) closed by
- can't reproduce: Thank you very much for sharing the model and structure factors. …
- 12:59 AM Ticket #5422 (Installation problems on Debian "Bullseye") created by
- […]
Oct 17, 2021:
Oct 16, 2021:
Oct 15, 2021:
- 11:34 PM Ticket #5419 (Bug Reporter failure on Windows) created by
- […]
- 2:26 PM Ticket #5412 (AlphaFold unzipping of results: expected str, bytes or os.PathLike ...) closed by
- fixed: Fixed. In case user manages to start two results.zip downloads before …
- 9:38 AM Ticket #5418 (Crash "access violation", no traceback) closed by
- can't reproduce: Though this crash is possibly while using the SEQCROW "Manage Models" …
- 1:53 AM Ticket #5349 (blast results load/align structure only aligns first model in NMR ensemble) closed by
- fixed: Should be fixed by …
Oct 14, 2021:
- 6:26 PM Ticket #5418 (Crash "access violation", no traceback) created by
- […]
- 4:52 PM Ticket #5415 (Coulombic coloring fails on 7mjo, sqm on ligand) closed by
- limitation
- 4:52 PM Ticket #5414 (Coulombic coloring fails on 7mjo, sqm cannot handle HIS+HIS) closed by
- limitation
- 4:45 PM Ticket #5413 (Dual display crash) closed by
- nonchimerax: It appears ChimeraX crashed in the Qt window toolkit when an external …
- 4:40 PM Ticket #5402 (ctypes access violation) closed by
- fixed
- 4:19 PM Dev2021-10-14 edited by
- (diff)
- 4:19 PM Dev2021-10-14 edited by
- (diff)
- 4:15 PM Ticket #5417 (Hide Windows installer signing password) created by
- Make Windows build redirect installer build to separate log so …
- 4:13 PM Ticket #5416 (Put checksums from download page on a separate page) created by
- Put link in Notes field of downloads table to checksums. Want to …
- 3:49 PM Ticket #5415 (Coulombic coloring fails on 7mjo, sqm on ligand) created by
- […]
- 3:42 PM Ticket #5414 (Coulombic coloring fails on 7mjo, sqm cannot handle HIS+HIS) created by
- […]
- 3:37 PM Ticket #5411 (Hung saving TIFF?) closed by
- can't reproduce: User typed ctrl-C to the shell (Linux) where ChimeraX started …
- 3:19 PM 2021-10-14 edited by
- (diff)
- 1:17 PM Ticket #5404 (Fix residue: Not enough connected atoms to form a dihedral) closed by
- fixed: I *think* everything in here has been taken care of by recent bug-fixes…
- 12:58 PM Ticket #5403 (debloat Blast input and output dialogs) closed by
- fixed: Great! Fixed in …
- 12:49 PM Ticket #5410 (Crash report: Permission denied) closed by
- duplicate
- 12:48 PM Ticket #5409 (ChimeraX bug report submission) closed by
- fixed
- 12:47 PM Ticket #5409 (ChimeraX bug report submission) reopened by
- 12:45 PM Ticket #5408 (Save settings: No such file or directory) closed by
- duplicate
- 12:43 PM Ticket #5406 (color byattr: min() arg is an empty sequence) closed by
- duplicate
- 12:14 PM 2021-10-14 edited by
- (diff)
- 12:00 PM 2021-10-14 edited by
- (diff)
- 11:56 AM 2021-10-14 edited by
- (diff)
- 11:53 AM 2021-10-14 edited by
- (diff)
- 11:53 AM Ticket #5413 (Dual display crash) created by
- […]
- 11:49 AM 2021-10-14 edited by
- (diff)
- 11:22 AM 2021-10-14 edited by
- (diff)
- 11:22 AM 2021-10-14 edited by
- (diff)
- 11:15 AM Ticket #5412 (AlphaFold unzipping of results: expected str, bytes or os.PathLike ...) created by
- […]
- 9:33 AM Ticket #5409 (ChimeraX bug report submission) closed by
- not a bug: The AlphaFold bundle import was fixed in #5399 yesterday, so on …
- 7:18 AM Ticket #5411 (Hung saving TIFF?) created by
- […]
- 7:02 AM Ticket #5410 (Crash report: Permission denied) created by
- […]
- 5:56 AM Ticket #5409 (ChimeraX bug report submission) created by
- […]
Oct 13, 2021:
- 7:54 PM Ticket #5408 (Save settings: No such file or directory) created by
- […]
- 3:05 PM Ticket #5407 (Display HTML within table) created by
- Involves implementing a QStyledItemDelegate subclass.
- 2:18 PM Ticket #5398 (hide-dust shortcut: local variable 'maps' referenced before assignment) closed by
- duplicate: Fixed 4 months ago. #4829
- 2:16 PM Ticket #5406 (color byattr: min() arg is an empty sequence) created by
- […]
- 2:02 PM Ticket #5405 (Problem coloring chains) created by
- […]
- 1:45 PM Ticket #5404 (Fix residue: Not enough connected atoms to form a dihedral) created by
- […]
- 1:05 PM Ticket #5403 (debloat Blast input and output dialogs) created by
- From: Eric Pettersen <pett@…> Subject: Widget spacing Date: …
- 12:31 PM Ticket #5402 (ctypes access violation) created by
- […]
- 11:30 AM Ticket #5401 (Blast Protein: Ligand Formulas (chemical formulas) hard to read) created by
- The Ligand Formulas (chemical formulas of ligand residues) are hard to …
- 11:28 AM Ticket #5394 (Blast Protein empty Ligand Symbols column) closed by
- fixed: I had the wrong graphql query, sorry! …
- 11:15 AM Ticket #5394 (Blast Protein empty Ligand Symbols column) reopened by
- 10:22 AM Dev2021-10-14 edited by
- (diff)
- 9:22 AM Ticket #4963 (residue_graph: edges should be a n x 2 array of unsigned ints) closed by
- fixed: Really sorry for my ridiculously slow response to this - it's been a …
- 9:12 AM Ticket #5400 (ISOLDE simulation: No compatible CUDA device is available) closed by
- not a bug: Looks like your display driver version is too old. OpenMM uses CUDA …
- 9:10 AM Ticket #5399 (AlphaFold failure due to blast reorganization) closed by
- fixed: Fixed in …
- 8:53 AM Ticket #5397 (Crash in Qt on exit) closed by
- duplicate
- 8:14 AM Ticket #4964 (residue_graph: edges should be a n x 2 array of unsigned ints) closed by
- fixed: Shouldn't hit this traceback anymore. ISOLDE still won't rebuild …
- 7:15 AM Ticket #5400 (ISOLDE simulation: No compatible CUDA device is available) created by
- […]
- 7:01 AM Ticket #5399 (AlphaFold failure due to blast reorganization) created by
- […]
- 6:28 AM Ticket #5398 (hide-dust shortcut: local variable 'maps' referenced before assignment) created by
- […]
- 5:35 AM Ticket #4976 (Possibly fetching 'residues' of dead Structure) closed by
- fixed
- 5:25 AM Ticket #5026 ('SplitStereoCamera' object has no attribute 'field_width') closed by
-
fixed:
field widthis now only used when the camera is orthographic. - 5:22 AM Ticket #5037 (Update ISOLDE rotamers: wrapped C/C++ object of type QTableWidget has ...) closed by
- fixed
- 5:21 AM Ticket #5085 (ISOLDE: wrapped C/C++ object of type QTableWidget has been deleted) closed by
- fixed
- 5:21 AM Ticket #5140 (OpenMM: Error initializing CUDA: CUDA_ERROR_UNKNOWN) closed by
- can't reproduce: Actually, looking at where it crashed it's probably not a memory …
- 5:14 AM Ticket #5236 (Crash in OpenMM finding clashes) closed by
- can't reproduce: Not much to go on here, I'm afraid. Best advice is to update to …
- 5:11 AM Ticket #5272 (ISOLDE: All atoms for zone mask must be from a single model!) closed by
- fixed
- 4:02 AM Ticket #5277 (ISOLDE: various dead widgets being accessed) closed by
- duplicate: See my response to #5282 - for now, this can be avoided by not closing …
- 3:44 AM Ticket #5296 (PEE template incorrect) closed by
- fixed: Will close this as "fixed". The issue of possible out-of-date …
- 3:42 AM Ticket #5322 (OpenMMException: Error compiling program: nvrtc: error: invalid value ...) closed by
- duplicate: Sorry about the slow response. This problem is caused by the CUDA 11.0 …
- 2:13 AM Ticket #5397 (Crash in Qt on exit) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
