Opened 4 years ago

Closed 4 years ago

#5563 closed defect (duplicate)

vseries slider: list index out of range

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Volume Data Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_000.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_001.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_002.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_003.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_004.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_005.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_006.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_007.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_008.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_009.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_010.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_011.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_012.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_013.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_014.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_015.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_016.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_017.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_018.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_019.mrc

Opened frame_000.mrc as #1.1, grid size 256,256,256, pixel 1.18, shown at
level 0.365, step 1, values float32  
Opened frame_001.mrc as #1.2, grid size 256,256,256, pixel 1.18, shown at
level 0.359, step 1, values float32  
Opened frame_002.mrc as #1.3, grid size 256,256,256, pixel 1.18, shown at
level 0.354, step 1, values float32  
Opened frame_003.mrc as #1.4, grid size 256,256,256, pixel 1.18, shown at
level 0.349, step 1, values float32  
Opened frame_004.mrc as #1.5, grid size 256,256,256, pixel 1.18, shown at
level 0.345, step 1, values float32  
Opened frame_005.mrc as #1.6, grid size 256,256,256, pixel 1.18, shown at
level 0.342, step 1, values float32  
Opened frame_006.mrc as #1.7, grid size 256,256,256, pixel 1.18, shown at
level 0.34, step 1, values float32  
Opened frame_007.mrc as #1.8, grid size 256,256,256, pixel 1.18, shown at
level 0.338, step 1, values float32  
Opened frame_008.mrc as #1.9, grid size 256,256,256, pixel 1.18, shown at
level 0.336, step 1, values float32  
Opened frame_009.mrc as #1.10, grid size 256,256,256, pixel 1.18, shown at
level 0.334, step 1, values float32  
Opened frame_010.mrc as #1.11, grid size 256,256,256, pixel 1.18, shown at
level 0.334, step 1, values float32  
Opened frame_011.mrc as #1.12, grid size 256,256,256, pixel 1.18, shown at
level 0.333, step 1, values float32  
Opened frame_012.mrc as #1.13, grid size 256,256,256, pixel 1.18, shown at
level 0.334, step 1, values float32  
Opened frame_013.mrc as #1.14, grid size 256,256,256, pixel 1.18, shown at
level 0.335, step 1, values float32  
Opened frame_014.mrc as #1.15, grid size 256,256,256, pixel 1.18, shown at
level 0.338, step 1, values float32  
Opened frame_015.mrc as #1.16, grid size 256,256,256, pixel 1.18, shown at
level 0.342, step 1, values float32  
Opened frame_016.mrc as #1.17, grid size 256,256,256, pixel 1.18, shown at
level 0.347, step 1, values float32  
Opened frame_017.mrc as #1.18, grid size 256,256,256, pixel 1.18, shown at
level 0.352, step 1, values float32  
Opened frame_018.mrc as #1.19, grid size 256,256,256, pixel 1.18, shown at
level 0.358, step 1, values float32  
Opened frame_019.mrc as #1.20, grid size 256,256,256, pixel 1.18, shown at
level 0.363, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J268_003_volume_map_sharp.mrc
> format mrc

Opened cryosparc_P1_J268_003_volume_map_sharp.mrc as #2, grid size
256,256,256, pixel 1.18, shown at level 0.254, step 1, values float32  

> close #2

> ui tool show "Show Volume Menu"

> ui tool show "Volume Viewer"

> hide #!1.2 models

> show #!1.2 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.17 models

> show #!1.17 models

> hide #!1 models

> show #!1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.2 models

> hide #!1.1 models

> show #!1.2 models

> show #!1.1 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.4 models

> show #!1.4 models

> ui tool show "Volume Viewer"

> show #!1 target m

> view #1 clip false

> view #1 clip false

> select #1

41 models selected  

> ~select #1

Nothing selected  

> select #1

41 models selected  

> ~select #1

Nothing selected  

> select #1

41 models selected  

> ~select #1

Nothing selected  

> select #1.1

2 models selected  

> select #1.2

2 models selected  

> ~select #1.2

Nothing selected  

> ~select #1.1

Nothing selected  

> ui tool show "Map Statistics"

> measure mapstats

Map frame_000.mrc #1.1, minimum -0.2439, maximum 0.9396, mean 0.004637, SD
0.06439, RMS 0.06456  
Map frame_001.mrc #1.2, minimum -0.2102, maximum 0.9334, mean 0.004662, SD
0.06373, RMS 0.0639  
Map frame_002.mrc #1.3, minimum -0.1771, maximum 0.9272, mean 0.004687, SD
0.06314, RMS 0.06331  
Map frame_003.mrc #1.4, minimum -0.144, maximum 0.921, mean 0.004712, SD
0.06262, RMS 0.06279  
Map frame_004.mrc #1.5, minimum -0.121, maximum 0.9147, mean 0.004738, SD
0.06217, RMS 0.06235  
Map frame_005.mrc #1.6, minimum -0.1045, maximum 0.9085, mean 0.004763, SD
0.06179, RMS 0.06197  
Map frame_006.mrc #1.7, minimum -0.08942, maximum 0.9023, mean 0.004788, SD
0.06149, RMS 0.06167  
Map frame_007.mrc #1.8, minimum -0.08605, maximum 0.8961, mean 0.004813, SD
0.06126, RMS 0.06145  
Map frame_008.mrc #1.9, minimum -0.08605, maximum 0.8899, mean 0.004838, SD
0.06111, RMS 0.0613  
Map frame_009.mrc #1.10, minimum -0.08606, maximum 0.8837, mean 0.004863, SD
0.06104, RMS 0.06123  
Map frame_010.mrc #1.11, minimum -0.08606, maximum 0.8779, mean 0.004889, SD
0.06104, RMS 0.06123  
Map frame_011.mrc #1.12, minimum -0.08695, maximum 0.8772, mean 0.004914, SD
0.06112, RMS 0.06132  
Map frame_012.mrc #1.13, minimum -0.08964, maximum 0.8807, mean 0.004939, SD
0.06128, RMS 0.06148  
Map frame_013.mrc #1.14, minimum -0.09397, maximum 0.8873, mean 0.004964, SD
0.06151, RMS 0.06171  
Map frame_014.mrc #1.15, minimum -0.1014, maximum 0.894, mean 0.004989, SD
0.06182, RMS 0.06202  
Map frame_015.mrc #1.16, minimum -0.13, maximum 0.9007, mean 0.005015, SD
0.06221, RMS 0.06241  
Map frame_016.mrc #1.17, minimum -0.1611, maximum 0.908, mean 0.00504, SD
0.06266, RMS 0.06286  
Map frame_017.mrc #1.18, minimum -0.1923, maximum 0.9168, mean 0.005065, SD
0.06319, RMS 0.06339  
Map frame_018.mrc #1.19, minimum -0.2234, maximum 0.9256, mean 0.00509, SD
0.06379, RMS 0.06399  
Map frame_019.mrc #1.20, minimum -0.2546, maximum 0.9344, mean 0.005115, SD
0.06445, RMS 0.06466  

> ui tool show "Volume Viewer"

> help help:user

> mseries slider #1.1-20

> mseries slider #1

> mseries slider #.1-20 pause 5 step 3

Missing or invalid "models" argument: invalid models specifier  

> vseries play #1 loop true

No volume series specified  

> vseries slider #1.1-20

> volume #1.1 level 0.2

> show #!1.1 models

> hide #!1.1 models

> volume #1.2 level 0.2

> hide #!1 models

> show #!1 models

> volume #1.3 level 0.2

> volume #1.4 level 0.2

> volume #1.5 level 0.2

> volume #1.6 level 0.2

> volume #1.7 level 0.2

> volume #1.8 level 0.2

> volume #1.9 level 0.2

> volume #1.10 level 0.2

> volume #1.11 level 0.2

> volume #1.12 level 0.2

> volume #1.13 level 0.2

> volume #1.14 level 0.2

> volume #1.15 level 0.2

> volume #1.16 level 0.2

> volume #1.17 level 0.2

> volume #1.18 level 0.2

> volume #1.19 level 0.2

> volume #1.20 level 0.2

> movie record

> movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0

Movie saved to /Users/uijin/Desktop/movie.mp4  
  

> hide #!1 models

> show #!1 models

> view #1.1 clip false

No displayed objects specified.  

> hide #!1 models

> show #!1 models

> view #1 clip false

> show #!1 target m

> show #!1 target m

> show #!1 target m

> show #!1.1 models

> view #1 clip false

> view #1 clip false

> show #!1.2 models

> show #!1.3 models

> show #!1.4 models

> hide #!1 models

> show #!1 models

> hide #!1 target m

> hide #!1 target m

> show #!1 models

> movie record

> movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0

Movie saved to /Users/uijin/Desktop/movie.mp4  
  

> movie record

> movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0

Movie saved to /Users/uijin/Desktop/movie.mp4  
  

> show #!1.1 models

> hide #!1.9 models

> show #!1.20 models

> hide #!1.20 models

> show #!1.20 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.20 models

> show #!1.9 models

> hide #!1.20 models

> movie record

> movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0

Movie saved to /Users/uijin/Desktop/movie.mp4  
  

> open
> /Users/uijin/Downloads/cryosparc_P1_J254_class_00_00082_volume_sharp.mrc

Opened cryosparc_P1_J254_class_00_00082_volume_sharp.mrc as #2, grid size
128,128,128, pixel 2.37, shown at level 0.864, step 1, values float32  

> open
> /Users/uijin/Downloads/cryosparc_P1_J254_class_01_00082_volume_sharp.mrc

Opened cryosparc_P1_J254_class_01_00082_volume_sharp.mrc as #3, grid size
128,128,128, pixel 2.37, shown at level 0.955, step 1, values float32  

> hide #!1 models

> volume #2 level 0.3291

> volume #3 level 0.4336

> hide #!2 models

> show #!2 models

> hide #!3 models

> show #!3 models

> volume #2 level 0.3702

> volume #2 level 0.3

> volume #3 level 0.3

> volume #3 level 0.5646

> volume #3 level 0.5335

> volume #2 level 0.3493

> hide #!2 models

> hide #!3 models

> show #!1 models

> show #!2 models

> show #!3 models

> hide #!1.2 models

> hide #!3 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_000.mrc

Opened cryosparc_P1_J301_cluster_000.mrc as #4, grid size 256,256,256, pixel
1.18, shown at level 0.336, step 1, values float32  

> hide #!1 models

> open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_004.mrc

Opened cryosparc_P1_J301_cluster_004.mrc as #5, grid size 256,256,256, pixel
1.18, shown at level 0.354, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_002.mrc

Opened cryosparc_P1_J301_cluster_002.mrc as #6, grid size 256,256,256, pixel
1.18, shown at level 0.336, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_001.mrc

Opened cryosparc_P1_J301_cluster_001.mrc as #7, grid size 256,256,256, pixel
1.18, shown at level 0.337, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_003.mrc

Opened cryosparc_P1_J301_cluster_003.mrc as #8, grid size 256,256,256, pixel
1.18, shown at level 0.354, step 1, values float32  

> view clip false

> hide #!4 models

> hide #!5 models

> hide #!6 models

> hide #!7 models

> show #!7 models

> hide #!8 models

> show #!6 models

> hide #!7 models

> show #!5 models

> hide #!6 models

> show #!4 models

> hide #!5 models

> hide #!4 models

> show #!4 models

> show #!5 models

> show #!6 models

> show #!7 models

> show #!8 models

> hide #!5 models

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> hide #!8 models

> volume #4 level 0.1525

> volume #6 level 0.1003

> volume #7 level 0.1096

> hide #!6 models

> hide #!4 models

> show #!4 models

> show #!6 models

> hide #!7 models

> hide #!6 models

> show #!1 models

> show #!6 models

> show #!7 models

> hide #!4 models

> hide #!6 models

> hide #!7 models

> show #!5 models

> hide #!5 models

> show #!8 models

> show #!5 models

> hide #!8 models

> show #!8 models

> volume #8 level 0.1514

> volume #5 level 0.332

> volume #8 level 0.1653

> volume #8 level 0.1931

> show #!4 models

> hide #!5 models

> show #!6 models

> show #!7 models

> hide #!8 models

> hide #!4 models

> hide #!6 models

> hide #!7 models

> hide #!1 models

> hide #!1.15 models

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_000.mrc

Opened frame_000.mrc as #9, grid size 256,256,256, pixel 1.18, shown at level
0.365, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_001.mrc

Opened frame_001.mrc as #10, grid size 256,256,256, pixel 1.18, shown at level
0.359, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_002.mrc

Opened frame_002.mrc as #11, grid size 256,256,256, pixel 1.18, shown at level
0.354, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_003.mrc

Opened frame_003.mrc as #12, grid size 256,256,256, pixel 1.18, shown at level
0.349, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_004.mrc

Opened frame_004.mrc as #13, grid size 256,256,256, pixel 1.18, shown at level
0.345, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_005.mrc

Opened frame_005.mrc as #14, grid size 256,256,256, pixel 1.18, shown at level
0.342, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_006.mrc

Opened frame_006.mrc as #15, grid size 256,256,256, pixel 1.18, shown at level
0.34, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_007.mrc

Opened frame_007.mrc as #16, grid size 256,256,256, pixel 1.18, shown at level
0.338, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_008.mrc

Opened frame_008.mrc as #17, grid size 256,256,256, pixel 1.18, shown at level
0.336, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_009.mrc

Opened frame_009.mrc as #18, grid size 256,256,256, pixel 1.18, shown at level
0.334, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_010.mrc

Opened frame_010.mrc as #19, grid size 256,256,256, pixel 1.18, shown at level
0.334, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_011.mrc

Opened frame_011.mrc as #20, grid size 256,256,256, pixel 1.18, shown at level
0.333, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_012.mrc

Opened frame_012.mrc as #21, grid size 256,256,256, pixel 1.18, shown at level
0.334, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_013.mrc

Opened frame_013.mrc as #22, grid size 256,256,256, pixel 1.18, shown at level
0.335, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_014.mrc

Opened frame_014.mrc as #23, grid size 256,256,256, pixel 1.18, shown at level
0.338, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_015.mrc

Opened frame_015.mrc as #24, grid size 256,256,256, pixel 1.18, shown at level
0.342, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_016.mrc

Opened frame_016.mrc as #25, grid size 256,256,256, pixel 1.18, shown at level
0.347, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_017.mrc

Opened frame_017.mrc as #26, grid size 256,256,256, pixel 1.18, shown at level
0.352, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_018.mrc

Opened frame_018.mrc as #27, grid size 256,256,256, pixel 1.18, shown at level
0.358, step 1, values float32  

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_019.mrc

Opened frame_019.mrc as #28, grid size 256,256,256, pixel 1.18, shown at level
0.363, step 1, values float32  

> close

> open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_000.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_001.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_002.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_003.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_004.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_005.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_006.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_007.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_008.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_009.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_010.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_011.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_012.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_013.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_014.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_015.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_016.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_017.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_018.mrc
> /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_019.mrc

Opened frame_000.mrc as #1.1, grid size 256,256,256, pixel 1.18, shown at
level 0.365, step 1, values float32  
Opened frame_001.mrc as #1.2, grid size 256,256,256, pixel 1.18, shown at
level 0.359, step 1, values float32  
Opened frame_002.mrc as #1.3, grid size 256,256,256, pixel 1.18, shown at
level 0.354, step 1, values float32  
Opened frame_003.mrc as #1.4, grid size 256,256,256, pixel 1.18, shown at
level 0.349, step 1, values float32  
Opened frame_004.mrc as #1.5, grid size 256,256,256, pixel 1.18, shown at
level 0.345, step 1, values float32  
Opened frame_005.mrc as #1.6, grid size 256,256,256, pixel 1.18, shown at
level 0.342, step 1, values float32  
Opened frame_006.mrc as #1.7, grid size 256,256,256, pixel 1.18, shown at
level 0.34, step 1, values float32  
Opened frame_007.mrc as #1.8, grid size 256,256,256, pixel 1.18, shown at
level 0.338, step 1, values float32  
Opened frame_008.mrc as #1.9, grid size 256,256,256, pixel 1.18, shown at
level 0.336, step 1, values float32  
Opened frame_009.mrc as #1.10, grid size 256,256,256, pixel 1.18, shown at
level 0.334, step 1, values float32  
Opened frame_010.mrc as #1.11, grid size 256,256,256, pixel 1.18, shown at
level 0.334, step 1, values float32  
Opened frame_011.mrc as #1.12, grid size 256,256,256, pixel 1.18, shown at
level 0.333, step 1, values float32  
Opened frame_012.mrc as #1.13, grid size 256,256,256, pixel 1.18, shown at
level 0.334, step 1, values float32  
Opened frame_013.mrc as #1.14, grid size 256,256,256, pixel 1.18, shown at
level 0.335, step 1, values float32  
Opened frame_014.mrc as #1.15, grid size 256,256,256, pixel 1.18, shown at
level 0.338, step 1, values float32  
Opened frame_015.mrc as #1.16, grid size 256,256,256, pixel 1.18, shown at
level 0.342, step 1, values float32  
Opened frame_016.mrc as #1.17, grid size 256,256,256, pixel 1.18, shown at
level 0.347, step 1, values float32  
Opened frame_017.mrc as #1.18, grid size 256,256,256, pixel 1.18, shown at
level 0.352, step 1, values float32  
Opened frame_018.mrc as #1.19, grid size 256,256,256, pixel 1.18, shown at
level 0.358, step 1, values float32  
Opened frame_019.mrc as #1.20, grid size 256,256,256, pixel 1.18, shown at
level 0.363, step 1, values float32  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> vseries slider #1.1-20

Traceback (most recent call last):  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 142, in play_cb  
self.play()  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 148, in play  
s0 = ser[0]  
IndexError: list index out of range  
  
IndexError: list index out of range  
  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 148, in play  
s0 = ser[0]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 142, in play_cb  
self.play()  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 148, in play  
s0 = ser[0]  
IndexError: list index out of range  
  
IndexError: list index out of range  
  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 148, in play  
s0 = ser[0]  
  
See log for complete Python traceback.  
  

> vseries slider #1

Traceback (most recent call last):  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 142, in play_cb  
self.play()  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 148, in play  
s0 = ser[0]  
IndexError: list index out of range  
  
IndexError: list index out of range  
  
File
"/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-
packages/chimerax/map_series/slider.py", line 148, in play  
s0 = ser[0]  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 Metal - 76.1
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro17,1
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache: 8 MB
      Memory: 16 GB

Software:

    System Software Overview:

      System Version: macOS 12.0.1 (21A559)
      Kernel Version: Darwin 21.1.0
      Time since boot: 1 day 1:43

Graphics/Displays:

    Apple G13G:

      Chipset Model: Apple G13G
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 8
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal
        LS32A600U:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 75.00Hz
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes

Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.2
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    matplotlib-inline: 0.1.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0

Change History (2)

comment:1 by pett, 4 years ago

Component: UnassignedVolume Data
Owner: set to Tom Goddard
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionvseries slider: list index out of range

comment:2 by Tom Goddard, 4 years ago

Resolution: duplicate
Status: assignedclosed

Fixed several months ago after 1.2.5 release.
User created vseries slider even though no maps were part of a volume series. New code gives an error message and does not create slider.

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