![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5462 closed defect (can't reproduce)
Crash with largely trashed stack
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [39745]
Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Translated)
Parent Process: ??? [1]
Responsible: ChimeraX [39745]
User ID: 501
Date/Time: 2021-10-24 19:32:27.736 -0600
OS Version: macOS 11.3.1 (20E241)
Report Version: 12
Anonymous UUID: 98AE7FC8-17A6-DBFF-22F3-B44B72B63E3B
Sleep/Wake UUID: 4AB4F7EB-4800-4E43-8C72-88AB96945113
Time Awake Since Boot: 22000 seconds
Time Since Wake: 1900 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x000000010aa05950
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10
Termination Reason: Namespace SIGNAL, Code 0xa
Terminating Process: exc handler [39745]
VM Regions Near 0x10aa05950:
Rosetta Generic 10a836000-10a837000 [ 4K] rw-/rwx SM=PRV
--> mapped file 10a837000-10aa6e000 [ 2268K] r-x/rwx SM=COW Object_id=3179fec9
mapped file 10aa6e000-10aaa8000 [ 232K] rw-/rwx SM=COW Object_id=2cb421c9
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_platform.dylib 0x00007fff2039d552 _platform_strlen + 18
1 ??? 0x000000010a9dc667 ???
2 libsystem_platform.dylib 0x00007fff2039fd7d _sigtramp + 29
3 select.cpython-38-darwin.so 000000000000000000 0 + 0
4 com.apple.CoreFoundation 0x00007fff204521c6 __CFRunLoopRun + 1663
5 com.apple.CoreFoundation 0x00007fff20451480 CFRunLoopRunSpecific + 567
6 ??? 0x00007fff288d5203 ???
7 ??? 0x00007fff288d4f65 ???
8 ??? 0x00007fff288d4d03 ???
9 ??? 0x00007fff22b77b32 ???
10 ??? 0x00007fff22b76305 ???
11 ??? 0x00007fff22b68679 ???
12 ??? 0x0000000148fa562f ???
13 ??? 0x0000000123da5acf ???
14 ??? 0x0000000123daa042 ???
15 ??? 0x00000001269a4702 ???
16 ??? 0x000000010a8580c2 ???
17 ??? 0x000000010a857a85 ???
18 ??? 0x000000010a926665 ???
19 ??? 0x000000010a92346e ???
20 ??? 0x000000010a8583d0 ???
21 ??? 0x000000010a85aa9a ???
22 ??? 0x000000010a92660c ???
23 ??? 0x000000010a92346e ???
24 ??? 0x000000010a927454 ???
25 ??? 0x000000010a85856e ???
26 ??? 0x000000010a92660c ???
27 ??? 0x000000010a923505 ???
28 ??? 0x000000010a927454 ???
29 ??? 0x000000010a91cf44 ???
30 ??? 0x000000010a91a332 ???
31 ??? 0x000000010a8945ff ???
32 ??? 0x000000010a92660c ???
33 ??? 0x000000010a923505 ???
34 ??? 0x000000010a927454 ???
35 ??? 0x000000010a85856e ???
36 ??? 0x000000010a92660c ???
37 ??? 0x000000010a923505 ???
38 ??? 0x000000010a927454 ???
39 ??? 0x000000010a85856e ???
40 ??? 0x000000010a857dad ???
41 ??? 0x000000010a989eb3 ???
42 ??? 0x000000010a989585 ???
43 ??? 0x000000010a989bdf ???
44 ??? 0x000000010a989aeb ???
45 ??? 0x000000010256cdc8 ???
46 libdyld.dylib 0x00007fff20375f3d start + 1
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x00007ffdffe9a878 0x7ffdffe99000 + 6264
1 runtime 0x00007ffdffea4d70 0x7ffdffe99000 + 48496
2 runtime 0x00007ffdffea5a40 0x7ffdffe99000 + 51776
Thread 2:
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000010c93427b ???
3 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 3:
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000010c93427b ???
3 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 4:
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000010c93427b ???
3 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 5:
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000010c93427b ???
3 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 6:
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000010c93427b ???
3 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 7:
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000010c93427b ???
3 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 8:
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000010c93427b ???
3 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 9:: ThreadPoolServiceThread
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032e1ea kevent64 + 10
2 ??? 0x000000012c5e0cc7 ???
3 ??? 0x000000012c56962b ???
4 ??? 0x000000012c52d7cb ???
5 ??? 0x000000012c574a94 ???
6 ??? 0x000000012c588a7d ???
7 ??? 0x000000012c5d1e07 ???
8 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 10:: ThreadPoolBackgroundWorker
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c57e778 ???
4 ??? 0x000000012c57f150 ???
5 ??? 0x000000012c57ec44 ???
6 ??? 0x000000012c5d1e07 ???
7 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 11:: Chrome_IOThread
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032e1ea kevent64 + 10
2 ??? 0x000000012c5e0cc7 ???
3 ??? 0x000000012c56962b ???
4 ??? 0x000000012c52d7cb ???
5 ??? 0x00000001304adf06 ???
6 ??? 0x000000012c588a7d ???
7 ??? 0x000000012c5d1e07 ???
8 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c4fe1db ???
5 ??? 0x000000012c56962b ???
6 ??? 0x000000012c52d7cb ???
7 ??? 0x000000012c588a7d ???
8 ??? 0x000000012c5d1e07 ???
9 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 13:: CompositorTileWorker1
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff20327d4e __psynch_cvwait + 10
2 ??? 0x000000012c5cde18 ???
3 ??? 0x000000012d8855f8 ???
4 ??? 0x000000012c5d1e07 ???
5 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 14:: Chrome_InProcGpuThread
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c4fe20f ???
4 ??? 0x000000012c56962b ???
5 ??? 0x000000012c52d7cb ???
6 ??? 0x000000012c588a7d ???
7 ??? 0x000000012c5d1e07 ???
8 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 15:: Chrome_ChildIOThread
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032e1ea kevent64 + 10
2 ??? 0x000000012c5e0cc7 ???
3 ??? 0x000000012c56962b ???
4 ??? 0x000000012c52d7cb ???
5 ??? 0x000000012c588a7d ???
6 ??? 0x000000012c5d1e07 ???
7 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 16:: VizCompositorThread
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c4fe1db ???
5 ??? 0x000000012c56962b ???
6 ??? 0x000000012c52d7cb ???
7 ??? 0x000000012c588a7d ???
8 ??? 0x000000012c5d1e07 ???
9 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 17:: NetworkConfigWatcher
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c4fe1db ???
5 ??? 0x000000012c56962b ???
6 ??? 0x000000012c52d7cb ???
7 ??? 0x000000012c588a7d ???
8 ??? 0x000000012c5d1e07 ???
9 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 18:: NetworkConfigWatcher
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c4fe1db ???
5 ??? 0x000000012c56962b ???
6 ??? 0x000000012c52d7cb ???
7 ??? 0x000000012c588a7d ???
8 ??? 0x000000012c5d1e07 ???
9 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 19:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c57e76a ???
5 ??? 0x000000012c57f150 ???
6 ??? 0x000000012c57ed34 ???
7 ??? 0x000000012c5d1e07 ???
8 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 20:: MemoryInfra
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c4fe1db ???
5 ??? 0x000000012c56962b ???
6 ??? 0x000000012c52d7cb ???
7 ??? 0x000000012c588a7d ???
8 ??? 0x000000012c5d1e07 ???
9 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 21:: NetworkConfigWatcher
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c4fe1db ???
5 ??? 0x000000012c56962b ???
6 ??? 0x000000012c52d7cb ???
7 ??? 0x000000012c588a7d ???
8 ??? 0x000000012c5d1e07 ???
9 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 22:: com.apple.NSEventThread
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 com.apple.CoreFoundation 0x00007fff204539c5 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff2045207b __CFRunLoopRun + 1332
4 com.apple.CoreFoundation 0x00007fff20451480 CFRunLoopRunSpecific + 567
5 ??? 0x00007fff22cfdbaa ???
6 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 23:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c5d62cf ???
4 ??? 0x000000012c57e76a ???
5 ??? 0x000000012c57ee3d ???
6 ??? 0x000000012c57ec74 ???
7 ??? 0x000000012c5d1e07 ???
8 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 24:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe94576ab8 ???
1 libsystem_kernel.dylib 0x00007fff2032532a mach_msg_trap + 10
2 ??? 0x000000012c5d6492 ???
3 ??? 0x000000012c57e778 ???
4 ??? 0x000000012c57f150 ???
5 ??? 0x000000012c57ecd4 ???
6 ??? 0x000000012c5d1e07 ???
7 libsystem_pthread.dylib 0x00007fff2035a954 _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203564a7 thread_start + 15
Thread 25:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 26:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 27:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 28:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 29:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 30:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 31:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 32:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 33:
0 runtime 0x00007ffdffef399c 0x7ffdffe99000 + 371100
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0xffffffffffffffff rbx: 0x000000010aaa6620 rcx: 0x000000010aa0595c rdx: 0x000000010aa0595c
rdi: 0x000000010aa05950 rsi: 0x000000010a9facc3 rbp: 0x00007ff3e0047fa0 rsp: 0x00007ff3e0047fa0
r8: 0x000000010bb55088 r9: 0x700945d873584d56 r10: 0x0000000202769eac r11: 0x00006000030ed428
r12: 0x0000000000000000 r13: 0x000000000000000a r14: 0x000000000000000b r15: 0x000000010aa0595c
rip: 0x00007fff2039d552 rfl: 0x0000000000000202
Binary Images:
0 - 0xffffffffffffffff +select.cpython-38-darwin.so (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
0x202692000 - 0x20272dfff dyld (851.27) /usr/lib/dyld
0x7ffdffe99000 - 0x7ffdfff0cfff +runtime (203.42) /Library/Apple/*/runtime
0x7fff20092000 - 0x7fff20093fff libsystem_blocks.dylib (79) /usr/lib/system/libsystem_blocks.dylib
0x7fff20094000 - 0x7fff200c9fff libxpc.dylib (2038.100.48) /usr/lib/system/libxpc.dylib
0x7fff200ca000 - 0x7fff200e1fff libsystem_trace.dylib (1277.100.21) /usr/lib/system/libsystem_trace.dylib
0x7fff200e2000 - 0x7fff2017ffff libcorecrypto.dylib (1000.100.38) /usr/lib/system/libcorecrypto.dylib
0x7fff20180000 - 0x7fff201acfff libsystem_malloc.dylib (317.100.9) /usr/lib/system/libsystem_malloc.dylib
0x7fff201ad000 - 0x7fff201f1fff libdispatch.dylib (1271.100.5) /usr/lib/system/libdispatch.dylib
0x7fff201f2000 - 0x7fff2022bfff libobjc.A.dylib (824) /usr/lib/libobjc.A.dylib
0x7fff2022c000 - 0x7fff2022efff libsystem_featureflags.dylib (28.60.1) /usr/lib/system/libsystem_featureflags.dylib
0x7fff2022f000 - 0x7fff202b7fff libsystem_c.dylib (1439.100.3) /usr/lib/system/libsystem_c.dylib
0x7fff202b8000 - 0x7fff2030dfff libc++.1.dylib (905.6) /usr/lib/libc++.1.dylib
0x7fff2030e000 - 0x7fff20323fff libc++abi.dylib (905.6) /usr/lib/libc++abi.dylib
0x7fff20324000 - 0x7fff20353fff libsystem_kernel.dylib (7195.101.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff20354000 - 0x7fff2035ffff libsystem_pthread.dylib (454.100.8) /usr/lib/system/libsystem_pthread.dylib
0x7fff20360000 - 0x7fff2039bfff libdyld.dylib (851.27) /usr/lib/system/libdyld.dylib
0x7fff2039c000 - 0x7fff203a5fff libsystem_platform.dylib (254.80.2) /usr/lib/system/libsystem_platform.dylib
0x7fff203a6000 - 0x7fff203d1fff libsystem_info.dylib (542.40.3) /usr/lib/system/libsystem_info.dylib
0x7fff203d2000 - 0x7fff2086ffff com.apple.CoreFoundation (6.9 - 1775.118.101) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff22460000 - 0x7fff226bffff libicucore.A.dylib (66112) /usr/lib/libicucore.A.dylib
0x7fff226c0000 - 0x7fff226c9fff libsystem_darwin.dylib (1439.100.3) /usr/lib/system/libsystem_darwin.dylib
0x7fff22adf000 - 0x7fff22aeafff libsystem_notify.dylib (279.40.4) /usr/lib/system/libsystem_notify.dylib
0x7fff24a6c000 - 0x7fff24a7afff libsystem_networkextension.dylib (1295.101.1) /usr/lib/system/libsystem_networkextension.dylib
0x7fff24ad9000 - 0x7fff24aeffff libsystem_asl.dylib (385) /usr/lib/system/libsystem_asl.dylib
0x7fff261e7000 - 0x7fff261eefff libsystem_symptoms.dylib (1431.100.22) /usr/lib/system/libsystem_symptoms.dylib
0x7fff284ee000 - 0x7fff284fefff libsystem_containermanager.dylib (318.100.4) /usr/lib/system/libsystem_containermanager.dylib
0x7fff29205000 - 0x7fff29208fff libsystem_configuration.dylib (1109.101.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff29209000 - 0x7fff2920dfff libsystem_sandbox.dylib (1441.101.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff29e0d000 - 0x7fff29e0ffff libquarantine.dylib (119.40.2) /usr/lib/system/libquarantine.dylib
0x7fff2a3ab000 - 0x7fff2a3b7fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff2a3b8000 - 0x7fff2a3bcfff libsystem_coreservices.dylib (127) /usr/lib/system/libsystem_coreservices.dylib
0x7fff2a5b9000 - 0x7fff2a5cbfff libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff2a5cc000 - 0x7fff2a617fff libsystem_m.dylib (3186.100.3) /usr/lib/system/libsystem_m.dylib
0x7fff2a619000 - 0x7fff2a61efff libmacho.dylib (980) /usr/lib/system/libmacho.dylib
0x7fff2a63b000 - 0x7fff2a646fff libcommonCrypto.dylib (60178.100.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff2a647000 - 0x7fff2a651fff libunwind.dylib (201) /usr/lib/system/libunwind.dylib
0x7fff2a652000 - 0x7fff2a659fff liboah.dylib (203.42) /usr/lib/liboah.dylib
0x7fff2a65a000 - 0x7fff2a664fff libcopyfile.dylib (173.40.2) /usr/lib/system/libcopyfile.dylib
0x7fff2a665000 - 0x7fff2a66cfff libcompiler_rt.dylib (102.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff2a66d000 - 0x7fff2a66ffff libsystem_collections.dylib (1439.100.3) /usr/lib/system/libsystem_collections.dylib
0x7fff2a670000 - 0x7fff2a672fff libsystem_secinit.dylib (87.60.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff2a673000 - 0x7fff2a675fff libremovefile.dylib (49.101.1) /usr/lib/system/libremovefile.dylib
0x7fff2a676000 - 0x7fff2a676fff libkeymgr.dylib (31) /usr/lib/system/libkeymgr.dylib
0x7fff2a677000 - 0x7fff2a67efff libsystem_dnssd.dylib (1310.100.10) /usr/lib/system/libsystem_dnssd.dylib
0x7fff2a67f000 - 0x7fff2a684fff libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff2a685000 - 0x7fff2a686fff libSystem.B.dylib (1292.100.5) /usr/lib/libSystem.B.dylib
0x7fff2a687000 - 0x7fff2a68afff libfakelink.dylib (3) /usr/lib/libfakelink.dylib
0x7fff2a68b000 - 0x7fff2a68bfff com.apple.SoftLinking (1.0 - 1) /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking
0x7fff2dbcf000 - 0x7fff2dbcffff liblaunch.dylib (2038.100.48) /usr/lib/system/liblaunch.dylib
0x7fff30053000 - 0x7fff30053fff libsystem_product_info_filter.dylib (8.40.1) /usr/lib/system/libsystem_product_info_filter.dylib
Translated Code Information:
tmp0: 0x00007ffe9498b37c tmp1: 0x000000010ae45e40 tmp2: 0x00007fff2039d540
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=518.6M resident=0K(0%) swapped_out_or_unallocated=518.6M(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 3264K 6
CG image 164K 15
CoreAnimation 72K 10
CoreGraphics 12K 2
CoreUI image data 2440K 19
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 378.2M 73
MALLOC guard page 192K 8
MALLOC_MEDIUM (reserved) 880.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 6
OpenGL GLSL 384K 5
Rosetta Arena 2048K 1
Rosetta Generic 1516K 376
Rosetta IndirectBranch 1024K 1
Rosetta JIT 128.0M 1
Rosetta Return Stack 660K 66
Rosetta Thread Context 660K 66
STACK GUARD 36K 9
Stack 136.6M 33
Stack Guard 56.1M 24
VM_ALLOCATE 97.8M 161
VM_ALLOCATE (reserved) 160.1M 10 reserved VM address space (unallocated)
__DATA 500K 50
__DATA_CONST 2983K 40
__DATA_DIRTY 95K 24
__LINKEDIT 506.2M 5
__OBJC_RO 70.1M 1
__OBJC_RW 2480K 2
__TEXT 12.5M 50
__UNICODE 588K 1
dylib 2088K 23
dylib (reserved) 88K 6 reserved VM address space (unallocated)
mapped file 5.3G 844
shared memory 8416K 36
unshared pmap 10.5M 6
=========== ======= =======
TOTAL 8.1G 1994
TOTAL, minus reserved VM space 6.7G 1994
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.5.9
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 4 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 11.3.1 (20E241)
Kernel Version: Darwin 20.4.0
Time since boot: 2 days 9:53
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash with largely trashed stack |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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