Opened 4 years ago
Closed 4 years ago
#5563 closed defect (duplicate)
vseries slider: list index out of range
Reported by: | Owned by: | Tom Goddard | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Volume Data | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: macOS-10.16-x86_64-i386-64bit ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.2.5 (2021-05-24) © 2016-2021 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_000.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_001.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_002.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_003.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_004.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_005.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_006.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_007.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_008.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_009.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_010.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_011.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_012.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_013.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_014.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_015.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_016.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_017.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_018.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_019.mrc Opened frame_000.mrc as #1.1, grid size 256,256,256, pixel 1.18, shown at level 0.365, step 1, values float32 Opened frame_001.mrc as #1.2, grid size 256,256,256, pixel 1.18, shown at level 0.359, step 1, values float32 Opened frame_002.mrc as #1.3, grid size 256,256,256, pixel 1.18, shown at level 0.354, step 1, values float32 Opened frame_003.mrc as #1.4, grid size 256,256,256, pixel 1.18, shown at level 0.349, step 1, values float32 Opened frame_004.mrc as #1.5, grid size 256,256,256, pixel 1.18, shown at level 0.345, step 1, values float32 Opened frame_005.mrc as #1.6, grid size 256,256,256, pixel 1.18, shown at level 0.342, step 1, values float32 Opened frame_006.mrc as #1.7, grid size 256,256,256, pixel 1.18, shown at level 0.34, step 1, values float32 Opened frame_007.mrc as #1.8, grid size 256,256,256, pixel 1.18, shown at level 0.338, step 1, values float32 Opened frame_008.mrc as #1.9, grid size 256,256,256, pixel 1.18, shown at level 0.336, step 1, values float32 Opened frame_009.mrc as #1.10, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 Opened frame_010.mrc as #1.11, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 Opened frame_011.mrc as #1.12, grid size 256,256,256, pixel 1.18, shown at level 0.333, step 1, values float32 Opened frame_012.mrc as #1.13, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 Opened frame_013.mrc as #1.14, grid size 256,256,256, pixel 1.18, shown at level 0.335, step 1, values float32 Opened frame_014.mrc as #1.15, grid size 256,256,256, pixel 1.18, shown at level 0.338, step 1, values float32 Opened frame_015.mrc as #1.16, grid size 256,256,256, pixel 1.18, shown at level 0.342, step 1, values float32 Opened frame_016.mrc as #1.17, grid size 256,256,256, pixel 1.18, shown at level 0.347, step 1, values float32 Opened frame_017.mrc as #1.18, grid size 256,256,256, pixel 1.18, shown at level 0.352, step 1, values float32 Opened frame_018.mrc as #1.19, grid size 256,256,256, pixel 1.18, shown at level 0.358, step 1, values float32 Opened frame_019.mrc as #1.20, grid size 256,256,256, pixel 1.18, shown at level 0.363, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J268_003_volume_map_sharp.mrc > format mrc Opened cryosparc_P1_J268_003_volume_map_sharp.mrc as #2, grid size 256,256,256, pixel 1.18, shown at level 0.254, step 1, values float32 > close #2 > ui tool show "Show Volume Menu" > ui tool show "Volume Viewer" > hide #!1.2 models > show #!1.2 models > hide #!1.12 models > show #!1.12 models > hide #!1.17 models > show #!1.17 models > hide #!1 models > show #!1 models > hide #!1.1 models > show #!1.1 models > hide #!1.2 models > hide #!1.1 models > show #!1.2 models > show #!1.1 models > hide #!1.3 models > show #!1.3 models > hide #!1.4 models > show #!1.4 models > ui tool show "Volume Viewer" > show #!1 target m > view #1 clip false > view #1 clip false > select #1 41 models selected > ~select #1 Nothing selected > select #1 41 models selected > ~select #1 Nothing selected > select #1 41 models selected > ~select #1 Nothing selected > select #1.1 2 models selected > select #1.2 2 models selected > ~select #1.2 Nothing selected > ~select #1.1 Nothing selected > ui tool show "Map Statistics" > measure mapstats Map frame_000.mrc #1.1, minimum -0.2439, maximum 0.9396, mean 0.004637, SD 0.06439, RMS 0.06456 Map frame_001.mrc #1.2, minimum -0.2102, maximum 0.9334, mean 0.004662, SD 0.06373, RMS 0.0639 Map frame_002.mrc #1.3, minimum -0.1771, maximum 0.9272, mean 0.004687, SD 0.06314, RMS 0.06331 Map frame_003.mrc #1.4, minimum -0.144, maximum 0.921, mean 0.004712, SD 0.06262, RMS 0.06279 Map frame_004.mrc #1.5, minimum -0.121, maximum 0.9147, mean 0.004738, SD 0.06217, RMS 0.06235 Map frame_005.mrc #1.6, minimum -0.1045, maximum 0.9085, mean 0.004763, SD 0.06179, RMS 0.06197 Map frame_006.mrc #1.7, minimum -0.08942, maximum 0.9023, mean 0.004788, SD 0.06149, RMS 0.06167 Map frame_007.mrc #1.8, minimum -0.08605, maximum 0.8961, mean 0.004813, SD 0.06126, RMS 0.06145 Map frame_008.mrc #1.9, minimum -0.08605, maximum 0.8899, mean 0.004838, SD 0.06111, RMS 0.0613 Map frame_009.mrc #1.10, minimum -0.08606, maximum 0.8837, mean 0.004863, SD 0.06104, RMS 0.06123 Map frame_010.mrc #1.11, minimum -0.08606, maximum 0.8779, mean 0.004889, SD 0.06104, RMS 0.06123 Map frame_011.mrc #1.12, minimum -0.08695, maximum 0.8772, mean 0.004914, SD 0.06112, RMS 0.06132 Map frame_012.mrc #1.13, minimum -0.08964, maximum 0.8807, mean 0.004939, SD 0.06128, RMS 0.06148 Map frame_013.mrc #1.14, minimum -0.09397, maximum 0.8873, mean 0.004964, SD 0.06151, RMS 0.06171 Map frame_014.mrc #1.15, minimum -0.1014, maximum 0.894, mean 0.004989, SD 0.06182, RMS 0.06202 Map frame_015.mrc #1.16, minimum -0.13, maximum 0.9007, mean 0.005015, SD 0.06221, RMS 0.06241 Map frame_016.mrc #1.17, minimum -0.1611, maximum 0.908, mean 0.00504, SD 0.06266, RMS 0.06286 Map frame_017.mrc #1.18, minimum -0.1923, maximum 0.9168, mean 0.005065, SD 0.06319, RMS 0.06339 Map frame_018.mrc #1.19, minimum -0.2234, maximum 0.9256, mean 0.00509, SD 0.06379, RMS 0.06399 Map frame_019.mrc #1.20, minimum -0.2546, maximum 0.9344, mean 0.005115, SD 0.06445, RMS 0.06466 > ui tool show "Volume Viewer" > help help:user > mseries slider #1.1-20 > mseries slider #1 > mseries slider #.1-20 pause 5 step 3 Missing or invalid "models" argument: invalid models specifier > vseries play #1 loop true No volume series specified > vseries slider #1.1-20 > volume #1.1 level 0.2 > show #!1.1 models > hide #!1.1 models > volume #1.2 level 0.2 > hide #!1 models > show #!1 models > volume #1.3 level 0.2 > volume #1.4 level 0.2 > volume #1.5 level 0.2 > volume #1.6 level 0.2 > volume #1.7 level 0.2 > volume #1.8 level 0.2 > volume #1.9 level 0.2 > volume #1.10 level 0.2 > volume #1.11 level 0.2 > volume #1.12 level 0.2 > volume #1.13 level 0.2 > volume #1.14 level 0.2 > volume #1.15 level 0.2 > volume #1.16 level 0.2 > volume #1.17 level 0.2 > volume #1.18 level 0.2 > volume #1.19 level 0.2 > volume #1.20 level 0.2 > movie record > movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0 Movie saved to /Users/uijin/Desktop/movie.mp4 > hide #!1 models > show #!1 models > view #1.1 clip false No displayed objects specified. > hide #!1 models > show #!1 models > view #1 clip false > show #!1 target m > show #!1 target m > show #!1 target m > show #!1.1 models > view #1 clip false > view #1 clip false > show #!1.2 models > show #!1.3 models > show #!1.4 models > hide #!1 models > show #!1 models > hide #!1 target m > hide #!1 target m > show #!1 models > movie record > movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0 Movie saved to /Users/uijin/Desktop/movie.mp4 > movie record > movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0 Movie saved to /Users/uijin/Desktop/movie.mp4 > show #!1.1 models > hide #!1.9 models > show #!1.20 models > hide #!1.20 models > show #!1.20 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.20 models > show #!1.9 models > hide #!1.20 models > movie record > movie encode /Users/uijin/Desktop/movie.mp4 framerate 25.0 Movie saved to /Users/uijin/Desktop/movie.mp4 > open > /Users/uijin/Downloads/cryosparc_P1_J254_class_00_00082_volume_sharp.mrc Opened cryosparc_P1_J254_class_00_00082_volume_sharp.mrc as #2, grid size 128,128,128, pixel 2.37, shown at level 0.864, step 1, values float32 > open > /Users/uijin/Downloads/cryosparc_P1_J254_class_01_00082_volume_sharp.mrc Opened cryosparc_P1_J254_class_01_00082_volume_sharp.mrc as #3, grid size 128,128,128, pixel 2.37, shown at level 0.955, step 1, values float32 > hide #!1 models > volume #2 level 0.3291 > volume #3 level 0.4336 > hide #!2 models > show #!2 models > hide #!3 models > show #!3 models > volume #2 level 0.3702 > volume #2 level 0.3 > volume #3 level 0.3 > volume #3 level 0.5646 > volume #3 level 0.5335 > volume #2 level 0.3493 > hide #!2 models > hide #!3 models > show #!1 models > show #!2 models > show #!3 models > hide #!1.2 models > hide #!3 models > hide #!2 models > show #!3 models > hide #!3 models > open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_000.mrc Opened cryosparc_P1_J301_cluster_000.mrc as #4, grid size 256,256,256, pixel 1.18, shown at level 0.336, step 1, values float32 > hide #!1 models > open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_004.mrc Opened cryosparc_P1_J301_cluster_004.mrc as #5, grid size 256,256,256, pixel 1.18, shown at level 0.354, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_002.mrc Opened cryosparc_P1_J301_cluster_002.mrc as #6, grid size 256,256,256, pixel 1.18, shown at level 0.336, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_001.mrc Opened cryosparc_P1_J301_cluster_001.mrc as #7, grid size 256,256,256, pixel 1.18, shown at level 0.337, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J301_cluster_003.mrc Opened cryosparc_P1_J301_cluster_003.mrc as #8, grid size 256,256,256, pixel 1.18, shown at level 0.354, step 1, values float32 > view clip false > hide #!4 models > hide #!5 models > hide #!6 models > hide #!7 models > show #!7 models > hide #!8 models > show #!6 models > hide #!7 models > show #!5 models > hide #!6 models > show #!4 models > hide #!5 models > hide #!4 models > show #!4 models > show #!5 models > show #!6 models > show #!7 models > show #!8 models > hide #!5 models > select down Nothing selected > select down Nothing selected > select down Nothing selected > select down Nothing selected > select down Nothing selected > select down Nothing selected > hide #!8 models > volume #4 level 0.1525 > volume #6 level 0.1003 > volume #7 level 0.1096 > hide #!6 models > hide #!4 models > show #!4 models > show #!6 models > hide #!7 models > hide #!6 models > show #!1 models > show #!6 models > show #!7 models > hide #!4 models > hide #!6 models > hide #!7 models > show #!5 models > hide #!5 models > show #!8 models > show #!5 models > hide #!8 models > show #!8 models > volume #8 level 0.1514 > volume #5 level 0.332 > volume #8 level 0.1653 > volume #8 level 0.1931 > show #!4 models > hide #!5 models > show #!6 models > show #!7 models > hide #!8 models > hide #!4 models > hide #!6 models > hide #!7 models > hide #!1 models > hide #!1.15 models > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_000.mrc Opened frame_000.mrc as #9, grid size 256,256,256, pixel 1.18, shown at level 0.365, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_001.mrc Opened frame_001.mrc as #10, grid size 256,256,256, pixel 1.18, shown at level 0.359, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_002.mrc Opened frame_002.mrc as #11, grid size 256,256,256, pixel 1.18, shown at level 0.354, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_003.mrc Opened frame_003.mrc as #12, grid size 256,256,256, pixel 1.18, shown at level 0.349, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_004.mrc Opened frame_004.mrc as #13, grid size 256,256,256, pixel 1.18, shown at level 0.345, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_005.mrc Opened frame_005.mrc as #14, grid size 256,256,256, pixel 1.18, shown at level 0.342, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_006.mrc Opened frame_006.mrc as #15, grid size 256,256,256, pixel 1.18, shown at level 0.34, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_007.mrc Opened frame_007.mrc as #16, grid size 256,256,256, pixel 1.18, shown at level 0.338, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_008.mrc Opened frame_008.mrc as #17, grid size 256,256,256, pixel 1.18, shown at level 0.336, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_009.mrc Opened frame_009.mrc as #18, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_010.mrc Opened frame_010.mrc as #19, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_011.mrc Opened frame_011.mrc as #20, grid size 256,256,256, pixel 1.18, shown at level 0.333, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_012.mrc Opened frame_012.mrc as #21, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_013.mrc Opened frame_013.mrc as #22, grid size 256,256,256, pixel 1.18, shown at level 0.335, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_014.mrc Opened frame_014.mrc as #23, grid size 256,256,256, pixel 1.18, shown at level 0.338, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_015.mrc Opened frame_015.mrc as #24, grid size 256,256,256, pixel 1.18, shown at level 0.342, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_016.mrc Opened frame_016.mrc as #25, grid size 256,256,256, pixel 1.18, shown at level 0.347, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_017.mrc Opened frame_017.mrc as #26, grid size 256,256,256, pixel 1.18, shown at level 0.352, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_018.mrc Opened frame_018.mrc as #27, grid size 256,256,256, pixel 1.18, shown at level 0.358, step 1, values float32 > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_019.mrc Opened frame_019.mrc as #28, grid size 256,256,256, pixel 1.18, shown at level 0.363, step 1, values float32 > close > open /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_000.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_001.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_002.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_003.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_004.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_005.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_006.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_007.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_008.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_009.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_010.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_011.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_012.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_013.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_014.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_015.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_016.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_017.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_018.mrc > /Users/uijin/Downloads/cryosparc_P1_J290_component_000/frame_019.mrc Opened frame_000.mrc as #1.1, grid size 256,256,256, pixel 1.18, shown at level 0.365, step 1, values float32 Opened frame_001.mrc as #1.2, grid size 256,256,256, pixel 1.18, shown at level 0.359, step 1, values float32 Opened frame_002.mrc as #1.3, grid size 256,256,256, pixel 1.18, shown at level 0.354, step 1, values float32 Opened frame_003.mrc as #1.4, grid size 256,256,256, pixel 1.18, shown at level 0.349, step 1, values float32 Opened frame_004.mrc as #1.5, grid size 256,256,256, pixel 1.18, shown at level 0.345, step 1, values float32 Opened frame_005.mrc as #1.6, grid size 256,256,256, pixel 1.18, shown at level 0.342, step 1, values float32 Opened frame_006.mrc as #1.7, grid size 256,256,256, pixel 1.18, shown at level 0.34, step 1, values float32 Opened frame_007.mrc as #1.8, grid size 256,256,256, pixel 1.18, shown at level 0.338, step 1, values float32 Opened frame_008.mrc as #1.9, grid size 256,256,256, pixel 1.18, shown at level 0.336, step 1, values float32 Opened frame_009.mrc as #1.10, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 Opened frame_010.mrc as #1.11, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 Opened frame_011.mrc as #1.12, grid size 256,256,256, pixel 1.18, shown at level 0.333, step 1, values float32 Opened frame_012.mrc as #1.13, grid size 256,256,256, pixel 1.18, shown at level 0.334, step 1, values float32 Opened frame_013.mrc as #1.14, grid size 256,256,256, pixel 1.18, shown at level 0.335, step 1, values float32 Opened frame_014.mrc as #1.15, grid size 256,256,256, pixel 1.18, shown at level 0.338, step 1, values float32 Opened frame_015.mrc as #1.16, grid size 256,256,256, pixel 1.18, shown at level 0.342, step 1, values float32 Opened frame_016.mrc as #1.17, grid size 256,256,256, pixel 1.18, shown at level 0.347, step 1, values float32 Opened frame_017.mrc as #1.18, grid size 256,256,256, pixel 1.18, shown at level 0.352, step 1, values float32 Opened frame_018.mrc as #1.19, grid size 256,256,256, pixel 1.18, shown at level 0.358, step 1, values float32 Opened frame_019.mrc as #1.20, grid size 256,256,256, pixel 1.18, shown at level 0.363, step 1, values float32 > select down Nothing selected > select down Nothing selected > select down Nothing selected > select down Nothing selected > select down Nothing selected > select down Nothing selected > select down Nothing selected > vseries slider #1.1-20 Traceback (most recent call last): File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 142, in play_cb self.play() File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 148, in play s0 = ser[0] IndexError: list index out of range IndexError: list index out of range File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 148, in play s0 = ser[0] See log for complete Python traceback. Traceback (most recent call last): File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 142, in play_cb self.play() File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 148, in play s0 = ser[0] IndexError: list index out of range IndexError: list index out of range File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 148, in play s0 = ser[0] See log for complete Python traceback. > vseries slider #1 Traceback (most recent call last): File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 142, in play_cb self.play() File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 148, in play s0 = ser[0] IndexError: list index out of range IndexError: list index out of range File "/private/var/folders/d7/yr3jp9rn6pbc676s_kkn0wq40000gn/T/AppTranslocation/647FDE9D-956C-4F74-BB4E-C8F4321186A2/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site- packages/chimerax/map_series/slider.py", line 148, in play s0 = ser[0] See log for complete Python traceback. OpenGL version: 4.1 Metal - 76.1 OpenGL renderer: Apple M1 OpenGL vendor: AppleHardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro17,1 Processor Name: Unknown Processor Speed: 2.4 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache: 8 MB Memory: 16 GB Software: System Software Overview: System Version: macOS 12.0.1 (21A559) Kernel Version: Darwin 21.1.0 Time since boot: 1 day 1:43 Graphics/Displays: Apple G13G: Chipset Model: Apple G13G Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Family: Supported, Metal GPUFamily Apple 7 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal LS32A600U: Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition) UI Looks like: 2560 x 1440 @ 75.00Hz Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Locale: (None, 'UTF-8') PyQt5 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sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.1 traitlets: 5.0.5 urllib3: 1.25.11 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.36.0 wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
Component: | Unassigned → Volume Data |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → vseries slider: list index out of range |
comment:2 by , 4 years ago
Resolution: | → duplicate |
---|---|
Status: | assigned → closed |
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Fixed several months ago after 1.2.5 release.
User created vseries slider even though no maps were part of a volume series. New code gives an error message and does not create slider.