Opened 4 years ago

Closed 4 years ago

Last modified 4 years ago

#5544 closed enhancement (fixed)

Allow EMDB fetch command to choose europe/japan/china/us and ftp/https

Reported by: philip.macmenamin@… Owned by: Tom Goddard
Priority: moderate Milestone:
Component: Volume Data Version:
Keywords: Cc: phil.cruz@…, pett, Elaine Meng
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The NIH 3D pipeline would like to fetch EMDB maps from the US mirror using https (not insecure ftp). Add options to the open command to allow this, for example,

open 1832 from emdb_us transferMethod https

The default transfer method is ftp for the US, Europe and China, and https for Japan. Make database names emdb_japan, emdb_europe, emdb_china, emdb_us and allow methods https and ftp.

Change History (3)

comment:1 by Tom Goddard, 4 years ago

Resolution: → fixed
Status: assigned → closed

Added the extra EMDB fetch options in ChimeraX 1.3 and 1.4.

in reply to:  2 ; comment:2 by goddard@…, 4 years ago 

Eric, could you update the NIH 3D ChimeraX script to fetch EMDB maps from emdb_us with https?  "open 1832 from emdb_us transferMethod https".

comment:3 by pett, 4 years ago

Have made the changes to the script and submitted a pull request.

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