The following bug report has been submitted:
Platform: Windows-10-10.0.19041
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
(Describe the actions that caused this problem to occur here)
Trying to save the image in high res
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/COMPLEX_FINAL_MODEL.pdb
> J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex.pdb
> J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/ELF_complex.pdb
Summary of feedback from opening
J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/COMPLEX_FINAL_MODEL.pdb
---
warning | Ignored bad PDB record found on line 12125
END
Summary of feedback from opening
J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/DHS_complex.pdb
---
warning | Ignored bad PDB record found on line 11359
END
Summary of feedback from opening
J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/FINAL_MODEL/ELF_complex.pdb
---
warning | Ignored bad PDB record found on line 1066
END
Chain information for COMPLEX_FINAL_MODEL.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
Chain information for DHS_complex.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
Chain information for ELF_complex.pdb #3
---
Chain | Description
E | No description available
> Coloring complex:
Unknown command: Coloring complex:
> colour #7/E #ad7b93
> colour #7/A #8dabcc
> colour #7/B #d7bc73
> colour #7/C #b15c63
> colour #7/D #55926e
> colour #1/E #ad7b93
> colour #1/A #8dabcc
> colour #1/B #d7bc73
> colour #1/C #b15c63
> colour #1/D #55926e
> colour #1/D #667c94
> colour #1/D #435161
> colour #1/C #8f7c4c
> set bgColor white
> show atoms
> hide atoms
> show cartoons
> hide #!2 models
> hide #3 models
> graphics silhouettes true
> lighting simple
> lighting soft
> lighting flat
> colour #1/D #4b7383
> lighting flat
> lighting full
> open J:/Projekty/DHS_K329A_ELF1_cryoEM_022021/J147_inverted_finalmap.mrc
Opened J147_inverted_finalmap.mrc as #4, grid size 256,256,256, pixel 0.86,
shown at level 0.106, step 1, values float32
> surface dust #4
> volume #4 level 0.12
> color #!1 bychain
> color #!1 bychain
> color #!1 bychain
> colour #1/D #4b7383
> colour #1/C #8f7c4c
> colour #1/B #d7bc73
> colour #1/A #8dabcc
> colour #1/E #ad7b93
> color zone #4 near #1 distance 5.16
> volume #4 level 0.15
> volume #4 level 0.16
> vop #4 rmslevel 3.5
> surface dust #4 4
Expected a keyword
> surface dust #4 size 4
> surface dust #4 size 9
> surface dust #4 size 10
> surface dust #4 size 15
> surface dust #4 size 20
> hide #!4 models
> show #!4 models
> hide #!1 models
> show #!1 models
> lighting soft
> lighting soft
> lighting simple
> lighting soft
> lighting full
> set bgColor black
> set bgColor black
> set bgColor white
> show #!1 cartoons
> hide #!4 models
> lighting simple
> lighting soft
> show #!4 models
> volume style surface
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting flat
> lighting flat
> lighting full
> lighting soft
> graphics silhouettes false
> lighting shadows true intensity 0.5
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> lighting simple
> colour #1/D #536579
> hide #!4 models
Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.
> show #!4 models
> colour #1/D #536579
> color zone #4 near #1 distance 5.16
> surface dust #4 size 8.6
> surface dust #4 size 8.6
> surface dust #4 size 8.6
> surface dust #4 size 8.6
> colour #1/C #f7d884
> color zone #4 near #1 distance 5.16
> colour #1/C #8f7c4c
> color zone #4 near #1 distance 5.16
> colour #1/B #efd264
> colour #1/C #a1ba9a
> colour #1/D #c0bcb6
> color zone #4 near #1 distance 5.16
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting soft
> lighting full
> graphics silhouettes true
> lighting soft
> lighting full
> lighting soft
> surface dust #4 size 15
> lighting simple
> lighting soft
> lighting flat
> lighting full
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting shadows true
> lighting shadows false
> save C:\Users\Admin\Desktop\image4.png supersample 3
> hide #!4 models
> save C:\Users\Admin\Desktop\image5.png supersample 3
> lighting shadows true
> graphics silhouettes false
> lighting soft
> lighting soft
> lighting simple
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
QMainWindowLayout::tabPosition called with out-of-bounds value '0'
> lighting flat
> lighting flat
> lighting full
> lighting soft
> lighting full
> lighting soft
> lighting gentle
> save C:\Users\Admin\Desktop\image6.png supersample 3
> show #!4 models
> hide #!1 models
> save C:\Users\Admin\Desktop\image7.png supersample 3
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting gentle
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting flat
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting gentle
> show #!1 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> save C:\Users\Admin\Desktop\image8.png supersample 3
> hide #!4 models
> show #!1 models
> graphics silhouettes true
> save C:\Users\Admin\Desktop\image9.png supersample 3
> toolshed show
> view
> ui tool show "Basic Actions"
Non-native QFileDialog supports only local files
Non-native QFileDialog supports only local files
> save C:/Users/Admin/Desktop/obrazki_complex/overall_complex.positions
Must specify models when saving positions file
C:/Users/Admin/Desktop/obrazki_complex/overall_complex.positions.
> show #!4 models
> lighting flat
> lighting flat
> graphics silhouettes false
> lighting flat
> lighting flat
> lighting full
> lighting soft
> graphics silhouettes false
> lighting gentle
> save overal_complex models #1 #4 [ format positions ]
Cannot determine format for 'overal_complex'
> save overal_complex models #1 #4 [ .positions ]
Cannot determine format for 'overal_complex'
> save overal_complex models #1 #4 .positions]
Cannot determine format for 'overal_complex'
> save overal_complex models #1 #4 .positions
Cannot determine format for 'overal_complex'
> save overal_complex models #1 #4 [.positions]
Cannot determine format for 'overal_complex'
> save overal_complex models #1 #4 [ format positions ] [ childModels true |
> false ]
Cannot determine format for 'overal_complex'
> save overal_complex models #1 #4 [ format positions ] [ childModels true ]
Cannot determine format for 'overal_complex'
> save overal_complex.positions models #1 #4 [ format positions ] [
> childModels true ]
Expected a keyword
> save overal_complex.positions models #1 #4
> turn x 90
> turn x -90
> turn y 90
> turn y 120
> turn y -180
> turn z 90
> turn z -90
> turn x 90
> save overal_complex_x90.positions models #1 #4
> pwd
Current working directory is: C:\ProgramData\ChimeraX
QWindowsNativeFileDialogBase::shellItem : Unhandled scheme: "data"
> open C:/ProgramData/ChimeraX/overal_complex.positions
Must specify models when opening positions file
C:/ProgramData/ChimeraX/overal_complex.positions.
> open overal_complex.positions models #1 #4
Set 2 positions
> open overal_complex.positions models #1
Set 2 position for model COMPLEX_FINAL_MODEL.pdb
> open overal_complex.positions models #1 [ childModels false ] [ matchNames
> false ]
Expected a keyword
> open overal_complex.positions models #1 [ childModels false ] [ matchNames
> false ]
Expected a keyword
> open overal_complex.positions models #1 [ childModels false ] [ matchNames
> false ]
Expected a keyword
> ui tool show "Map Coordinates"
> hide #!1 models
> show #!1 models
> hide #!1 models
> hide #!4 models
> show #!1 models
> graphics silhouettes true
> cartoon style #1 xsection oval modeHelix default
> cartoon style #1 xsection rectangle modeHelix default
> cartoon style #1 modeHelix tube sides 20
> cartoon style #1 modeHelix tube sides 20
> cartoon style (#1 & coil) xsection oval
> cartoon style #1 xsection barbell modeHelix default
> cartoon style #1 xsection oval modeHelix default
> show #!2 models
> show #3 models
> colour #2/B #efd264
> colour #2/C #a1ba9a
> colour #2/D #c0bcb6
> colour #2/A #8dabcc
> colour #3/E #ad7b93
> hide #!1 models
> view orient
> view orient
> view orient
> turn x 90
> turn x 90
> view orient
> view
> view
> view
> view
> turn x 90
> view
> view
> view
> view
> view orient
> turn y 90
> turn y -90
> turn z -90
> turn z 90
> turn x 180
> turn y 180
> turn y 180
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> view orient
> turn y 90
> turn x 90
> turn x 90
> turn z 90
> turn z 180
> turn z 3
> turn z 2
> turn z -1
> view orient
> view
> turn y 90
> turn x 90
> turn x 90
> turn z 90
> turn z 180
> turn z 3
> turn z 2
> turn z -1
> save C:\Users\Admin\Desktop\image10.png supersample 3
> hide #!2 models
> hide #3 models
> show #!4 models
> graphics silhouettes false
> save C:\Users\Admin\Desktop\image11.png supersample 3
> save volume_overall.png 2500 3000 600 true
Expected a keyword
> save volume_overall.png widith 2500 height 3000 pixelSize 600
Expected a keyword
> save volume_overall.png width 2500 height 3000 pixelSize 600
Cannot specify width or height if pixel_size is given
> save volume_overall.png width 2500 height 3000 pixelSize 600
Cannot specify width or height if pixel_size is given
> save volume_overall.png width 2500 height 3000 pixelSize 1.2
Cannot specify width or height if pixel_size is given
> save volume_overall.png width 2500 height 3000
> save volume_overall.png width 25000 height 30000 supersample 9
> transparentBackground true
> hide #!4 models
> show #3 models
> show #!2 models
> graphics silhouettes true
> save structure_overall.png width 25000 height 30000 supersample 9
> transparentBackground true
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 280, in execute
cmd.run(cmd_text)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2852, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 87, in provider_save
provider_info.bundle_info.run_provider(session, provider_info.format_name,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\image_formats\\__init__.py", line 45, in save
save_image(session, path, format_name, **kw)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\image_formats\save.py", line 119, in save_image
i = view.image(width, height, supersample=supersample,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\view.py", line 456, in image
self.draw(c, drawings, swap_buffers = False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\view.py", line 165, in draw
self._draw_scene(camera, drawings)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\view.py", line 212, in _draw_scene
silhouette.start_silhouette_drawing(r)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 1745, in start_silhouette_drawing
fb = self._silhouette_framebuffer(r)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 1781, in _silhouette_framebuffer
dt.initialize_depth(size, depth_compare_mode=False)
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2904, in initialize_depth
self.initialize_texture(size, format, iformat, tdtype, ncomp,
File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
packages\chimerax\graphics\opengl.py", line 2930, in initialize_texture
GL.glTexImage2D(gl_target, 0, iformat, size[0], size[1], 0, format,
File "src/latebind.pyx", line 39, in
OpenGL_accelerate.latebind.LateBind.__call__
File "src/wrapper.pyx", line 318, in
OpenGL_accelerate.wrapper.Wrapper.__call__
File "src/wrapper.pyx", line 311, in
OpenGL_accelerate.wrapper.Wrapper.__call__
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1285,
description = b'za ma\xb3o pami\xeaci',
baseOperation = glTexImage2D,
pyArgs = (
GL_TEXTURE_2D,
0,
GL_DEPTH_COMPONENT24,
25000,
30000,
0,
GL_DEPTH_COMPONENT,
GL_FLOAT,
c_void_p(None),
),
cArgs = (
GL_TEXTURE_2D,
0,
GL_DEPTH_COMPONENT24,
25000,
30000,
0,
GL_DEPTH_COMPONENT,
GL_FLOAT,
c_void_p(None),
),
cArguments = (
GL_TEXTURE_2D,
0,
GL_DEPTH_COMPONENT24,
25000,
30000,
0,
GL_DEPTH_COMPONENT,
GL_FLOAT,
c_void_p(None),
)
)
OpenGL.error.GLError: GLError(
err = 1285,
description = b'za ma\xb3o pami\xeaci',
baseOperation = glTexImage2D,
pyArgs = (
GL_TEXTURE_2D,
0,
GL_DEPTH_COMPONENT24,
25000,
30000,
0,
GL_DEPTH_COMPONENT,
GL_FLOAT,
c_void_p(None),
),
cArgs = (
GL_TEXTURE_2D,
0,
GL_DEPTH_COMPONENT24,
25000,
30000,
0,
GL_DEPTH_COMPONENT,
GL_FLOAT,
c_void_p(None),
),
cArguments = (
GL_TEXTURE_2D,
0,
GL_DEPTH_COMPONENT24,
25000,
30000,
0,
GL_DEPTH_COMPONENT,
GL_FLOAT,
c_void_p(None),
)
)
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 462.31
OpenGL renderer: GeForce GTX 1060 with Max-Q Design/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: G5 5587
OS: Microsoft Windows 10 Home (Build 19042)
Memory: 34,129,870,848
MaxProcessMemory: 137,438,953,344
CPU: 12 Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz
OSLanguage: pl-PL
Locale: ('pl_PL', 'cp1250')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pywin32: 228
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
WMI: 1.5.1
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
ChimeraX is not able to render an image as large as you requested with command
save structure_overall.png width 25000 height 30000 supersample 9 transparentBackground true
One limitation is that your OpenGL graphics driver limits the maximum render buffer size. Recent Nvidia drivers for GTX 10x0, RTX 20x0, 30x0 series allow 32768 maximum size. But your laptop driver may be older and only handle maximum size 16384. Because ChimeraX does not render an image in tiles it cannot make an image larger than that. The supersample 9 setting is not useful. It will cause 81 times (= 9 x 9) times more rendering to be done but I believe you will not notice any improvement beyond supersample 3. Also a 25000 by 30000 image is 750 Mpixels that will take 3 Gbytes of graphics memory for a single image. It probably needs twice that to render or 6 Gbytes. The Nvidia GTX 1060 MaxQ you have either has 3 GB or 6 GB of memory and will not be sufficient to render that size image.
You either need to reduce your image size or use a computer with better graphics.