Cannot save PDB

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19041
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:\\\Users\\\413520\\\Desktop\\\run_it022_half1_class001.mrc

Opened run_it022_half1_class001.mrc as #1, grid size 420,420,420, pixel 0.86,
shown at level 0.00122, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.001305

> volume #1 level 0.001192

> volume #1 level 0.003872

> open "C:/Users/413520/Documents/Structures/(a)
> hElongator/HsElp123_HstRNAGln_DCA.pdb"

Summary of feedback from opening C:/Users/413520/Documents/Structures/(a)
hElongator/HsElp123_HstRNAGln_DCA.pdb  
---  
warning | Ignored bad PDB record found on line 15978  
END  
  
Chain information for HsElp123_HstRNAGln_DCA.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
  

> select #2

15703 atoms, 16219 bonds, 31 pseudobonds, 1858 residues, 3 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.99739,-0.071863,0.0066141,12.101,0.072147,0.9908,-0.11453,10.931,0.0016772,0.11471,0.9934,-19.637

> view matrix models
> #2,0.98703,-0.15893,0.022733,26.44,0.16017,0.96518,-0.2068,18.232,0.010926,0.20776,0.97812,-35.025

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.98703,-0.15893,0.022733,25.868,0.16017,0.96518,-0.2068,18.219,0.010926,0.20776,0.97812,-32.585

> view matrix models
> #2,0.98703,-0.15893,0.022733,26.116,0.16017,0.96518,-0.2068,18.233,0.010926,0.20776,0.97812,-31.3

> view matrix models
> #2,0.98703,-0.15893,0.022733,29.054,0.16017,0.96518,-0.2068,14.348,0.010926,0.20776,0.97812,-37.386

> view matrix models
> #2,0.98703,-0.15893,0.022733,28.004,0.16017,0.96518,-0.2068,13.215,0.010926,0.20776,0.97812,-33.768

> volume flip #1

Opened run_it022_half1_class001.mrc z flip as #3, grid size 420,420,420, pixel
0.86, shown at step 1, values float32  

> view matrix models
> #2,0.98703,-0.15893,0.022733,28.132,0.16017,0.96518,-0.2068,14.748,0.010926,0.20776,0.97812,-38.234

> view matrix models
> #2,0.98703,-0.15893,0.022733,28.074,0.16017,0.96518,-0.2068,12.366,0.010926,0.20776,0.97812,-38.296

> view matrix models
> #2,0.98703,-0.15893,0.022733,26.518,0.16017,0.96518,-0.2068,22.953,0.010926,0.20776,0.97812,-41.327

> view matrix models
> #2,0.98703,-0.15893,0.022733,26.288,0.16017,0.96518,-0.2068,3.2552,0.010926,0.20776,0.97812,-45.07

> view matrix models
> #2,0.99971,-0.0019757,0.024165,-4.3938,0.0064915,0.9821,-0.18826,35.191,-0.02336,0.18836,0.98182,-36.973

> view matrix models
> #2,0.99971,-0.0019757,0.024165,-4.6789,0.0064915,0.9821,-0.18826,48.157,-0.02336,0.18836,0.98182,-37.444

> view matrix models
> #2,0.99626,0.07127,0.048765,-21.729,-0.061387,0.98165,-0.18054,57.665,-0.060737,0.17687,0.98236,-29.519

> view matrix models
> #2,0.98791,-0.133,0.079666,10.6,0.14643,0.96928,-0.19763,24.512,-0.050934,0.20691,0.97703,-36.241

> view matrix models
> #2,0.98791,-0.133,0.079666,10.683,0.14643,0.96928,-0.19763,28.785,-0.050934,0.20691,0.97703,-35.205

> view matrix models
> #2,0.98791,-0.133,0.079666,10.274,0.14643,0.96928,-0.19763,24.086,-0.050934,0.20691,0.97703,-38.479

> view matrix models
> #2,-0.065728,0.98866,0.13505,-32.616,-0.99568,-0.056095,-0.073941,368.07,-0.065526,-0.13933,0.98808,25.311

> view matrix models
> #2,-0.95645,-0.23434,0.17402,321.71,0.215,-0.96884,-0.123,347.5,0.19742,-0.08023,0.97703,-25.23

> view matrix models
> #2,0.30575,-0.9425,0.13496,254.41,0.94878,0.28974,-0.12599,5.3035,0.079645,0.16657,0.98281,-51.744

> view matrix models
> #2,0.95525,-0.2873,0.070445,45.026,0.29245,0.95303,-0.078834,-17.486,-0.044487,0.095907,0.9944,-21.373

> view matrix models
> #2,0.89823,-0.42513,0.11161,71.365,0.43507,0.89607,-0.088211,-28.323,-0.062505,0.12779,0.98983,-23.387

> view matrix models
> #2,0.89823,-0.42513,0.11161,71.572,0.43507,0.89607,-0.088211,-23.74,-0.062505,0.12779,0.98983,-21.484

> view matrix models
> #2,0.98537,-0.15949,0.06001,19.403,0.16508,0.98076,-0.10417,7.0418,-0.042241,0.11256,0.99275,-22.515

> volume flip #1

Opened run_it022_half1_class001.mrc z flip as #4, grid size 420,420,420, pixel
0.86, shown at step 1, values float32  

> view matrix models
> #2,0.98537,-0.15949,0.06001,19.677,0.16508,0.98076,-0.10417,7.5039,-0.042241,0.11256,0.99275,-21.496

> view matrix models
> #2,0.98537,-0.15949,0.06001,20.705,0.16508,0.98076,-0.10417,4.5908,-0.042241,0.11256,0.99275,-21.146

> view matrix models
> #2,0.98537,-0.15949,0.06001,19.547,0.16508,0.98076,-0.10417,-1.8104,-0.042241,0.11256,0.99275,-21.44

> view matrix models
> #2,0.9918,-0.11533,0.055094,11.497,0.12157,0.9843,-0.12799,8.8219,-0.039466,0.13364,0.99024,-25.209

> transparency #3.1#4.1 50

> view matrix models
> #2,0.9918,-0.11533,0.055094,9.3671,0.12157,0.9843,-0.12799,8.4903,-0.039466,0.13364,0.99024,-17.433

> view matrix models
> #2,0.9856,-0.12948,0.10878,3.146,0.16608,0.86233,-0.47834,86.86,-0.031872,0.48952,0.87141,-60.885

> view matrix models
> #2,0.9856,-0.12948,0.10878,0.42846,0.16608,0.86233,-0.47834,91.179,-0.031872,0.48952,0.87141,16.956

> volume #1 level 0.00376

> view matrix models
> #2,0.9856,-0.12948,0.10878,18.511,0.16608,0.86233,-0.47834,92.122,-0.031872,0.48952,0.87141,-30.994

> view matrix models
> #2,0.9856,-0.12948,0.10878,15.372,0.16608,0.86233,-0.47834,95.36,-0.031872,0.48952,0.87141,-41.748

> volume #1 level 0.003957

> view matrix models
> #2,0.9856,-0.12948,0.10878,47.924,0.16608,0.86233,-0.47834,58.971,-0.031872,0.48952,0.87141,-34.553

> view matrix models
> #2,0.9856,-0.12948,0.10878,33.257,0.16608,0.86233,-0.47834,143.03,-0.031872,0.48952,0.87141,-40.73

> view matrix models
> #2,0.9856,-0.12948,0.10878,41.41,0.16608,0.86233,-0.47834,49.815,-0.031872,0.48952,0.87141,-43.728

> view matrix models
> #2,0.9856,-0.12948,0.10878,-14.856,0.16608,0.86233,-0.47834,99.51,-0.031872,0.48952,0.87141,28.354

> view matrix models
> #2,0.9856,-0.12948,0.10878,-13.541,0.16608,0.86233,-0.47834,98.821,-0.031872,0.48952,0.87141,26.874

> view matrix models
> #2,0.9856,-0.12948,0.10878,13.21,0.16608,0.86233,-0.47834,83.601,-0.031872,0.48952,0.87141,31.175

> view matrix models
> #2,0.9856,-0.12948,0.10878,12.948,0.16608,0.86233,-0.47834,83.702,-0.031872,0.48952,0.87141,32.516

> view matrix models
> #2,0.97696,-0.204,-0.06274,58.825,0.16511,0.90868,-0.38346,58.321,0.13524,0.36427,0.92142,19.237

> view matrix models
> #2,0.97696,-0.204,-0.06274,58.901,0.16511,0.90868,-0.38346,58.341,0.13524,0.36427,0.92142,17.452

> view matrix models
> #2,0.98601,-0.16052,0.044813,30.136,0.16363,0.88139,-0.44314,74.303,0.031635,0.44428,0.89533,24.37

> volume #1 level 0.003675

> volume #3 level 0.002321

> transparency #3.1 0

> volume #3 level 0.004409

> view matrix models
> #2,0.98601,-0.16052,0.044813,1.205,0.16363,0.88139,-0.44314,42.975,0.031635,0.44428,0.89533,-96.044

> view matrix models
> #2,0.82659,0.11356,0.55122,-114.44,0.00070095,0.97922,-0.20278,7.7912,-0.5628,0.168,0.80934,63.937

> view matrix models
> #2,0.9516,-0.00061681,0.30733,-69.632,0.1013,0.94475,-0.31176,17.708,-0.29015,0.3278,0.89909,-24.505

> view matrix models
> #2,0.98093,-0.073572,0.17989,-38.096,0.13734,0.9173,-0.37376,28.134,-0.13752,0.39134,0.90991,-62.213

> view matrix models
> #2,0.9854,-0.099285,0.13828,-26.644,0.14678,0.907,-0.39473,32.283,-0.086227,0.40926,0.90833,-73.323

> view matrix models
> #2,0.9854,-0.099285,0.13828,-29.138,0.14678,0.907,-0.39473,29.486,-0.086227,0.40926,0.90833,-84.394

> view matrix models
> #2,0.92541,-0.26609,-0.26984,84.43,0.3686,0.79744,0.47773,-144.64,0.088069,-0.54155,0.83604,71.416

> view matrix models
> #2,0.98765,0.081135,-0.13404,-12.412,0.082196,-0.99661,0.0023894,309.04,-0.1334,-0.013378,-0.99097,343.7

> view matrix models
> #2,0.98505,-0.14244,-0.096891,21.347,-0.14106,-0.98978,0.020965,340.06,-0.098887,-0.0069842,-0.99507,337.79

> view matrix models
> #2,0.98505,-0.14244,-0.096891,59.09,-0.14106,-0.98978,0.020965,349.06,-0.098887,-0.0069842,-0.99507,258.5

> view matrix models
> #2,0.98505,-0.14244,-0.096891,44.789,-0.14106,-0.98978,0.020965,342.61,-0.098887,-0.0069842,-0.99507,264.26

> view matrix models
> #2,0.92911,-0.31946,-0.18631,101.69,-0.31014,-0.94749,0.077962,351.65,-0.20143,-0.014653,-0.97939,279.15

> view matrix models
> #2,0.95467,-0.29327,-0.050978,68.347,-0.28342,-0.9479,0.14547,335.21,-0.090984,-0.12442,-0.98805,282.78

> view matrix models
> #2,0.81513,-0.57926,0.0031386,132.06,-0.57283,-0.80524,0.15314,354.41,-0.08618,-0.12663,-0.9882,282.44

> view matrix models
> #2,0.92471,-0.37538,-0.063275,90.082,-0.36384,-0.9204,0.14309,343.54,-0.11195,-0.10929,-0.98768,283.35

> view matrix models
> #2,0.88947,-0.3049,0.34042,9.7827,-0.017748,-0.76738,-0.64095,403.22,0.45665,0.56406,-0.68797,17.49

> view matrix models
> #2,0.83072,-0.39262,0.39466,25.037,0.18803,-0.46938,-0.86275,357.22,0.52397,0.79091,-0.3161,-101.43

> view matrix models
> #2,0.99647,-0.046776,0.069672,-4.4236,-0.042414,-0.99712,-0.062829,343.4,0.07241,0.059652,-0.99559,225.08

> view matrix models
> #2,0.96811,-0.24189,0.065136,35.91,-0.2394,-0.96993,-0.04377,366.49,0.073765,0.026781,-0.99692,231

> view matrix models
> #2,0.95555,-0.28414,0.078729,43.023,-0.27804,-0.95723,-0.080073,376.97,0.098113,0.054623,-0.99368,221.53

> view matrix models
> #2,0.95555,-0.28414,0.078729,57.663,-0.27804,-0.95723,-0.080073,380.67,0.098113,0.054623,-0.99368,318.87

> transparency #3.1 50

> transparency #3.1 0

> view matrix models
> #2,0.95555,-0.28414,0.078729,57.93,-0.27804,-0.95723,-0.080073,422.56,0.098113,0.054623,-0.99368,316.86

> view matrix models
> #2,0.95555,-0.28414,0.078729,43.243,-0.27804,-0.95723,-0.080073,420.25,0.098113,0.054623,-0.99368,327.79

> view matrix models
> #2,0.95555,-0.28414,0.078729,50.23,-0.27804,-0.95723,-0.080073,422.83,0.098113,0.054623,-0.99368,333.85

> view matrix models
> #2,0.95555,-0.28414,0.078729,52.619,-0.27804,-0.95723,-0.080073,420.11,0.098113,0.054623,-0.99368,335.42

> volume #!3 style mesh

> volume #!3 style mesh

> volume #!3 style surface

> transparency #3.1 50

> transparency #3.1 0

> view matrix models
> #2,0.95555,-0.28414,0.078729,50.954,-0.27804,-0.95723,-0.080073,415.78,0.098113,0.054623,-0.99368,331.62

> view matrix models
> #2,0.95555,-0.28414,0.078729,50.417,-0.27804,-0.95723,-0.080073,414.06,0.098113,0.054623,-0.99368,330.78

> transparency #3.1 0

> view matrix models
> #2,0.9868,-0.14926,0.062877,24.124,-0.144,-0.98624,-0.081211,398.08,0.074133,0.071084,-0.99471,331.84

> view matrix models
> #2,0.9868,-0.14926,0.062877,22.197,-0.144,-0.98624,-0.081211,396.39,0.074133,0.071084,-0.99471,333.48

> view matrix models
> #2,0.9868,-0.14926,0.062877,20.384,-0.144,-0.98624,-0.081211,398.93,0.074133,0.071084,-0.99471,332.81

> view matrix models
> #2,0.99997,-0.0060053,-0.0058083,5.0661,-0.0066335,-0.99334,-0.11499,384.42,-0.0050791,0.11502,-0.99335,337.32

> view matrix models
> #2,0.99859,0.047169,0.024465,-9.7445,0.048402,-0.99745,-0.052505,365.04,0.021926,0.053615,-0.99832,344.92

> ~select #2

Nothing selected  

> ui tool show "Fit in Map"

Fit molecule HsElp123_HstRNAGln_DCA.pdb (#2) to map
run_it022_half1_class001.mrc z flip (#3) using 15703 atoms  
average map value = 0.004357, steps = 72  
shifted from previous position = 2.1  
rotated from previous position = 3.75 degrees  
atoms outside contour = 7406, contour level = 0.0044086  
  
Position of HsElp123_HstRNAGln_DCA.pdb (#2) relative to
run_it022_half1_class001.mrc z flip (#3) coordinates:  
Matrix rotation and translation  
0.99507151 0.08720027 0.04720917 -20.91493604  
0.09146103 -0.99104990 -0.09723625 363.97274882  
0.03830761 0.10107483 -0.99414100 330.63329235  
Axis 0.99876407 0.04483136 0.02145868  
Axis point 0.00000000 174.22045225 174.60572922  
Rotation angle (degrees) 174.30238992  
Shift along axis 2.52326278  
  

DirectWrite: CreateFontFaceFromHDC() failed (Indicates an error in an input
file such as a font file.) for QFontDef(Family="8514oem", pointsize=8.25,
pixelsize=20, styleHint=5, weight=50, stretch=100, hintingPreference=0)
LOGFONT("8514oem", lfWidth=0, lfHeight=-20) dpi=192  

> save "C:/Users/413520/Documents/Structures/(a) hElongator/Cryo
> 24.09.21/HsElp123_htRNAGln_DCA_form1.pdb" relModel #2

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 87, in provider_save  
provider_info.bundle_info.run_provider(session, provider_info.format_name,  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\pdb\\__init__.py", line 73, in save  
pdb.save_pdb(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 193, in save_pdb  
_pdbio.write_pdb_file([m.cpp_pointer for m in models], output, selected_only,  
OSError: Unable to open file 'C:/Users/413520/Documents/Structures/(a)
hElongator/Cryo 24.09.21/HsElp123_htRNAGln_DCA_form1.pdb' for writing  
  
OSError: Unable to open file 'C:/Users/413520/Documents/Structures/(a)
hElongator/Cryo 24.09.21/HsElp123_htRNAGln_DCA_form1.pdb' for writing  
  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 193, in save_pdb  
_pdbio.write_pdb_file([m.cpp_pointer for m in models], output, selected_only,  
  
See log for complete Python traceback.  
  

> save "C:/Users/413520/Documents/Structures/(a) hElongator/Cryo
> 24.09.21/form1_model.pdb"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 87, in provider_save  
provider_info.bundle_info.run_provider(session, provider_info.format_name,  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\pdb\\__init__.py", line 73, in save  
pdb.save_pdb(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 193, in save_pdb  
_pdbio.write_pdb_file([m.cpp_pointer for m in models], output, selected_only,  
OSError: Unable to open file 'C:/Users/413520/Documents/Structures/(a)
hElongator/Cryo 24.09.21/form1_model.pdb' for writing  
  
OSError: Unable to open file 'C:/Users/413520/Documents/Structures/(a)
hElongator/Cryo 24.09.21/form1_model.pdb' for writing  
  
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\pdb\pdb.py", line 193, in save_pdb  
_pdbio.write_pdb_file([m.cpp_pointer for m in models], output, selected_only,  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 27.20.100.8984
OpenGL renderer: Intel(R) UHD Graphics 630
OpenGL vendor: Intel
Manufacturer: HP
Model: HP ProDesk 600 G6 Microtower PC
OS: Microsoft Windows 10 Pro (Build 19042)
Memory: 34,124,038,144
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i5-10500 CPU @ 3.10GHz
OSLanguage: en-GB
Locale: ('en_GB', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.12.5
    cftime: 1.5.0
    chardet: 3.0.4
    ChimeraX-AddCharge: 1.0.1
    ChimeraX-AddH: 2.1.6
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.13.2
    ChimeraX-AtomicLibrary: 3.1.3
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.5.2
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.2.1
    ChimeraX-CommandLine: 1.1.4
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.2.5
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.1.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.3
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.1
    ChimeraX-Help: 1.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.1
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.0.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.2.1
    ChimeraX-MDcrds: 2.2
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.3
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.0.1
    ChimeraX-ModelPanel: 1.0.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.1
    ChimeraX-OpenCommand: 1.5
    ChimeraX-PDB: 2.4.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.0.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.4
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.3.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.7.6
    ChimeraX-uniprot: 2.1
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.21
    decorator: 5.0.9
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.17
    imagecodecs: 2020.5.30
    imagesize: 1.2.0
    ipykernel: 5.3.4
    ipython: 7.18.1
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.7
    jupyter-core: 4.7.1
    kiwisolver: 1.3.1
    line-profiler: 2.1.2
    lxml: 4.6.2
    lz4: 3.1.0
    MarkupSafe: 2.0.1
    matplotlib: 3.3.2
    msgpack: 1.0.0
    netCDF4: 1.5.4
    networkx: 2.5
    numexpr: 2.7.3
    numpy: 1.19.2
    numpydoc: 1.1.0
    openvr: 1.14.1501
    packaging: 20.9
    ParmEd: 3.2.0
    parso: 0.7.1
    pickleshare: 0.7.5
    Pillow: 7.2.0
    pip: 21.0.1
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.18
    psutil: 5.7.2
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.7.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.0.3
    qtconsole: 4.7.7
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.5.2
    setuptools: 50.3.2
    sfftk-rw: 0.6.7.dev1
    six: 1.15.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.2.2
    Sphinx: 3.2.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.9.3
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.0.5
    urllib3: 1.25.11
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.36.0
    wheel-filename: 1.3.0
    WMI: 1.5.1