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Opened 4 years ago
Closed 4 years ago
#5495 closed defect (fixed)
Model tiling: 'NoneType' object is not iterable
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Structure Comparison | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.19042
ChimeraX Version: 1.3rc202110261847 (2021-10-26 18:47:13 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010e"C
Windows fatal exception: :\Windows fatal exception: code 0xWindows fatal exception: code 0x8001010eProcode 0x8001010e
8001010e
Windows fatal exception: code 0xWindows fatal exception: code 0xWindows fatal exception: code 0x8001010e
gWindows fatal exception: code 0xra8001010e
8001010e
8001010eWindows fatal exception:
Windows fatal exception: Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
mWindows fatal exception: code 0xF8001010ei
les\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\licode 0xb8001010e\
site-pacWindows fatal exception: kcode 0xa8001010eg
es\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
_main.py", line 1018code 0x in 8001010ecode 0x
8001010e File
"C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeWindows fatal exception: rcode 0xa8001010eX
1.3rWindows fatal exception: ccode 0x28001010e0
2110Windows fatal exception: 2code 0x68001010e1
847Windows fatal exception: \code 0xb8001010ei
n\lWindows fatal exception: icode 0xb8001010e\
sitWindows fatal exception: ecode 0x-8001010ep
ackWindows fatal exception: acode 0xg8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
eraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_cWindows fatal exception: ocode 0xd8001010ee
File "CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0xr8001010ec
20Windows fatal exception: 2code 0x18001010e1
0261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847Windows fatal exception: \code 0xb8001010ei
n\libWindows fatal exception: \code 0xs8001010ei
te-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0xs8001010e\
chiWindows fatal exception: mcode 0xe8001010er
ax\Windows fatal exception: ocode 0xp8001010ee
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
n_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.Windows fatal exception: 3code 0x8001010er
c20211Windows fatal exception: 0code 0x28001010e6
184Windows fatal exception: 7code 0x\8001010eb
in\Windows fatal exception: lcode 0xi8001010eb
\sitWindows fatal exception: ecode 0x-8001010ep
ackWindows fatal exception: acode 0xg8001010ee
s\cWindows fatal exception: hcode 0xi8001010em
eraWindows fatal exception: xcode 0x\8001010eo
pen_command\dialog.py", line 107 in
File "C:\Program Files\ChimeWindows fatal exception: rcode 0xa8001010eX
1.3Windows fatal exception: rcode 0xc8001010e2
021Windows fatal exception: 1code 0x08001010e2
6184Windows fatal exception: 7code 0x\8001010eb
in\Windows fatal exception: lcode 0xi8001010eb
\siWindows fatal exception: tcode 0xe8001010e-
pacWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xc8001010eh
imerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChWindows fatal exception: icode 0xm8001010ee
raX_Windows fatal exception: mcode 0xa8001010ei
n.pWindows fatal exception: ycode 0x"8001010e, line
867 in iWindows fatal exception: ncode 0xi8001010et
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.Windows fatal exception: 3code 0xr8001010ec
2021Windows fatal exception: 1code 0x08001010e2
618Windows fatal exception: 4code 0x78001010e\
binWindows fatal exception: \code 0xl8001010ei
b\rWindows fatal exception: ucode 0xn8001010ep
y.pWindows fatal exception: ycode 0x"8001010e, line
87 in Windows fatal exception: _code 0xr8001010eu
n_Windows fatal exception: ccode 0xo8001010ed
e
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in eveWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
nt_loop
File "C:\Program Files\ChimeraX 1.3rc202110Windows fatal exception: 2code 0x68001010e1
847\Windows fatal exception: bcode 0xi8001010en
\liWindows fatal exception: bcode 0x\8001010es
iteWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\liWindows fatal exception: bcode 0x\8001010es
ite-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raXWindows fatal exception: _code 0xm8001010ea
iWindows fatal exception: ncode 0x.8001010ep
y"Windows fatal exception: , line code 0x8001010e
Windows fatal exception: code 0x8001010e
1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_asWindows fatal exception: code 0x_8001010em
ain
Windows fatal exception: code 0x8001010eWindows fatal exception:
code 0xThread 0x8001010e00003de0
(most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChWindows fatal exception: icode 0xm8001010ee
raX_mWindows fatal exception: acode 0xi8001010en
.pyWindows fatal exception: "code 0x, line 8001010e867
in inWindows fatal exception: icode 0xt8001010e
File "CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
FiWindows fatal exception: lcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
raX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\binWindows fatal exception: \code 0xl8001010ei
b\runWindows fatal exception: pcode 0xy8001010e.
py"Windows fatal exception: , line code 0x1978001010e in
_ruWindows fatal exception: ncode 0x_8001010em
oduWindows fatal exception: lcode 0xe8001010e_
asWindows fatal exception: _code 0xm8001010ea
inWindows fatal exception:
code 0x8001010e
Thread 0xWindows fatal exception: 00003de0code 0x8001010e (most recent call first):
File "C:Windows fatal exception: code 0x8001010e\
ProWindows fatal exception: gcode 0xr8001010ea
m FiWindows fatal exception: lcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.pWindows fatal exception: ycode 0x"8001010e, line
197 in _rWindows fatal exception: ucode 0xn8001010e_
modWindows fatal exception: ucode 0xl8001010ee
_asWindows fatal exception: _code 0xm8001010ea
inWindows fatal exception:
code 0x8001010e
Thread 0x00003de0Windows fatal exception: (most recent call first):
code 0x File 8001010e"
C:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0xr8001010ec
202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lWindows fatal exception: icode 0xb8001010e\
runpyWindows fatal exception: .code 0xp8001010ey
", line 87 in Windows fatal exception: _code 0xr8001010eu
n_coWindows fatal exception: dcode 0xe8001010e
File "C:Windows fatal exception: \code 0xP8001010er
ograWindows fatal exception: mcode 0x 8001010eF
ilesWindows fatal exception: \code 0xC8001010eh
imerWindows fatal exception: acode 0xX8001010e
1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chWindows fatal exception: icode 0xm8001010ee
rax\uWindows fatal exception: icode 0x\8001010eg
ui.Windows fatal exception: pcode 0xy8001010e"
, line 301 in eWindows fatal exception: vcode 0xe8001010en
t_Windows fatal exception: lcode 0xo8001010eo
p
File "Windows fatal exception: Ccode 0x:8001010e\
ProWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
es\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1Windows fatal exception: .code 0x38001010er
c2021Windows fatal exception: 1code 0x08001010e2
61847Windows fatal exception: \code 0xb8001010ei
n\lWindows fatal exception: icode 0xb8001010e\
ruWindows fatal exception: npycode 0x.8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Windows fatal exception: Pcode 0xr8001010eo
gram Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
rcWindows fatal exception: 2code 0x08001010e2
110Windows fatal exception: 2code 0x618001010e8
47\Windows fatal exception: bcode 0xi8001010en
\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0Windows fatal exception: (most recent call first):
code 0x File 8001010e"
C:\Windows fatal exception: Pcode 0xr8001010e
ogrWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0xr8001010ec
20Windows fatal exception: 2code 0x18001010e1
0261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\sitWindows fatal exception: ecode 0x-8001010ep
ackWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010ex
\oWindows fatal exception: pcode 0xe8001010en
_cWindows fatal exception: ocode 0xm8001010emand\dialog.py", line 107 in
Windows fatal exception: File code 0x"8001010eC
:\PWindows fatal exception: rcode 0xo8001010eg
ram Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_commaWindows fatal exception: ncode 0xd8001010e\
[had to delete hundreds of Ines because the ticket was too big]
02618Windows fatal exception: 4code 0x78001010e\
binWindows fatal exception: \code 0xl8001010ei
b\ruWindows fatal exception: ncode 0xp8001010ey
.pyWindows fatal exception: "code 0x, line 8001010e87
in _rWindows fatal exception: ucode 0xn8001010e_
codWindows fatal exception: ecode 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
rogram Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc20211026Windows fatal exception: 1code 0x88001010e4
7\bWindows fatal exception: icode 0xn8001010e\
libWindows fatal exception: \code 0xs8001010ei
te-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0xs8001010e\
chWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: xcode 0x\8001010eo
peWindows fatal exception: ncode 0x_8001010ec
ommand\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in 8001010e
File "C:Windows fatal exception: \code 0xP8001010er
ogrWindows fatal exception: acode 0xm8001010e
FilWindows fatal exception: ecode 0xs8001010e\
ChiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3rWindows fatal exception: ccode 0x28001010e02
110Windows fatal exception: 2code 0x68001010e1
847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_Windows fatal exception: mcode 0xa8001010ei
n.pyWindows fatal exception: "code 0x, line 8001010e867
in iWindows fatal exception: ncode 0xi8001010et
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
raWindows fatal exception: mcode 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\libWindows fatal exception: code 0x\8001010er
unpyWindows fatal exception: .code 0xpy8001010e"
, line 87 in Windows fatal exception: _code 0xr8001010eu
n_cWindows fatal exception: ocode 0xd8001010ee
File Windows fatal exception: "code 0xC8001010e:
\PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
himeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-Windows fatal exception: pcode 0xa8001010ec
kageWindows fatal exception: scode 0x\8001010ec
hiWindows fatal exception: mcode 0xe8001010er
ax\Windows fatal exception: ocode 0xp8001010ee
n_cWindows fatal exception: ocode 0xm8001010em
andWindows fatal exception: \code 0xd8001010ei
aloWindows fatal exception: gcode 0x.8001010ep
y"Windows fatal exception: , line code 0x1358001010e in
show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimeraxWindows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
\Windows fatal exception: ocode 0xp8001010ee
n_Windows fatal exception: ccode 0xo8001010em
maWindows fatal exception: ncode 0xd8001010e\
dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program FilesWindows fatal exception: \code 0xCh8001010ei
meraWindows fatal exception: Xcode 0x 8001010e1
.3rWindows fatal exception: ccode 0x28001010e0
21Windows fatal exception: 1code 0x08001010e2
61Windows fatal exception: 8code 0x48001010e7
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
ackages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\libWindows fatal exception: \code 0xr8001010eu
npy.Windows fatal exception: pcode 0xy8001010e"
, line 87 in _Windows fatal exception: rcode 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
uWindows fatal exception: ncode 0x_8001010ec
ode
Windows fatal exception: File code 0x"8001010eC:
\Program Files\ChimeraX 1.3Windows fatal exception: code 0x8001010e
rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\libWindows fatal exception: \code 0xs8001010ei
te-pWindows fatal exception: acode 0xc8001010ek
ageWindows fatal exception: scode 0x\8001010ec
hiWindows fatal exception: mcode 0xe8001010er
axWindows fatal exception: \code 0xo8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
pen_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packWindows fatal exception: agcode 0xe8001010es
\chimWindows fatal exception: ecode 0xr8001010ea
x\uWindows fatal exception: icode 0x\8001010eg
ui.Windows fatal exception: pcode 0xy8001010e"
, line 301 in Windows fatal exception: ecode 0xv8001010ee
nt_Windows fatal exception: lcode 0xo8001010eo
p
Windows fatal exception: File code 0x"8001010eC
:\PWindows fatal exception: code 0xr8001010eo
gram Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rcWindows fatal exception: 2code 0x08001010e2
1102Windows fatal exception: 6code 0x18001010e8
47Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\rWindows fatal exception: ucode 0xn8001010ep
y.pWindows fatal exception: ycode 0x"8001010e, line
87 in Windows fatal exception: _code 0xr8001010eu
n_Windows fatal exception: ccode 0xo8001010ed
e
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "CWindows fatal exception: :code 0x\8001010eP
rogrWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010eer
aX Windows fatal exception: 1code 0x.8001010e3
rcWindows fatal exception: 2code 0x08001010e2
110Windows fatal exception: 2code 0x68001010e1
84Windows fatal exception: 7code 0x\8001010eb
in\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc20Windows fatal exception: 2code 0x18001010e1
026Windows fatal exception: 1code 0x88001010e4
7\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
sWindows fatal exception: icode 0xt8001010ee
-pWindows fatal exception: acode 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
ckages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\Windows fatal exception: bcode 0xi8001010en
\liWindows fatal exception: bcode 0x\8001010es
iWindows fatal exception: tcode 0xe8001010e-
pWindows fatal exception: acode 0xc8001010ek
aWindows fatal exception: gcode 0xe8001010es
\Windows fatal exception: ccode 0xh8001010ei
mWindows fatal exception: ecode 0xr8001010ea
xWindows fatal exception: \code 0xo8001010ep
en_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1Windows fatal exception: .code 0x38001010er
c2021Windows fatal exception: 1code 0x08001010e2
618Windows fatal exception: 4code 0x78001010e\
biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xs8001010ei
teWindows fatal exception: -code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc2Windows fatal exception: 0code 0x28001010e1
102Windows fatal exception: 6code 0x18001010e8
47\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
ruWindows fatal exception: ncode 0xp8001010ey
.pyWindows fatal exception: "code 0x, line 8001010e87
in _Windows fatal exception: rcode 0xu8001010en
_coWindows fatal exception: dcode 0xe8001010e
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\CWindows fatal exception: hcode 0xi8001010em
eraWindows fatal exception: X code 0x18001010e.
3rWindows fatal exception: ccode 0x28001010e0
2110Windows fatal exception: 2code 0x68001010e1
847Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\sWindows fatal exception: icode 0xt8001010e
Windows fatal exception: code 0x8001010e
e-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc2Windows fatal exception: 0code 0x28001010e1
1026Windows fatal exception: 1code 0x88001010e4
7\bWindows fatal exception: icode 0xn8001010e\
libWindows fatal exception: \code 0xs8001010ei
teWindows fatal exception: -code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc20Windows fatal exception: 2code 0x18001010e1
0261Windows fatal exception: 8code 0x48001010e7
\biWindows fatal exception: ncode 0x\8001010el
ib\Windows fatal exception: rcode 0xu8001010en
pyWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 87code 0x in 8001010e_
ruWindows fatal exception: ncode 0x_8001010ec
odWindows fatal exception: ecode 0x
8001010e File
"C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc20211Windows fatal exception: 0code 0x28001010e6
184Windows fatal exception: 7code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\sWindows fatal exception: icode 0xt8001010ee
-pWindows fatal exception: acode 0xc8001010ek
agWindows fatal exception: ecode 0xs8001010e\
chWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: code 0x8001010e
x\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\siteWindows fatal exception: -code 0xp8001010ea
ckagWindows fatal exception: ecode 0xs8001010e\
chiWindows fatal exception: mcode 0xe8001010er
axWindows fatal exception: \code 0xo8001010ep
enWindows fatal exception: _code 0xc8001010eo
mmWindows fatal exception: acode 0xn8001010ed
\dWindows fatal exception: icode 0xa8001010el
ogWindows fatal exception: .code 0xp8001010ey
", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
Windows fatal exception: File code 0x"8001010eC
:\PrWindows fatal exception: ocode 0xg8001010er
am Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
rcWindows fatal exception: 2code 0x08001010e2
11Windows fatal exception: 0code 0x28001010e6
1847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003de0 (most recent call first):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-packages\numpy\core\_methods.py", line 57 in _any
Windows fatal exception: access violation
===== Log before crash start =====
UCSF ChimeraX version: 1.3rc202110261847 (2021-10-26)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:/Users/Jitske/Documents/phd/pdb files/Vash_SVBP_peptide.pdb"
Summary of feedback from opening C:/Users/Jitske/Documents/phd/pdb
files/Vash_SVBP_peptide.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK FILENAME="complex_112w.pdb0"
Ignored bad PDB record found on line 2
REMARK ===============================================================
Ignored bad PDB record found on line 3
REMARK HADDOCK run for complex
Ignored bad PDB record found on line 4
REMARK initial structure: complex_112.pdb
Ignored bad PDB record found on line 5
REMARK final NOE weights: unambig 50 amb: 50
30 messages similar to the above omitted
Chain information for Vash_SVBP_peptide.pdb #1
---
Chain | Description
A | No description available
B | No description available
> set bgColor white
> open "C:/Users/Jitske/Documents/phd/HADDOCK/HD010 - MC147-471 EY and ALL
> active and MORE LOOSE restraints - second round of modelling THE PUBLISHED
> MODELS/cluster1_1.pdb"
Summary of feedback from opening C:/Users/Jitske/Documents/phd/HADDOCK/HD010 -
MC147-471 EY and ALL active and MORE LOOSE restraints - second round of
modelling THE PUBLISHED MODELS/cluster1_1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK FILENAME="complex_108w.pdb0"
Ignored bad PDB record found on line 2
REMARK ===============================================================
Ignored bad PDB record found on line 3
REMARK HADDOCK run for complex
Ignored bad PDB record found on line 4
REMARK initial structure: complex_108.pdb
Ignored bad PDB record found on line 5
REMARK ===============================================================
29 messages similar to the above omitted
Chain information for cluster1_1.pdb #2
---
Chain | Description
D | No description available
T | No description available
> tile
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 297, in execute
cmd.run(cmd_text)
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2856, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\std_commands\tile.py", line 8, in tile
models = [m for m in models if m.bounds() is not None]
TypeError: 'NoneType' object is not iterable
TypeError: 'NoneType' object is not iterable
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\std_commands\tile.py", line 8, in tile
models = [m for m in models if m.bounds() is not None]
See log for complete Python traceback.
> tile
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 297, in execute
cmd.run(cmd_text)
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2856, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\std_commands\tile.py", line 8, in tile
models = [m for m in models if m.bounds() is not None]
TypeError: 'NoneType' object is not iterable
TypeError: 'NoneType' object is not iterable
File "C:\Program Files\ChimeraX 1.3rc202110261847\bin\lib\site-
packages\chimerax\std_commands\tile.py", line 8, in tile
models = [m for m in models if m.bounds() is not None]
See log for complete Python traceback.
> tile #1,2
2 models tiled
> graphics silhouettes true
> show surfaces
> tile #1,2
2 models tiled
> tile #1,2
2 models tiled
> transparency 50
> transparency 30
> transparency 70
> color #2 #0063afff
> select #1
2836 atoms, 2889 bonds, 1 pseudobond, 281 residues, 2 models selected
> ui tool show "Color Actions"
> color sel coral
> color sel orange
> color sel goldenrod
> color sel khaki
> color sel sandy brown
> select #1/B
75 atoms, 75 bonds, 8 residues, 1 model selected
> ui tool show "Color Actions"
> color sel spring green
> select #2/T
75 atoms, 75 bonds, 8 residues, 1 model selected
> color sel spring green
> select #1
2836 atoms, 2889 bonds, 1 pseudobond, 281 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99995,-0.0097696,-0.0031278,0.0083882,0.0094693,0.76185,0.64769,0.74198,-0.0039447,-0.64768,0.7619,0.20504
> view matrix models
> #1,0.99874,-0.039133,-0.031324,0.0081633,0.032687,0.0347,0.99886,1.456,-0.038002,-0.99863,0.035936,-0.18629
> tile #1,2
2 models tiled
> select #2
3364 atoms, 3427 bonds, 334 residues, 1 model selected
> view matrix models
> #2,0.98712,0.029251,-0.15729,6.3456,-0.06117,0.97745,-0.20212,-34.999,0.14783,0.20914,0.96665,-53.225
> ui mousemode right select
> select #1/A:79@CA
1 atom, 1 residue, 1 model selected
> select #1/A:61@CE1
1 atom, 1 residue, 1 model selected
> select #1/B:27@CB
1 atom, 1 residue, 1 model selected
> select #1/A:194@CD
1 atom, 1 residue, 1 model selected
> select up
13 atoms, 12 bonds, 1 residue, 2 models selected
> select up
123 atoms, 127 bonds, 11 residues, 2 models selected
> select up
2761 atoms, 2814 bonds, 273 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99745,-0.057351,-0.042509,0.016707,0.030614,-0.19429,0.98047,1.5738,-0.064489,-0.97927,-0.19204,-0.50464
> view matrix models
> #1,0.99732,-0.054563,-0.04874,0.010424,0.039929,-0.1523,0.98753,1.5675,-0.061306,-0.98683,-0.14971,-0.46534
> view matrix models
> #1,0.99761,-0.056321,-0.039907,0.018196,0.026607,-0.2197,0.9752,1.5793,-0.063692,-0.97394,-0.21768,-0.52493
> select clear
> transparency 80
> transparency 60
> select #1/A:28@N
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 11 bonds, 1 residue, 2 models selected
> select up
257 atoms, 257 bonds, 24 residues, 2 models selected
> ui tool show "Color Actions"
> color sel medium spring green
> select #1/B:24@CB
1 atom, 1 residue, 1 model selected
> select up
10 atoms, 9 bonds, 1 residue, 2 models selected
> select up
75 atoms, 75 bonds, 8 residues, 2 models selected
> select add #2/T:24@CB
76 atoms, 75 bonds, 9 residues, 3 models selected
> select up
85 atoms, 84 bonds, 9 residues, 4 models selected
> select up
150 atoms, 150 bonds, 16 residues, 4 models selected
> color (#!1-2 & sel) cornflower blue
> color (#!1-2 & sel) red
> transparency (#!1-2 & sel) 100
> transparency (#!1-2 & sel) 80
> select clear
> select #1/B:24@CB
1 atom, 1 residue, 1 model selected
> select up
10 atoms, 9 bonds, 1 residue, 2 models selected
> select up
75 atoms, 75 bonds, 8 residues, 2 models selected
> select #2/T:24@CB
1 atom, 1 residue, 1 model selected
> select up
10 atoms, 9 bonds, 1 residue, 2 models selected
> select up
75 atoms, 75 bonds, 8 residues, 2 models selected
> select add #1/B:24@CB
76 atoms, 75 bonds, 9 residues, 3 models selected
> select up
85 atoms, 84 bonds, 9 residues, 4 models selected
> select up
150 atoms, 150 bonds, 16 residues, 4 models selected
> delete sel
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting soft
> lighting simple
> transparency 30
> tile #1,2
2 models tiled
> select add #1/A:28@N
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 11 bonds, 1 residue, 2 models selected
> select up
257 atoms, 257 bonds, 24 residues, 2 models selected
> ui tool show "Color Actions"
> color sel medium spring green target acpf
> select #1/A:201@CG
1 atom, 1 residue, 1 model selected
> select up
14 atoms, 14 bonds, 1 residue, 2 models selected
> select up
128 atoms, 131 bonds, 12 residues, 2 models selected
> select up
2761 atoms, 2814 bonds, 273 residues, 2 models selected
> select down
128 atoms, 131 bonds, 12 residues, 2 models selected
> color sel coral target acpf
> color sel coral
> select #1/A
2761 atoms, 2814 bonds, 1 pseudobond, 273 residues, 2 models selected
> select #1/A
2761 atoms, 2814 bonds, 1 pseudobond, 273 residues, 2 models selected
> color sel orange
> color sel gold
> color sel coral
> hide sel surfaces
> select #1/A:26
8 atoms, 7 bonds, 1 residue, 1 model selected
> select add #1/A:50
18 atoms, 16 bonds, 2 residues, 2 models selected
> select add #1/A:49
27 atoms, 24 bonds, 3 residues, 2 models selected
> select add #1/A:48
37 atoms, 33 bonds, 4 residues, 2 models selected
> select add #1/A:46
46 atoms, 41 bonds, 5 residues, 2 models selected
> select add #1/A:47
55 atoms, 49 bonds, 6 residues, 2 models selected
> select add #1/A:45
63 atoms, 56 bonds, 7 residues, 2 models selected
> select add #1/A:44
80 atoms, 72 bonds, 8 residues, 2 models selected
> select add #1/A:43
91 atoms, 82 bonds, 9 residues, 2 models selected
> select add #1/A:42
100 atoms, 90 bonds, 10 residues, 2 models selected
> select add #1/A:41
106 atoms, 95 bonds, 11 residues, 2 models selected
> select add #1/A:39
115 atoms, 103 bonds, 12 residues, 2 models selected
> select add #1/A:40
129 atoms, 117 bonds, 13 residues, 2 models selected
> select add #1/A:72
135 atoms, 122 bonds, 14 residues, 2 models selected
Drag select of 6 residues
> select add #1/A:75
189 atoms, 131 bonds, 17 residues, 2 models selected
> select subtract #1/A:78
173 atoms, 131 bonds, 16 residues, 2 models selected
> select subtract #1/A:74
157 atoms, 131 bonds, 15 residues, 2 models selected
> select subtract #1/A:75
147 atoms, 122 bonds, 14 residues, 2 models selected
> select add #1/A:77
156 atoms, 130 bonds, 15 residues, 2 models selected
> select subtract #1/A:76
139 atoms, 130 bonds, 14 residues, 2 models selected
> select add #1/A:75
149 atoms, 139 bonds, 15 residues, 2 models selected
> select subtract #1/A:75
139 atoms, 130 bonds, 14 residues, 2 models selected
> select subtract #1/A:77
130 atoms, 122 bonds, 13 residues, 2 models selected
> select add #1/A:37
136 atoms, 127 bonds, 14 residues, 2 models selected
> select add #1/A:34
153 atoms, 143 bonds, 15 residues, 2 models selected
> select add #1/A:36
170 atoms, 159 bonds, 16 residues, 2 models selected
> select add #1/A:31
179 atoms, 167 bonds, 17 residues, 2 models selected
> select add #1/A:30
189 atoms, 176 bonds, 18 residues, 2 models selected
> select add #1/A:129
198 atoms, 184 bonds, 19 residues, 2 models selected
> select add #1/A:29
210 atoms, 195 bonds, 20 residues, 2 models selected
> select subtract #1/A:129
201 atoms, 187 bonds, 19 residues, 2 models selected
> select add #1/A:27
207 atoms, 192 bonds, 20 residues, 2 models selected
> select add #1/A:39
216 atoms, 192 bonds, 21 residues, 2 models selected
> select add #1/A:28
228 atoms, 203 bonds, 22 residues, 2 models selected
> select add #1/A:32
241 atoms, 215 bonds, 23 residues, 2 models selected
> select add #1/A:35
253 atoms, 226 bonds, 24 residues, 2 models selected
> select add #1/A:33
265 atoms, 237 bonds, 25 residues, 2 models selected
> ui tool show "Color Actions"
> color sel medium sea green
> select clear
> select #1/A:72
6 atoms, 5 bonds, 1 residue, 1 model selected
> color sel coral
> select clear
> show surfaces
> transparency 70
> transparency 30
> save C:\Users\Jitske\Desktop\image25.png supersample 3
> save C:/Users/Jitske/Documents/phd/Figures/MC_paper/cryo-
> EMsubfigures/vashMC_comparison.cxs
> open 6wsl
6wsl title:
Cryo-EM structure of VASH1-SVBP bound to microtubules [more info...]
Chain information for 6wsl #3
---
Chain | Description | UniProt
A E | Tubulin alpha-1A chain | TBA1A_HUMAN
B F | Tubulin beta-3 chain | TBB3_HUMAN
C G | Tubulinyl-Tyr carboxypeptidase 1 | VASH1_HUMAN
D H | Small vasohibin-binding protein | SVBP_HUMAN
Non-standard residues in 6wsl #3
---
G2P — phosphomethylphosphonic acid guanylate ester
GTP — guanosine-5'-triphosphate
> open C:/Users/Jitske/Documents/phd/Figures/MC_paper/cryo-EMsubfigures/tubab-
> all-merge-fit.pdb
Chain information for tubab-all-merge-fit.pdb #4
---
Chain | Description
A | No description available
B | No description available
D | No description available
> tile #1-4
4 models tiled
> select #4/B
3441 atoms, 3524 bonds, 428 residues, 1 model selected
> select #3/B#3/F
6804 atoms, 6958 bonds, 860 residues, 1 model selected
> select add #4/B:420
6813 atoms, 6966 bonds, 861 residues, 2 models selected
> select up
6990 atoms, 7146 bonds, 882 residues, 2 models selected
> select up
10245 atoms, 10482 bonds, 1288 residues, 2 models selected
> color sel dark gray
> select #3/A#3/E
6820 atoms, 6978 bonds, 2 pseudobonds, 864 residues, 2 models selected
> select add #4/A:329
6828 atoms, 6985 bonds, 2 pseudobonds, 865 residues, 3 models selected
> select up
6913 atoms, 7071 bonds, 2 pseudobonds, 877 residues, 3 models selected
> select up
10183 atoms, 10408 bonds, 2 pseudobonds, 1291 residues, 3 models selected
> color (#!3-4 & sel) gray
> select #3/D#3/H
528 atoms, 530 bonds, 62 residues, 1 model selected
> ui tool show "Color Actions"
> color sel medium spring green
> select #3/C#3/G
4052 atoms, 4160 bonds, 496 residues, 1 model selected
> color sel coral
> select clear
> select #4/D:199
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
138 atoms, 139 bonds, 15 residues, 1 model selected
> select up
3289 atoms, 3352 bonds, 326 residues, 1 model selected
> color sel #0063afff
> select clear
> show surfaces
> hide surfaces
> style ball
Changed 34349 atom styles
> style ball
Changed 34349 atom styles
> style sphere
Changed 34349 atom styles
> select clear
> style sphere
Changed 34349 atom styles
> select all
34349 atoms, 35098 bonds, 5 pseudobonds, 4064 residues, 8 models selected
> style sel sphere
Changed 34349 atom styles
> style sel stick
Changed 34349 atom styles
> show sel cartoons
> hide sel atoms
> show sel surfaces
> hide sel surfaces
> style sel sphere
Changed 34349 atom styles
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> show sel atoms
> select #3
18204 atoms, 18626 bonds, 2 pseudobonds, 2282 residues, 2 models selected
> view matrix models
> #3,0.54905,0.72376,-0.41799,-141.73,-0.6351,0.036185,-0.77158,157.55,-0.54331,0.68911,0.47952,-227.68
> view matrix models
> #3,-0.33745,0.32234,-0.88444,101.12,-0.57358,-0.8154,-0.078328,216.16,-0.74641,0.48086,0.46004,-162.07
> view matrix models
> #3,0.44837,-0.28237,-0.84808,83.109,-0.82479,-0.49638,-0.27079,220.16,-0.3445,0.8209,-0.45546,-180.37
> view matrix models
> #3,0.46712,-0.27059,-0.84177,77.804,-0.80299,-0.52837,-0.27575,222.78,-0.37015,0.80474,-0.46409,-173.11
> select #4
10095 atoms, 10306 bonds, 2 pseudobonds, 1183 residues, 3 models selected
> view matrix models
> #4,0.97017,0.084216,-0.22733,34.537,-0.23875,0.16929,-0.95621,200.36,-0.042043,0.98196,0.18435,-344.59
> view matrix models
> #4,-0.79726,-0.40367,-0.4488,455.31,0.23443,0.47807,-0.84646,43.516,0.55625,-0.78006,-0.28651,-8.9787
> view matrix models
> #4,0.91854,0.38276,0.098915,-84.667,0.11308,-0.014631,-0.99348,186.7,-0.37882,0.92373,-0.056723,-226.95
> view matrix models
> #4,0.053556,0.99806,-0.031646,-32.293,-0.038253,-0.029618,-0.99883,214.75,-0.99783,0.054704,0.036593,12.204
> select #3
18204 atoms, 18626 bonds, 2 pseudobonds, 2282 residues, 2 models selected
> view matrix models
> #3,0.96233,0.26963,-0.034895,-166.88,0.096577,-0.45898,-0.88318,144.82,-0.25415,0.84654,-0.46774,-196.37
> view matrix models
> #3,0.93467,0.29814,0.19369,-191.45,0.21238,-0.031288,-0.97669,67.566,-0.28512,0.95401,-0.092561,-248.76
> view matrix models
> #3,0.93697,0.29864,0.18138,-190.58,0.19359,-0.011564,-0.98102,67.493,-0.29087,0.9543,-0.068647,-250.47
> select clear
> select #3/G:297@CB
1 atom, 1 residue, 1 model selected
> select up
10 atoms, 10 bonds, 1 residue, 2 models selected
> select up
177 atoms, 178 bonds, 20 residues, 2 models selected
> select #3/H:53@OE1
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> select up
46 atoms, 46 bonds, 5 residues, 2 models selected
> select up
264 atoms, 265 bonds, 31 residues, 2 models selected
> select up
18204 atoms, 18626 bonds, 2282 residues, 2 models selected
> select #3/G
2026 atoms, 2080 bonds, 248 residues, 1 model selected
> delete sle
Missing or invalid "atoms" argument: invalid atoms specifier
> delete sel
> select #3H
Expected an objects specifier or a keyword
> select #3/H
264 atoms, 265 bonds, 31 residues, 1 model selected
> delete sel
> tile #1-4
4 models tiled
> ui tool show "Color Actions"
> show surfaces
> ui tool show "Color Actions"
> select #3/C:281@CG
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> select up
29 atoms, 28 bonds, 4 residues, 2 models selected
> select up
2026 atoms, 2080 bonds, 248 residues, 2 models selected
> color sel coral
> select #3/D:53@CG
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> select up
46 atoms, 46 bonds, 5 residues, 2 models selected
> select up
264 atoms, 265 bonds, 31 residues, 2 models selected
> color sel medium spring green
> select #3/A:359@CD
1 atom, 1 residue, 1 model selected
> select up
7 atoms, 7 bonds, 1 residue, 2 models selected
> select up
137 atoms, 140 bonds, 19 residues, 2 models selected
> select up
3410 atoms, 3489 bonds, 432 residues, 2 models selected
> select #3/E:359@CG
1 atom, 1 residue, 1 model selected
> select up
7 atoms, 7 bonds, 1 residue, 2 models selected
> select up
137 atoms, 140 bonds, 19 residues, 2 models selected
> select up
3410 atoms, 3489 bonds, 432 residues, 2 models selected
> color sel gray
> select #3/A:36@CE
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> select up
125 atoms, 128 bonds, 16 residues, 2 models selected
> select up
3410 atoms, 3489 bonds, 432 residues, 2 models selected
> color sel gray
> select #3/B#3/F
6804 atoms, 6958 bonds, 860 residues, 1 model selected
> color (#!3 & sel) dark gray
> select #4/B:54@CA
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 2 models selected
> select up
97 atoms, 99 bonds, 12 residues, 2 models selected
> select up
3441 atoms, 3524 bonds, 428 residues, 2 models selected
> color (#!4 & sel) dark gray
> select #4/A:24@CE2
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 2 models selected
> select up
135 atoms, 137 bonds, 18 residues, 2 models selected
> select up
3363 atoms, 3430 bonds, 427 residues, 2 models selected
> color (#!4 & sel) gray
> select #4/D:380@N
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 2 models selected
> select up
123 atoms, 124 bonds, 13 residues, 2 models selected
> select up
3289 atoms, 3352 bonds, 326 residues, 2 models selected
> color sel #0063afff
> select up
10095 atoms, 10306 bonds, 1183 residues, 2 models selected
> select up
10095 atoms, 10306 bonds, 2 pseudobonds, 1183 residues, 6 models selected
> select up
10095 atoms, 10306 bonds, 2 pseudobonds, 1183 residues, 6 models selected
> select down
2 pseudobonds, 5 models selected
> select down
Nothing selected
> tile #1-4
4 models tiled
> ui mousemode right select
> select #2/D:147@CA
1 atom, 1 residue, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.98916,-0.022127,-0.14514,165.56,-0.010089,0.976,-0.21755,17.637,0.14647,0.21666,0.9652,5.4676
> view matrix models
> #2,0.7947,-0.52416,0.30612,166.36,0.5922,0.5588,-0.58055,17.317,0.13324,0.64265,0.75449,5.0216
> view matrix models
> #2,0.48415,-0.80658,-0.33917,164.4,0.50671,0.57447,-0.64283,17.077,0.71333,0.13936,0.68683,5.38
> view matrix models
> #2,0.73683,-0.33144,-0.58926,164.15,0.15579,0.93137,-0.32906,17.54,0.65788,0.15066,0.7379,5.4481
> view matrix models
> #2,0.76333,-0.17193,-0.62271,164.12,0.0027552,0.96479,-0.263,17.546,0.646,0.19904,0.73693,5.4423
> view matrix models
> #2,0.76579,-0.034206,-0.64218,164.1,-0.12636,0.97112,-0.20241,17.558,0.63055,0.23615,0.73935,5.4388
> view matrix models
> #2,0.7691,-0.0083454,-0.63908,164.12,-0.23005,0.92928,-0.28899,17.228,0.59629,0.36928,0.71279,5.3624
> view matrix models
> #2,0.7981,-0.15367,-0.5826,164.26,-0.17061,0.86972,-0.46312,16.855,0.57787,0.46901,0.6679,5.2519
> view matrix models
> #2,0.77488,-0.16852,-0.60924,164.17,-0.17573,0.86838,-0.46371,16.847,0.6072,0.46638,0.64328,5.2215
> view matrix models
> #2,0.9569,0.23239,-0.17417,165.49,-0.27592,0.91458,-0.29564,17.161,0.090587,0.33096,0.93929,5.3709
> view matrix models
> #2,0.89418,0.31085,0.32221,166.65,-0.24012,0.94039,-0.24087,17.338,-0.37788,0.13801,0.91551,4.7764
> view matrix models
> #2,0.87106,0.36085,0.33323,166.66,-0.1991,0.8796,-0.43205,16.904,-0.44901,0.31,0.83803,4.5433
> view matrix models
> #2,0.81668,-0.067974,-0.57308,164.31,-0.29072,0.80937,-0.5103,16.602,0.49852,0.58336,0.64123,5.1211
> view matrix models
> #2,0.48395,-0.30615,-0.81979,163.31,-0.35336,0.78866,-0.50313,16.549,0.80058,0.53318,0.27349,4.534
> view matrix models
> #2,0.45368,-0.22542,-0.86218,163.19,-0.39253,0.81802,-0.42042,16.715,0.80006,0.52917,0.28264,4.5551
> view matrix models
> #2,0.41393,-0.12677,-0.90144,163.07,-0.4429,0.8371,-0.32109,16.907,0.7953,0.53216,0.29036,4.5694
> view matrix models
> #2,0.71938,0.065523,-0.69152,163.94,-0.39494,0.85754,-0.3296,16.941,0.57141,0.51022,0.64278,5.1874
> view matrix models
> #2,0.80356,0.13099,-0.58063,164.32,-0.37766,0.86618,-0.32726,16.967,0.46006,0.48226,0.7455,5.315
> view matrix models
> #2,0.71668,0.063556,-0.6945,163.93,-0.39545,0.8573,-0.32963,16.941,0.57445,0.51088,0.63954,5.1827
> view matrix models
> #2,0.83143,-0.25455,-0.49389,164.49,-0.19593,0.69746,-0.68932,16.243,0.51993,0.66989,0.53002,4.8869
> view matrix models
> #2,0.82487,-0.2288,-0.51695,164.43,-0.21625,0.71718,-0.66249,16.29,0.52232,0.65826,0.5421,4.9167
> view matrix models
> #2,0.80513,-0.16208,-0.57052,164.29,-0.27029,0.75596,-0.59621,16.403,0.52792,0.63423,0.56484,4.9737
> tile #1-4
4 models tiled
> select clear
> ui mousemode right select
> select #1/A:141@O
1 atom, 1 residue, 1 model selected
Drag select of Vash_SVBP_peptide.pdb_A SES surface, 16035 of 277738 triangles,
121 atoms, 33 residues
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99459,-0.086459,-0.057635,0.01888,0.066016,0.097436,0.99305,1.4608,-0.080242,-0.99148,0.10262,-0.30638
> view matrix models
> #1,0.99092,-0.13431,-0.0055133,0.079829,0.086695,0.6072,0.78981,1.04,-0.10273,-0.78312,0.61333,-0.092953
> view matrix models
> #1,0.97127,-0.22917,-0.064213,0.065129,0.22647,0.80702,0.54538,0.94737,-0.073163,-0.54425,0.83573,-0.030894
> view matrix models
> #1,0.96607,-0.25438,-0.044614,0.08679,0.25659,0.92576,0.27772,0.72648,-0.029345,-0.27974,0.95963,-0.034758
> view matrix models
> #1,0.95967,-0.18783,-0.20917,-0.081468,0.28099,0.61795,0.73429,1.2763,-0.0086667,-0.76345,0.64581,0.055888
> view matrix models
> #1,0.97014,-0.16352,-0.17914,-0.058926,0.2324,0.41531,0.87949,1.4315,-0.069421,-0.89486,0.44091,-0.1029
> view matrix models
> #1,0.9566,-0.20203,-0.21001,-0.078102,0.28998,0.58873,0.75453,1.3215,-0.028794,-0.78268,0.62176,0.020587
> select clear
> save C:\Users\Jitske\Desktop\image26.png supersample 3
> save C:/Users/Jitske/Documents/phd/Figures/MC_paper/cryo-
> EMsubfigures/vashMC_comparison.cxs
> open C:/Users/Jitske/Documents/phd/Figures/MC_paper/cryo-
> EMsubfigures/cryosparc_P101_J88__localfilter.mrc
Opened cryosparc_P101_J88__localfilter.mrc as #5, grid size 416,416,416, pixel
1.3, shown at level 0.00024, step 2, values float32
> close #1
> close #2
> close #3
> close #4
> volume #5 level 0.07567
> volume #5 level 0.03796
> open C:/Users/Jitske/Documents/phd/Figures/MC_paper/cryo-EMsubfigures/tubab-
> all-merge-fit.pdb
Chain information for tubab-all-merge-fit.pdb #1
---
Chain | Description
A | No description available
B | No description available
D | No description available
> fitmap #1 inMap #5
Fit molecule tubab-all-merge-fit.pdb (#1) to map
cryosparc_P101_J88__localfilter.mrc (#5) using 10095 atoms
average map value = 0.376, steps = 64
shifted from previous position = 0.0507
rotated from previous position = 0.0903 degrees
atoms outside contour = 2305, contour level = 0.037957
Position of tubab-all-merge-fit.pdb (#1) relative to
cryosparc_P101_J88__localfilter.mrc (#5) coordinates:
Matrix rotation and translation
0.99999892 0.00050098 -0.00138066 0.23234757
-0.00050177 0.99999971 -0.00057138 0.17146610
0.00138038 0.00057207 0.99999888 -0.36154614
Axis 0.36274677 -0.87591040 -0.31811280
Axis point 250.72738652 0.00000000 155.18917753
Rotation angle (degrees) 0.09030367
Shift along axis 0.04910684
> volume #5 level 0.1964
> volume #5 level 0.4453
> volume #5 step 1
> volume #5 level 0.0861
> fitmap #1 inMap #5
Fit molecule tubab-all-merge-fit.pdb (#1) to map
cryosparc_P101_J88__localfilter.mrc (#5) using 10095 atoms
average map value = 0.3759, steps = 368
shifted from previous position = 0.0074
rotated from previous position = 0.0207 degrees
atoms outside contour = 4131, contour level = 0.086099
Position of tubab-all-merge-fit.pdb (#1) relative to
cryosparc_P101_J88__localfilter.mrc (#5) coordinates:
Matrix rotation and translation
0.99999937 0.00041614 -0.00104077 0.16386962
-0.00041664 0.99999980 -0.00048002 0.13587402
0.00104057 0.00048046 0.99999934 -0.28868072
Axis 0.39382395 -0.85340745 -0.34146511
Axis point 262.03978653 0.00000000 139.44917308
Rotation angle (degrees) 0.06986817
Shift along axis 0.04715428
> fitmap #1 inMap #5
Fit molecule tubab-all-merge-fit.pdb (#1) to map
cryosparc_P101_J88__localfilter.mrc (#5) using 10095 atoms
average map value = 0.3759, steps = 60
shifted from previous position = 0.0188
rotated from previous position = 0.0172 degrees
atoms outside contour = 4130, contour level = 0.086099
Position of tubab-all-merge-fit.pdb (#1) relative to
cryosparc_P101_J88__localfilter.mrc (#5) coordinates:
Matrix rotation and translation
0.99999956 0.00053267 -0.00077193 0.08710711
-0.00053299 0.99999977 -0.00041565 0.14260083
0.00077171 0.00041606 0.99999962 -0.21474246
Axis 0.40534097 -0.75230935 -0.51935473
Axis point 251.69290156 0.00000000 91.92876973
Rotation angle (degrees) 0.05878191
Shift along axis 0.03955566
> ui tool show "Fit in Map"
Opened tubab-all-merge-fit.pdb map 5 as #2, grid size 82,68,82, pixel 1.67,
shown at level 0.109, step 1, values float32
Fit map tubab-all-merge-fit.pdb map 5 in map
cryosparc_P101_J88__localfilter.mrc using 34784 points
correlation = 0.5335, correlation about mean = 0.4613, overlap = 2953
steps = 60, shift = 0.0409, angle = 0.132 degrees
Position of tubab-all-merge-fit.pdb map 5 (#2) relative to
cryosparc_P101_J88__localfilter.mrc (#5) coordinates:
Matrix rotation and translation
0.99999911 -0.00125798 0.00043830 0.15810061
0.00125781 0.99999914 0.00038338 -0.29498300
-0.00043878 -0.00038283 0.99999983 0.13988260
Axis -0.27638059 0.31637297 0.90748108
Axis point 232.07012469 123.29990439 0.00000000
Rotation angle (degrees) 0.07942002
Shift along axis -0.01007977
Average map value = 0.3762 for 10095 atoms, 4113 outside contour
> volume #5 level 0.07665
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202110261847 (2021-10-26)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 20.19.15.4703
OpenGL renderer: Intel(R) Iris(TM) Graphics 6100
OpenGL vendor: Intel
Manufacturer: Acer
Model: Aspire E5-573
OS: Microsoft Windows 10 Home (Build 19042)
Memory: 8,501,141,504
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i5-5257U CPU @ 2.70GHz
OSLanguage: en-US
Locale: ('en_NL', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.1.4
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202110261847
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.2
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.4
ChimeraX-ModelPanel: 1.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.4
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.5
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.6
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.10.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.5.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.2.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.0
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.21
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.1
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Structure Comparison |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Model tiling: 'NoneType' object is not iterable |
comment:2 by , 4 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Fixed tile command when no model specifier given.
Actual bug reported here was a crash "access violation" apparently when adjusting volume contour level.
The many "Windows fatal exception: code 0x8001010e" errors are remote procedure call failed seemingly related to the Qt open file dialog and are not fatal. We don't currently have a way to filter those out, and they appear to come from multiple threads so the faulthandler python tracebacks get interleaved.
Note:
See TracTickets
for help on using tickets.
There is also a ridiculous number of "fatal exceptions" reported, given that only 6 models were opened during the session (had to delete hundreds of lines because the ticket was too big otherwise)