![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5599 closed defect (duplicate)
Crash setting StructureSeq chain_id
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.5.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [32018]
Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [32018]
User ID: 503
Date/Time: 2021-11-11 16:31:02.287 -0500
OS Version: Mac OS X 10.15.5 (19F101)
Report Version: 12
Bridge OS Version: 4.5 (17P5300)
Anonymous UUID: 3D9A6EBC-02AE-D60B-F2AC-A450291926F7
Sleep/Wake UUID: A49E5456-8480-41D4-958D-914571CB6459
Time Awake Since Boot: 110000 seconds
Time Since Wake: 13000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0:
-->
__TEXT 0000000108fce000-0000000108fcf000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6cdaa33a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6ce66e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6ccc193e raise + 26
3 libsystem_platform.dylib 0x00007fff6ce5b5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libmolc.dylib 0x0000000124ede363 set_sseq_chain_id + 99
6 _ctypes.cpython-37m-darwin.so 0x00000001147dee17 ffi_call_unix64 + 79
7 _ctypes.cpython-37m-darwin.so 0x00000001147df6a5 ffi_call + 901
8 _ctypes.cpython-37m-darwin.so 0x00000001147d9f62 _ctypes_callproc + 882
9 _ctypes.cpython-37m-darwin.so 0x00000001147d36dc PyCFuncPtr_call + 1196
10 org.python.python 0x0000000108ffd6df _PyObject_FastCallKeywords + 575
11 org.python.python 0x00000001090d2bcd call_function + 765
12 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
13 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000108ffd377 _PyFunction_FastCallDict + 455
15 org.python.python 0x0000000108fff6eb object_vacall + 619
16 org.python.python 0x0000000108fff8f0 PyObject_CallFunctionObjArgs + 144
17 org.python.python 0x0000000109005d96 property_descr_set + 38
18 org.python.python 0x000000010903b4af _PyObject_GenericSetAttrWithDict + 159
19 org.python.python 0x000000010903a93c PyObject_SetAttr + 108
20 org.python.python 0x00000001090c77e6 builtin_setattr + 86
21 org.python.python 0x0000000108ffe52d _PyMethodDef_RawFastCallKeywords + 653
22 org.python.python 0x0000000108ffd8b9 _PyCFunction_FastCallKeywords + 41
23 org.python.python 0x00000001090d2b60 call_function + 656
24 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
25 org.python.python 0x0000000108ffdd61 function_code_fastcall + 177
26 org.python.python 0x00000001090d2bd4 call_function + 772
27 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
28 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
29 org.python.python 0x0000000108ffd377 _PyFunction_FastCallDict + 455
30 org.python.python 0x00000001090cfa3a _PyEval_EvalFrameDefault + 27114
31 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
32 org.python.python 0x0000000108ffd879 _PyFunction_FastCallKeywords + 217
33 org.python.python 0x00000001090d2bd4 call_function + 772
34 org.python.python 0x00000001090c95c4 _PyEval_EvalFrameDefault + 1396
35 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
36 org.python.python 0x0000000108ffd879 _PyFunction_FastCallKeywords + 217
37 org.python.python 0x00000001090d2bd4 call_function + 772
38 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
39 org.python.python 0x0000000108ffdd61 function_code_fastcall + 177
40 org.python.python 0x00000001090d2bd4 call_function + 772
41 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
42 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
43 org.python.python 0x0000000108ffd377 _PyFunction_FastCallDict + 455
44 org.python.python 0x0000000108ffe873 _PyObject_Call_Prepend + 131
45 org.python.python 0x0000000108ffd9d8 PyObject_Call + 136
46 org.python.python 0x00000001090cfa3a _PyEval_EvalFrameDefault + 27114
47 org.python.python 0x0000000108ffdd61 function_code_fastcall + 177
48 org.python.python 0x00000001090d2bd4 call_function + 772
49 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
50 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
51 org.python.python 0x0000000108ffd377 _PyFunction_FastCallDict + 455
52 org.python.python 0x00000001090cfa3a _PyEval_EvalFrameDefault + 27114
53 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
54 org.python.python 0x0000000108ffd879 _PyFunction_FastCallKeywords + 217
55 org.python.python 0x00000001090d2bd4 call_function + 772
56 org.python.python 0x00000001090c95c4 _PyEval_EvalFrameDefault + 1396
57 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
58 org.python.python 0x0000000108ffd377 _PyFunction_FastCallDict + 455
59 org.python.python 0x00000001090cfa3a _PyEval_EvalFrameDefault + 27114
60 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
61 org.python.python 0x0000000108ffd879 _PyFunction_FastCallKeywords + 217
62 org.python.python 0x00000001090d2bd4 call_function + 772
63 org.python.python 0x00000001090c95c4 _PyEval_EvalFrameDefault + 1396
64 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
65 org.python.python 0x0000000108ffd879 _PyFunction_FastCallKeywords + 217
66 org.python.python 0x00000001090d2bd4 call_function + 772
67 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
68 org.python.python 0x0000000108ffdd61 function_code_fastcall + 177
69 org.python.python 0x00000001090d2bd4 call_function + 772
70 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
71 org.python.python 0x0000000108ffdd61 function_code_fastcall + 177
72 org.python.python 0x0000000108ffe873 _PyObject_Call_Prepend + 131
73 org.python.python 0x0000000108ffd9d8 PyObject_Call + 136
74 sip.so 0x0000000118cc7f7a call_method + 76
75 sip.so 0x0000000118cc3d07 sip_api_call_procedure_method + 152
76 QtWidgets.so 0x0000000115b53267 sipQMainWindow::dropEvent(QDropEvent*) + 103
77 QtWidgets 0x00000001160797f9 QWidget::event(QEvent*) + 1529
78 QtWidgets 0x000000011618abf5 QMainWindow::event(QEvent*) + 277
79 QtWidgets.so 0x0000000115b51e70 sipQMainWindow::event(QEvent*) + 192
80 QtWidgets 0x000000011603d67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
81 QtWidgets 0x000000011603f80c QApplication::notify(QObject*, QEvent*) + 4060
82 QtWidgets.so 0x0000000115bfd3ca sipQApplication::notify(QObject*, QEvent*) + 234
83 QtCore 0x0000000116d29324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
84 QtWidgets 0x000000011609a305 0x11602d000 + 447237
85 QtWidgets 0x0000000116097896 0x11602d000 + 436374
86 QtWidgets 0x000000011603d67d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
87 QtWidgets 0x000000011603ea82 QApplication::notify(QObject*, QEvent*) + 594
88 QtWidgets.so 0x0000000115bfd3ca sipQApplication::notify(QObject*, QEvent*) + 234
89 QtCore 0x0000000116d29324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
90 QtGui 0x0000000116617da7 QGuiApplicationPrivate::processDrop(QWindow*, QMimeData const*, QPoint const&, QFlags, QFlags, QFlags) + 167
91 QtGui 0x00000001165f7ff7 QWindowSystemInterface::handleDrop(QWindow*, QMimeData const*, QPoint const&, QFlags, QFlags, QFlags) + 247
92 libqcocoa.dylib 0x0000000120b1a656 0x120aec000 + 190038
93 com.apple.AppKit 0x00007fff3025ab48 NSCoreDragReceiveMessageProc + 492
94 com.apple.HIServices 0x00007fff30f2e498 CallReceiveMessageCollectionWithMessage + 103
95 com.apple.HIServices 0x00007fff30f287e3 DoMultipartDropMessage + 113
96 com.apple.HIServices 0x00007fff30f285d1 DoDropMessage + 40
97 com.apple.HIServices 0x00007fff30f2c131 CoreDragMessageHandler + 836
98 com.apple.CoreFoundation 0x00007fff32d0f0ed __CFMessagePortPerform + 634
99 com.apple.CoreFoundation 0x00007fff32c68394 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE1_PERFORM_FUNCTION__ + 41
100 com.apple.CoreFoundation 0x00007fff32c682e0 __CFRunLoopDoSource1 + 541
101 com.apple.CoreFoundation 0x00007fff32c66e09 __CFRunLoopRun + 2270
102 com.apple.CoreFoundation 0x00007fff32c65ece CFRunLoopRunSpecific + 462
103 com.apple.HIToolbox 0x00007fff31894abd RunCurrentEventLoopInMode + 292
104 com.apple.HIToolbox 0x00007fff318947d5 ReceiveNextEventCommon + 584
105 com.apple.HIToolbox 0x00007fff31894579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
106 com.apple.AppKit 0x00007fff2fedc829 _DPSNextEvent + 883
107 com.apple.AppKit 0x00007fff2fedb070 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
108 com.apple.AppKit 0x00007fff2feccd7e -[NSApplication run] + 658
109 libqcocoa.dylib 0x0000000120b21de3 0x120aec000 + 220643
110 QtCore 0x0000000116d2493f QEventLoop::exec(QFlags) + 431
111 QtCore 0x0000000116d29932 QCoreApplication::exec() + 130
112 QtWidgets.so 0x0000000115cec7d2 meth_QApplication_exec_(_object*, _object*) + 82
113 org.python.python 0x0000000108ffe382 _PyMethodDef_RawFastCallKeywords + 226
114 org.python.python 0x0000000108ffd8b9 _PyCFunction_FastCallKeywords + 41
115 org.python.python 0x00000001090d2b60 call_function + 656
116 org.python.python 0x00000001090cf817 _PyEval_EvalFrameDefault + 26567
117 org.python.python 0x0000000108ffdd61 function_code_fastcall + 177
118 org.python.python 0x00000001090d2bd4 call_function + 772
119 org.python.python 0x00000001090cf817 _PyEval_EvalFrameDefault + 26567
120 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
121 org.python.python 0x0000000108ffd879 _PyFunction_FastCallKeywords + 217
122 org.python.python 0x00000001090d2bd4 call_function + 772
123 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
124 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
125 org.python.python 0x00000001090c8fb0 PyEval_EvalCode + 48
126 org.python.python 0x00000001090c6547 builtin_exec + 583
127 org.python.python 0x0000000108ffe52d _PyMethodDef_RawFastCallKeywords + 653
128 org.python.python 0x0000000108ffd8b9 _PyCFunction_FastCallKeywords + 41
129 org.python.python 0x00000001090d2b60 call_function + 656
130 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
131 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
132 org.python.python 0x0000000108ffd879 _PyFunction_FastCallKeywords + 217
133 org.python.python 0x00000001090d2bd4 call_function + 772
134 org.python.python 0x00000001090cf8ae _PyEval_EvalFrameDefault + 26718
135 org.python.python 0x00000001090d3a2c _PyEval_EvalCodeWithName + 3276
136 org.python.python 0x0000000108ffd377 _PyFunction_FastCallDict + 455
137 org.python.python 0x000000010912daf3 pymain_run_module + 147
138 org.python.python 0x000000010912cbdc pymain_main + 5900
139 org.python.python 0x000000010912b4c3 Py_Main + 51
140 edu.ucsf.cgl.ChimeraX 0x0000000108fcedc8 main + 120
141 libdyld.dylib 0x00007fff6cc62cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6cda6882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ce67425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010a9fac3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff6cda6882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ce67425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010a9fac3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff6cda6882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ce67425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x000000010a9fac3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff32c67f85 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff32c66a52 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff32c65ece CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff3007e144 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d422f 0x119532000 + 35267119
4 QtWebEngineCore 0x000000011b68805d 0x119532000 + 34955357
5 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
6 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff6cda8766 kevent + 10
1 QtWebEngineCore 0x000000011b9959a9 0x119532000 + 38156713
2 QtWebEngineCore 0x000000011b992cbd 0x119532000 + 38145213
3 QtWebEngineCore 0x000000011b749cdc 0x119532000 + 35749084
4 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
5 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
6 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
7 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff6cda8766 kevent + 10
1 QtWebEngineCore 0x000000011b9959a9 0x119532000 + 38156713
2 QtWebEngineCore 0x000000011b992cbd 0x119532000 + 38145213
3 QtWebEngineCore 0x000000011b749cc4 0x119532000 + 35749060
4 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
5 QtWebEngineCore 0x000000011b6f2a74 0x119532000 + 35392116
6 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d4421 0x119532000 + 35267617
4 QtWebEngineCore 0x000000011b6ebd28 0x119532000 + 35364136
5 QtWebEngineCore 0x000000011b6ec65b 0x119532000 + 35366491
6 QtWebEngineCore 0x000000011b6ec2c4 0x119532000 + 35365572
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d4421 0x119532000 + 35267617
4 QtWebEngineCore 0x000000011b6ebd28 0x119532000 + 35364136
5 QtWebEngineCore 0x000000011b6ec65b 0x119532000 + 35366491
6 QtWebEngineCore 0x000000011b6ec2c4 0x119532000 + 35365572
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 10:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d4421 0x119532000 + 35267617
4 QtWebEngineCore 0x000000011b6ebd28 0x119532000 + 35364136
5 QtWebEngineCore 0x000000011b6ec65b 0x119532000 + 35366491
6 QtWebEngineCore 0x000000011b6ec234 0x119532000 + 35365428
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 11:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d4421 0x119532000 + 35267617
4 QtWebEngineCore 0x000000011b6ebd28 0x119532000 + 35364136
5 QtWebEngineCore 0x000000011b6ec65b 0x119532000 + 35366491
6 QtWebEngineCore 0x000000011b6ec234 0x119532000 + 35365428
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 12:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6cda8766 kevent + 10
1 QtWebEngineCore 0x000000011b9959a9 0x119532000 + 38156713
2 QtWebEngineCore 0x000000011b992cbd 0x119532000 + 38145213
3 QtWebEngineCore 0x000000011b749cc4 0x119532000 + 35749060
4 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
5 QtWebEngineCore 0x000000011b01ffe4 0x119532000 + 28237796
6 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d422f 0x119532000 + 35267119
4 QtWebEngineCore 0x000000011b6ebd1a 0x119532000 + 35364122
5 QtWebEngineCore 0x000000011b6ec3bf 0x119532000 + 35365823
6 QtWebEngineCore 0x000000011b6ec264 0x119532000 + 35365476
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 14:: CompositorTileWorker1/73987
0 libsystem_kernel.dylib 0x00007fff6cda6882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6ce67425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x000000011b741fa8 0x119532000 + 35717032
3 QtWebEngineCore 0x000000011c6c84c8 0x119532000 + 51995848
4 QtWebEngineCore 0x000000011b702694 0x119532000 + 35456660
5 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
6 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 15:: AudioThread
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d422f 0x119532000 + 35267119
4 QtWebEngineCore 0x000000011b68805d 0x119532000 + 34955357
5 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
6 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 16:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b688052 0x119532000 + 34955346
4 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
5 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
6 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
7 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 17:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6cda8766 kevent + 10
1 QtWebEngineCore 0x000000011b9959a9 0x119532000 + 38156713
2 QtWebEngineCore 0x000000011b992cbd 0x119532000 + 38145213
3 QtWebEngineCore 0x000000011b749cdc 0x119532000 + 35749084
4 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
5 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
6 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
7 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d422f 0x119532000 + 35267119
4 QtWebEngineCore 0x000000011b68805d 0x119532000 + 34955357
5 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
6 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d422f 0x119532000 + 35267119
4 QtWebEngineCore 0x000000011b6ebd1a 0x119532000 + 35364122
5 QtWebEngineCore 0x000000011b6ec65b 0x119532000 + 35366491
6 QtWebEngineCore 0x000000011b6ec324 0x119532000 + 35365668
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6cda3dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6cda4170 mach_msg + 60
2 QtWebEngineCore 0x000000011b6d432d 0x119532000 + 35267373
3 QtWebEngineCore 0x000000011b6d422f 0x119532000 + 35267119
4 QtWebEngineCore 0x000000011b68805d 0x119532000 + 34955357
5 QtWebEngineCore 0x000000011b6b1085 0x119532000 + 35123333
6 QtWebEngineCore 0x000000011b7039bc 0x119532000 + 35461564
7 QtWebEngineCore 0x000000011b743717 0x119532000 + 35723031
8 libsystem_pthread.dylib 0x00007fff6ce67109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6ce62b8b thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff6ce62b68 start_wqthread + 0
Thread 22:
0 libsystem_pthread.dylib 0x00007fff6ce62b68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000109782dc0 rcx: 0x00007f9461f77a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007f9461f77a80 rsp: 0x00007f9461f77a58
r8: 0x00007f9461f77f48 r9: 0x6101971bf9810393 r10: 0x0000000109782dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000008 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff6cdaa33a rfl: 0x0000000000000246 cr2: 0x0000000109238fa4
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x109e50000 - 0x109e8eff7 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
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0x1157ba000 - 0x1157d3ffb +vbo.cpython-37m-darwin.so (0) /Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/PyOpenGL_accelerate-3.1.5-py3.7-macosx-10.13-x86_64.egg/OpenGL_accelerate/vbo.cpython-37m-darwin.so
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0x7fff629a3000 - 0x7fff629b1ffb com.apple.SpeechRecognitionCore (6.0.91.2 - 6.0.91.2) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore
0x7fff62a73000 - 0x7fff62cfdffe com.apple.spotlight.index (10.7.0 - 2076.6) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex
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0x7fff634a3000 - 0x7fff634b3ff3 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff639d8000 - 0x7fff63a9eff0 com.apple.TextureIO (3.10.9 - 3.10.9) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
0x7fff63c2a000 - 0x7fff63c2bfff com.apple.TrustEvaluationAgent (2.0 - 33) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff63c63000 - 0x7fff63ebbff0 com.apple.UIFoundation (1.0 - 662) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
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0x7fff65b8a000 - 0x7fff65b8bfff com.apple.WatchdogClient.framework (1.0 - 67.120.2) /System/Library/PrivateFrameworks/WatchdogClient.framework/Versions/A/WatchdogClient
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0x7fff66234000 - 0x7fff66245fff libprotobuf-lite.dylib (3541.1) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf-lite.dylib
0x7fff66246000 - 0x7fff6629fffb libprotobuf.dylib (3541.1) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib
0x7fff662a0000 - 0x7fff662e4ff6 com.apple.awd (1.0 - 949) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/WirelessDiagnostics
0x7fff667b8000 - 0x7fff667bbffa com.apple.dt.XCTTargetBootstrap (1.0 - 16091) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap
0x7fff66835000 - 0x7fff66843ff5 com.apple.audio.caulk (1.0 - 32.3) /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk
0x7fff66a0b000 - 0x7fff66a40ffe com.apple.iCalendar (7.0 - 810.4.1) /System/Library/PrivateFrameworks/iCalendar.framework/Versions/A/iCalendar
0x7fff66b85000 - 0x7fff66b87ff3 com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff66b88000 - 0x7fff66b9bffd com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff66bcd000 - 0x7fff66bd9ffd com.apple.perfdata (1.0 - 51.100.6) /System/Library/PrivateFrameworks/perfdata.framework/Versions/A/perfdata
0x7fff66bda000 - 0x7fff66c0bffd com.apple.contacts.vCard (1.0 - 3455.18) /System/Library/PrivateFrameworks/vCard.framework/Versions/A/vCard
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0x7fff6965e000 - 0x7fff6966aff9 libAudioStatistics.dylib (1104.84) /usr/lib/libAudioStatistics.dylib
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0x7fff696dc000 - 0x7fff696e6fff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib
0x7fff696e7000 - 0x7fff6976ffff libCoreStorage.dylib (551) /usr/lib/libCoreStorage.dylib
0x7fff69772000 - 0x7fff69774ff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff697ba000 - 0x7fff69971ffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib
0x7fff69998000 - 0x7fff6999eff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib
0x7fff69a80000 - 0x7fff69a87fff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib
0x7fff69ab6000 - 0x7fff69ad6fff libMobileGestalt.dylib (826.120.5) /usr/lib/libMobileGestalt.dylib
0x7fff69b56000 - 0x7fff69c33ff7 libSMC.dylib (20) /usr/lib/libSMC.dylib
0x7fff69c48000 - 0x7fff69c49fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib
0x7fff69c4a000 - 0x7fff69cd5ff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib
0x7fff69cd6000 - 0x7fff69cd7fff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib
0x7fff69cef000 - 0x7fff69d05fff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib
0x7fff69d3a000 - 0x7fff69dacff7 libarchive.2.dylib (72.100.1) /usr/lib/libarchive.2.dylib
0x7fff69dad000 - 0x7fff69e46fe5 libate.dylib (3.0.1) /usr/lib/libate.dylib
0x7fff69e4a000 - 0x7fff69e4aff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff69e4b000 - 0x7fff69f0fffe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib
0x7fff69f10000 - 0x7fff69f20ffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib
0x7fff69f21000 - 0x7fff69f2dfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff69f2e000 - 0x7fff69f80fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib
0x7fff69f81000 - 0x7fff69f96ffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib
0x7fff69f97000 - 0x7fff69f97fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib
0x7fff69f98000 - 0x7fff69fa9fff libcmph.dylib (8) /usr/lib/libcmph.dylib
0x7fff69faa000 - 0x7fff69fc1fd7 libcompression.dylib (87) /usr/lib/libcompression.dylib
0x7fff6a29b000 - 0x7fff6a2b1ff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib
0x7fff6a2b2000 - 0x7fff6a2b3fff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff6a756000 - 0x7fff6a85afef libcrypto.44.dylib (47.120.1) /usr/lib/libcrypto.44.dylib
0x7fff6a85d000 - 0x7fff6a868fff libcsfde.dylib (551) /usr/lib/libcsfde.dylib
0x7fff6a870000 - 0x7fff6a8cfff7 libcups.2.dylib (483.6) /usr/lib/libcups.2.dylib
0x7fff6a8d1000 - 0x7fff6a936ff7 libcurl.4.dylib (118.120.2) /usr/lib/libcurl.4.dylib
0x7fff6a9d9000 - 0x7fff6a9d9fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib
0x7fff6a9da000 - 0x7fff6a9f2fff libexpat.1.dylib (19.60.2) /usr/lib/libexpat.1.dylib
0x7fff6aa00000 - 0x7fff6aa02fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff6aa11000 - 0x7fff6aa16fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib
0x7fff6aa17000 - 0x7fff6aa20ff7 libheimdal-asn1.dylib (564.100.1) /usr/lib/libheimdal-asn1.dylib
0x7fff6aa21000 - 0x7fff6ab11fff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff6ab12000 - 0x7fff6ad69fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib
0x7fff6ad83000 - 0x7fff6ad84fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff6ad85000 - 0x7fff6ad9dff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff6adb5000 - 0x7fff6ae5cff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff6ae5d000 - 0x7fff6b0bfff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff6b42c000 - 0x7fff6b45bfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6b58b000 - 0x7fff6ba07ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff6ba08000 - 0x7fff6ba1ffff libnetworkextension.dylib (1095.120.6) /usr/lib/libnetworkextension.dylib
0x7fff6baa8000 - 0x7fff6badbfde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff6badc000 - 0x7fff6baddff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff6baee000 - 0x7fff6baf2fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff6baf5000 - 0x7fff6bb2bff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib
0x7fff6bb6b000 - 0x7fff6bb79ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff6bbaf000 - 0x7fff6bbc7fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff6bbc9000 - 0x7fff6bc0dff7 libsandbox.1.dylib (1217.120.7) /usr/lib/libsandbox.1.dylib
0x7fff6bc0e000 - 0x7fff6bc20ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff6bc21000 - 0x7fff6bc22ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff6bc23000 - 0x7fff6be0dff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
0x7fff6bf01000 - 0x7fff6bf2effb libssl.46.dylib (47.120.1) /usr/lib/libssl.46.dylib
0x7fff6bfb0000 - 0x7fff6bfe1ff7 libtidy.A.dylib (17.1) /usr/lib/libtidy.A.dylib
0x7fff6c003000 - 0x7fff6c05dff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff6c05e000 - 0x7fff6c061ffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff6c062000 - 0x7fff6c06fff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff6c075000 - 0x7fff6c157ff7 libxml2.2.dylib (33.3) /usr/lib/libxml2.2.dylib
0x7fff6c15b000 - 0x7fff6c183fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff6c184000 - 0x7fff6c196ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff6ca44000 - 0x7fff6ca49ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff6ca4a000 - 0x7fff6ca55fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff6ca56000 - 0x7fff6ca5dfff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6ca5e000 - 0x7fff6ca67ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6ca68000 - 0x7fff6cafafe3 libcorecrypto.dylib (866.120.3) /usr/lib/system/libcorecrypto.dylib
0x7fff6cc07000 - 0x7fff6cc47ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6cc48000 - 0x7fff6cc7efff libdyld.dylib (750.5) /usr/lib/system/libdyld.dylib
0x7fff6cc7f000 - 0x7fff6cc7fffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6cc80000 - 0x7fff6cc8cff3 libkxld.dylib (6153.121.2) /usr/lib/system/libkxld.dylib
0x7fff6cc8d000 - 0x7fff6cc8dff7 liblaunch.dylib (1738.120.8) /usr/lib/system/liblaunch.dylib
0x7fff6cc8e000 - 0x7fff6cc93ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6cc94000 - 0x7fff6cc96ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff6cc97000 - 0x7fff6cc98ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6cc99000 - 0x7fff6ccb0ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff6ccb1000 - 0x7fff6ccb1ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6ccb2000 - 0x7fff6cd39fff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff6cd3a000 - 0x7fff6cd3dffb libsystem_configuration.dylib (1061.120.2) /usr/lib/system/libsystem_configuration.dylib
0x7fff6cd3e000 - 0x7fff6cd41fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6cd42000 - 0x7fff6cd4afff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff6cd4b000 - 0x7fff6cd52fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6cd53000 - 0x7fff6cd54ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6cd55000 - 0x7fff6cda2ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6cda3000 - 0x7fff6cdcfff7 libsystem_kernel.dylib (6153.121.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff6cdd0000 - 0x7fff6ce17fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6ce18000 - 0x7fff6ce3ffff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6ce40000 - 0x7fff6ce4dffb libsystem_networkextension.dylib (1095.120.6) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6ce4e000 - 0x7fff6ce57ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6ce58000 - 0x7fff6ce60fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6ce61000 - 0x7fff6ce6bfff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6ce6c000 - 0x7fff6ce70ff3 libsystem_sandbox.dylib (1217.120.7) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6ce71000 - 0x7fff6ce73fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6ce74000 - 0x7fff6ce7bffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6ce7c000 - 0x7fff6ce92ff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff6ce94000 - 0x7fff6ce99ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6ce9a000 - 0x7fff6cecfffe libxpc.dylib (1738.120.8) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 15
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 459100
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 520K 28
CoreAnimation 4136K 78
CoreGraphics 8K 1
CoreImage 24K 2
CoreUI image data 3428K 30
Foundation 24K 2
Kernel Alloc Once 8K 1
MALLOC 555.2M 354
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
Memory Tag 251 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 88K 22
Stack 139.2M 23
Stack Guard 56.0M 1
VM_ALLOCATE 152.5M 292
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 62.4M 611
__DATA_CONST 65K 6
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 412.8M 135
__OBJC_RO 32.2M 1
__OBJC_RW 1892K 2
__TEXT 606.2M 572
__UNICODE 564K 1
mapped file 139.3M 62
shared memory 656K 18
=========== ======= =======
TOTAL 2.3G 2270
TOTAL, minus reserved VM space 2.1G 2270
System Profile:
Network Service: USB 10/100/1000 LAN, Ethernet, en7
Network Service: Wi-Fi, AirPort, en0
bridge_os_version: Bridge OS 4.5 (17P5300)
Boot Volume File System Type: apfs
bridge_model: iBridge2,4
Memory Module: BANK 0/ChannelA-DIMM0, 8 GB, LPDDR3, 2133 MHz, Micron, -
Memory Module: BANK 2/ChannelB-DIMM0, 8 GB, LPDDR3, 2133 MHz, Micron, -
USB Device: USB 10/100/1000 LAN
USB Device: USB3.0 Hub
USB Device: USB 3.1 Bus
USB Device: USB2.0 Hub
USB Device: Razer DeathAdder Essential
USB Device: USB 2.0 BILLBOARD
USB Device: USB2.1 Hub
USB Device: USB2.1 Hub
USB Device: EA271U
USB Device: Apple T2 Bus
USB Device: Touch Bar Backlight
USB Device: Touch Bar Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 47.4
Thunderbolt Bus: MacBook Pro, Apple Inc., 47.4
Model: MacBookPro15,2, BootROM 1037.120.87.0.0 (iBridge: 17.16.15300.0.0,0), 4 processors, Quad-Core Intel Core i5, 2.3 GHz, 16 GB, SMC
Graphics: kHW_IntelIrisGraphics655Item, Intel Iris Plus Graphics 655, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Feb 28 2020 15:24:56 version 9.30.357.35.32.5.47 FWID 01-9ce4adf3
Bluetooth: Version 7.0.5f6, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/kbui2/Downloads/tubulin_DMT_pdb/chimeraX_convert2cif.cxc
> open Tubulin_A5_EL.pdb
Summary of feedback from opening Tubulin_A5_EL.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A5_EL.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id EL
Assigning chain_id attribute to 1 item
> setattr /B r chain_id EL
Assigning chain_id attribute to 1 item
> save Tubulin_A5_EL.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EM.pdb
Summary of feedback from opening Tubulin_A5_EM.pdb
---
warnings | Ignored bad PDB record found on line 3536
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A5_EM.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id EM
Assigning chain_id attribute to 1 item
> setattr /A r chain_id EM
Assigning chain_id attribute to 2 items
> save Tubulin_A5_EM.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EN.pdb
Summary of feedback from opening Tubulin_A5_EN.pdb
---
warnings | Ignored bad PDB record found on line 3503
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A5_EN.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id EN
Assigning chain_id attribute to 1 item
> setattr /B r chain_id EN
Assigning chain_id attribute to 1 item
> save Tubulin_A5_EN.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EJ.pdb
Summary of feedback from opening Tubulin_A5_EJ.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A5_EJ.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id EJ
Assigning chain_id attribute to 1 item
> setattr /B r chain_id EJ
Assigning chain_id attribute to 1 item
> save Tubulin_A5_EJ.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EK.pdb
Summary of feedback from opening Tubulin_A5_EK.pdb
---
warnings | Ignored bad PDB record found on line 3536
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A5_EK.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id EK
Assigning chain_id attribute to 1 item
> setattr /A r chain_id EK
Assigning chain_id attribute to 2 items
> save Tubulin_A5_EK.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EI.pdb
Summary of feedback from opening Tubulin_A5_EI.pdb
---
warnings | Ignored bad PDB record found on line 3536
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A5_EI.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id EI
Assigning chain_id attribute to 1 item
> setattr /A r chain_id EI
Assigning chain_id attribute to 2 items
> save Tubulin_A5_EI.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EH.pdb
Summary of feedback from opening Tubulin_A5_EH.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A5_EH.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id EH
Assigning chain_id attribute to 1 item
> setattr /B r chain_id EH
Assigning chain_id attribute to 1 item
> save Tubulin_A5_EH.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FN.pdb
Summary of feedback from opening Tubulin_A6_FN.pdb
---
warnings | Ignored bad PDB record found on line 3482
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
25 messages similar to the above omitted
Chain information for Tubulin_A6_FN.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id FN
Assigning chain_id attribute to 1 item
> setattr /B r chain_id FN
Assigning chain_id attribute to 1 item
> save Tubulin_A6_FN.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NL.pdb
Summary of feedback from opening Tubulin_B1_NL.pdb
---
warnings | Ignored bad PDB record found on line 3502
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NL.pdb #1
---
Chain | Description
I | No description available
> setattr /I c chain_id NL
Assigning chain_id attribute to 1 item
> setattr /I r chain_id NL
Assigning chain_id attribute to 1 item
> save Tubulin_B1_NL.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NM.pdb
Summary of feedback from opening Tubulin_B1_NM.pdb
---
warnings | Ignored bad PDB record found on line 3558
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NM.pdb #1
---
Chain | Description
E | No description available
> setattr /E c chain_id NM
Assigning chain_id attribute to 1 item
> setattr /E r chain_id NM
Assigning chain_id attribute to 2 items
> save Tubulin_B1_NM.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FM.pdb
Summary of feedback from opening Tubulin_A6_FM.pdb
---
warnings | Ignored bad PDB record found on line 3469
END
Start residue of secondary structure not found: HELIX 18 18 GLY B 10 GLU B 27
1 18
Start residue of secondary structure not found: HELIX 19 19 PRO B 70 ALA B 78
1 9
Start residue of secondary structure not found: HELIX 20 20 PRO B 87 ASN B 89
1 3
Start residue of secondary structure not found: HELIX 21 21 TRP B 101 THR B
107 1 7
Start residue of secondary structure not found: HELIX 22 22 ILE B 113 GLU B
125 1 13
25 messages similar to the above omitted
Chain information for Tubulin_A6_FM.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id FM
Assigning chain_id attribute to 1 item
> setattr /A r chain_id FM
Assigning chain_id attribute to 2 items
> save Tubulin_A6_FM.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NN.pdb
Summary of feedback from opening Tubulin_B1_NN.pdb
---
warnings | Ignored bad PDB record found on line 3501
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NN.pdb #1
---
Chain | Description
K | No description available
> setattr /K c chain_id NN
Assigning chain_id attribute to 1 item
> setattr /K r chain_id NN
Assigning chain_id attribute to 1 item
> save Tubulin_B1_NN.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FL.pdb
Summary of feedback from opening Tubulin_A6_FL.pdb
---
warnings | Ignored bad PDB record found on line 3482
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
25 messages similar to the above omitted
Chain information for Tubulin_A6_FL.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id FL
Assigning chain_id attribute to 1 item
> setattr /B r chain_id FL
Assigning chain_id attribute to 1 item
> save Tubulin_A6_FL.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FH.pdb
Summary of feedback from opening Tubulin_A6_FH.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A6_FH.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id FH
Assigning chain_id attribute to 1 item
> setattr /B r chain_id FH
Assigning chain_id attribute to 1 item
> save Tubulin_A6_FH.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NJ.pdb
Summary of feedback from opening Tubulin_B1_NJ.pdb
---
warnings | Ignored bad PDB record found on line 3528
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NJ.pdb #1
---
Chain | Description
D | No description available
> setattr /D c chain_id NJ
Assigning chain_id attribute to 1 item
> setattr /D r chain_id NJ
Assigning chain_id attribute to 1 item
> save Tubulin_B1_NJ.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NK.pdb
Summary of feedback from opening Tubulin_B1_NK.pdb
---
warnings | Ignored bad PDB record found on line 3558
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NK.pdb #1
---
Chain | Description
C | No description available
> setattr /C c chain_id NK
Assigning chain_id attribute to 1 item
> setattr /C r chain_id NK
Assigning chain_id attribute to 2 items
> save Tubulin_B1_NK.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FI.pdb
Summary of feedback from opening Tubulin_A6_FI.pdb
---
warnings | Ignored bad PDB record found on line 3469
END
Start residue of secondary structure not found: HELIX 18 18 GLY B 10 GLU B 27
1 18
Start residue of secondary structure not found: HELIX 19 19 PRO B 70 ALA B 78
1 9
Start residue of secondary structure not found: HELIX 20 20 PRO B 87 ASN B 89
1 3
Start residue of secondary structure not found: HELIX 21 21 TRP B 101 THR B
107 1 7
Start residue of secondary structure not found: HELIX 22 22 ILE B 113 GLU B
125 1 13
25 messages similar to the above omitted
Chain information for Tubulin_A6_FI.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id FI
Assigning chain_id attribute to 1 item
> setattr /A r chain_id FI
Assigning chain_id attribute to 2 items
> save Tubulin_A6_FI.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FK.pdb
Summary of feedback from opening Tubulin_A6_FK.pdb
---
warnings | Ignored bad PDB record found on line 3469
END
Start residue of secondary structure not found: HELIX 18 18 GLY B 10 GLU B 27
1 18
Start residue of secondary structure not found: HELIX 19 19 PRO B 70 ALA B 78
1 9
Start residue of secondary structure not found: HELIX 20 20 PRO B 87 ASN B 89
1 3
Start residue of secondary structure not found: HELIX 21 21 TRP B 101 THR B
107 1 7
Start residue of secondary structure not found: HELIX 22 22 ILE B 113 GLU B
125 1 13
25 messages similar to the above omitted
Chain information for Tubulin_A6_FK.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id FK
Assigning chain_id attribute to 1 item
> setattr /A r chain_id FK
Assigning chain_id attribute to 2 items
> save Tubulin_A6_FK.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NI.pdb
Summary of feedback from opening Tubulin_B1_NI.pdb
---
warnings | Ignored bad PDB record found on line 3558
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NI.pdb #1
---
Chain | Description
F | No description available
> setattr /F c chain_id NI
Assigning chain_id attribute to 1 item
> setattr /F r chain_id NI
Assigning chain_id attribute to 2 items
> save Tubulin_B1_NI.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NH.pdb
Summary of feedback from opening Tubulin_B1_NH.pdb
---
warnings | Ignored bad PDB record found on line 3502
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NH.pdb #1
---
Chain | Description
L | No description available
> setattr /L c chain_id NH
Assigning chain_id attribute to 1 item
> setattr /L r chain_id NH
Assigning chain_id attribute to 1 item
> save Tubulin_B1_NH.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FJ.pdb
Summary of feedback from opening Tubulin_A6_FJ.pdb
---
warnings | Ignored bad PDB record found on line 3482
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
25 messages similar to the above omitted
Chain information for Tubulin_A6_FJ.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id FJ
Assigning chain_id attribute to 1 item
> setattr /B r chain_id FJ
Assigning chain_id attribute to 1 item
> save Tubulin_A6_FJ.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FG.pdb
Summary of feedback from opening Tubulin_A6_FG.pdb
---
warnings | Ignored bad PDB record found on line 3520
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A6_FG.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id FG
Assigning chain_id attribute to 1 item
> setattr /A r chain_id FG
Assigning chain_id attribute to 2 items
> save Tubulin_A6_FG.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NE.pdb
Summary of feedback from opening Tubulin_B1_NE.pdb
---
warnings | Ignored bad PDB record found on line 3557
END
Start residue of secondary structure not found: HELIX 18 18 GLY B 10 GLU B 27
1 18
Start residue of secondary structure not found: HELIX 19 19 PRO B 70 ALA B 78
1 9
Start residue of secondary structure not found: HELIX 20 20 PRO B 87 ASN B 89
1 3
Start residue of secondary structure not found: HELIX 21 21 TRP B 101 THR B
107 1 7
Start residue of secondary structure not found: HELIX 22 22 ILE B 113 GLU B
125 1 13
25 messages similar to the above omitted
Chain information for Tubulin_B1_NE.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id NE
Assigning chain_id attribute to 1 item
> setattr /A r chain_id NE
Assigning chain_id attribute to 2 items
> save Tubulin_B1_NE.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_ND.pdb
Summary of feedback from opening Tubulin_B1_ND.pdb
---
warnings | Ignored bad PDB record found on line 3502
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
25 messages similar to the above omitted
Chain information for Tubulin_B1_ND.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id ND
Assigning chain_id attribute to 1 item
> setattr /B r chain_id ND
Assigning chain_id attribute to 1 item
> save Tubulin_B1_ND.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FF.pdb
Summary of feedback from opening Tubulin_A6_FF.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A6_FF.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id FF
Assigning chain_id attribute to 1 item
> setattr /B r chain_id FF
Assigning chain_id attribute to 1 item
> save Tubulin_A6_FF.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FD.pdb
Summary of feedback from opening Tubulin_A6_FD.pdb
---
warnings | Ignored bad PDB record found on line 3482
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
25 messages similar to the above omitted
Chain information for Tubulin_A6_FD.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id FD
Assigning chain_id attribute to 1 item
> setattr /B r chain_id FD
Assigning chain_id attribute to 1 item
> save Tubulin_A6_FD.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NF.pdb
Summary of feedback from opening Tubulin_B1_NF.pdb
---
warnings | Ignored bad PDB record found on line 3502
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NF.pdb #1
---
Chain | Description
J | No description available
> setattr /J c chain_id NF
Assigning chain_id attribute to 1 item
> setattr /J r chain_id NF
Assigning chain_id attribute to 1 item
> save Tubulin_B1_NF.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NG.pdb
Summary of feedback from opening Tubulin_B1_NG.pdb
---
warning | Ignored bad PDB record found on line 3558
END
Chain information for Tubulin_B1_NG.pdb #1
---
Chain | Description
G | No description available
> setattr /G c chain_id NG
Assigning chain_id attribute to 1 item
> setattr /G r chain_id NG
Assigning chain_id attribute to 2 items
> save Tubulin_B1_NG.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FE.pdb
Summary of feedback from opening Tubulin_A6_FE.pdb
---
warnings | Ignored bad PDB record found on line 3520
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A6_FE.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id FE
Assigning chain_id attribute to 1 item
> setattr /A r chain_id FE
Assigning chain_id attribute to 2 items
> save Tubulin_A6_FE.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NC.pdb
Summary of feedback from opening Tubulin_B1_NC.pdb
---
warnings | Ignored bad PDB record found on line 3558
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NC.pdb #1
---
Chain | Description
H | No description available
> setattr /H c chain_id NC
Assigning chain_id attribute to 1 item
> setattr /H r chain_id NC
Assigning chain_id attribute to 2 items
> save Tubulin_B1_NC.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NB.pdb
Summary of feedback from opening Tubulin_B1_NB.pdb
---
warnings | Ignored bad PDB record found on line 3502
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NB.pdb #1
---
Chain | Description
K | No description available
> setattr /K c chain_id NB
Assigning chain_id attribute to 1 item
> setattr /K r chain_id NB
Assigning chain_id attribute to 1 item
> save Tubulin_B1_NB.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FB.pdb
Summary of feedback from opening Tubulin_A6_FB.pdb
---
warnings | Ignored bad PDB record found on line 3482
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
25 messages similar to the above omitted
Chain information for Tubulin_A6_FB.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id FB
Assigning chain_id attribute to 1 item
> setattr /B r chain_id FB
Assigning chain_id attribute to 1 item
> save Tubulin_A6_FB.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_B1_NA.pdb
Summary of feedback from opening Tubulin_B1_NA.pdb
---
warnings | Ignored bad PDB record found on line 3557
END
Start residue of secondary structure not found: HELIX 1 1 GLY A 12 GLU A 27 1
16
Start residue of secondary structure not found: HELIX 2 2 PRO A 72 THR A 80 1
9
Start residue of secondary structure not found: HELIX 3 3 ALA A 104 HIS A 107
1 4
Start residue of secondary structure not found: HELIX 4 4 GLY A 111 ASP A 127
1 17
Start residue of secondary structure not found: HELIX 5 5 THR A 145 SER A 158
1 14
55 messages similar to the above omitted
Chain information for Tubulin_B1_NA.pdb #1
---
Chain | Description
E | No description available
> setattr /E c chain_id NA
Assigning chain_id attribute to 1 item
> setattr /E r chain_id NA
Assigning chain_id attribute to 2 items
> save Tubulin_B1_NA.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A6_FC.pdb
Summary of feedback from opening Tubulin_A6_FC.pdb
---
warnings | Ignored bad PDB record found on line 3469
END
Start residue of secondary structure not found: HELIX 18 18 GLY B 10 GLU B 27
1 18
Start residue of secondary structure not found: HELIX 19 19 PRO B 70 ALA B 78
1 9
Start residue of secondary structure not found: HELIX 20 20 PRO B 87 ASN B 89
1 3
Start residue of secondary structure not found: HELIX 21 21 TRP B 101 THR B
107 1 7
Start residue of secondary structure not found: HELIX 22 22 ILE B 113 GLU B
125 1 13
25 messages similar to the above omitted
Chain information for Tubulin_A6_FC.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id FC
Assigning chain_id attribute to 1 item
> setattr /A r chain_id FC
Assigning chain_id attribute to 2 items
> save Tubulin_A6_FC.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EE.pdb
Summary of feedback from opening Tubulin_A5_EE.pdb
---
warnings | Ignored bad PDB record found on line 3536
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A5_EE.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id EE
Assigning chain_id attribute to 1 item
> setattr /A r chain_id EE
Assigning chain_id attribute to 2 items
> save Tubulin_A5_EE.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_ED.pdb
Summary of feedback from opening Tubulin_A5_ED.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A5_ED.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id ED
Assigning chain_id attribute to 1 item
> setattr /B r chain_id ED
Assigning chain_id attribute to 1 item
> save Tubulin_A5_ED.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EF.pdb
Summary of feedback from opening Tubulin_A5_EF.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A5_EF.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id EF
Assigning chain_id attribute to 1 item
> setattr /B r chain_id EF
Assigning chain_id attribute to 1 item
> save Tubulin_A5_EF.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EG.pdb
Summary of feedback from opening Tubulin_A5_EG.pdb
---
warnings | Ignored bad PDB record found on line 3536
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A5_EG.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id EG
Assigning chain_id attribute to 1 item
> setattr /A r chain_id EG
Assigning chain_id attribute to 2 items
> save Tubulin_A5_EG.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EC.pdb
Summary of feedback from opening Tubulin_A5_EC.pdb
---
warnings | Ignored bad PDB record found on line 3536
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A5_EC.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id EC
Assigning chain_id attribute to 1 item
> setattr /A r chain_id EC
Assigning chain_id attribute to 2 items
> save Tubulin_A5_EC.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EB.pdb
Summary of feedback from opening Tubulin_A5_EB.pdb
---
warnings | Ignored bad PDB record found on line 3487
END
Start residue of secondary structure not found: HELIX 22 22 GLY A 10 HIS A 28
1 19
Start residue of secondary structure not found: HELIX 23 23 PHE A 49 THR A 51
1 3
Start residue of secondary structure not found: HELIX 24 24 THR A 73 VAL A 78
1 6
Start residue of secondary structure not found: HELIX 25 25 THR A 82 GLN A 85
1 4
Start residue of secondary structure not found: HELIX 26 26 ARG A 105 ALA A
126 1 22
25 messages similar to the above omitted
Chain information for Tubulin_A5_EB.pdb #1
---
Chain | Description
B | No description available
> setattr /B c chain_id EB
Assigning chain_id attribute to 1 item
> setattr /B r chain_id EB
Assigning chain_id attribute to 1 item
> save Tubulin_A5_EB.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
> open Tubulin_A5_EA.pdb
Summary of feedback from opening Tubulin_A5_EA.pdb
---
warnings | Ignored bad PDB record found on line 3536
END
Start residue of secondary structure not found: HELIX 1 1 GLY B 10 GLU B 27 1
18
Start residue of secondary structure not found: HELIX 2 2 ILE B 47 VAL B 49 1
3
Start residue of secondary structure not found: HELIX 3 3 THR B 55 GLY B 57 1
3
Start residue of secondary structure not found: HELIX 4 4 GLY B 71 ALA B 78 1
8
Start residue of secondary structure not found: HELIX 5 5 GLY B 82 LEU B 84 1
3
28 messages similar to the above omitted
Chain information for Tubulin_A5_EA.pdb #1
---
Chain | Description
A | No description available
> setattr /A c chain_id EA
Assigning chain_id attribute to 1 item
> setattr /A r chain_id EA
Assigning chain_id attribute to 2 items
> save Tubulin_A5_EA.cif format mmcif models #1
Not saving entity_poly_seq for non-authoritative sequences
> close #1
executed chimeraX_convert2cif.cxc
OpenGL version: 4.1 INTEL-14.6.18
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 1037.120.87.0.0 (iBridge: 17.16.15300.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.5 (19F101)
Kernel Version: Darwin 19.5.0
Time since boot: 3 days 3:26
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash setting StructureSeq chain_id |
comment:2 by , 4 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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