Opened 4 years ago

Closed 4 years ago

#5559 closed defect (fixed)

Blast Protein: wrapped C/C++ object of type QProgressBar has been deleted

Reported by: chimerax-bug-report@… Owned by: Zach Pearson
Priority: normal Milestone:
Component: Sequence Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett) 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19042
ChimeraX Version: 1.3rc202111030053 (2021-11-03 00:53:46 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.3rc202111030053 (2021-11-03)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:\Users\shrur\Desktop\Comp Bio\Protein modelling\2zvv.pdb" format pdb

2zvv.pdb title:  
Crystal structure of proliferating cellular nuclear antigen 1 and short
peptide from human P21 [more info...]  
  
Chain information for 2zvv.pdb #1  
---  
Chain | Description | UniProt  
A | PCNA 1 | PCNA1_ARATH  
B | PCNA 1 | PCNA1_ARATH  
X | cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN  
Y | cyclin-dependent kinase inhibitor 1 | CDN1A_HUMAN  
  
Non-standard residues in 2zvv.pdb #1  
---  
SO4 — sulfate ion  
  

> select /X/Y

243 atoms, 240 bonds, 35 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> select /B

2051 atoms, 1992 bonds, 343 residues, 1 model selected  

> delete atoms sel

> delete bonds sel

> open C:/Users/shrur/Downloads/AF-Q9M7Q7-F1-model_v1.pdb

AF-Q9M7Q7-F1-model_v1.pdb title:  
Alphafold V2.0 prediction for proliferating cellular nuclear antigen 1
(Q9M7Q7) [more info...]  
  
Chain information for AF-Q9M7Q7-F1-model_v1.pdb #2  
---  
Chain | Description | UniProt  
A | proliferating cellular nuclear antigen 1 | PCNA1_ARATH  
  

> hide #1 models

> show #1 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #1 models

> show #1 models

> hide #2 models

> show #2 models

Drag select of 16 residues  

> undo

> ui tool show AlphaFold

> ui tool show Matchmaker

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> hide #1 models

> show #1 models

> hide #2 models

> show #2 models

> select add #2/A:258

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select add #2/A:257

18 atoms, 16 bonds, 2 residues, 1 model selected  

> select add #2/A:256

27 atoms, 24 bonds, 3 residues, 1 model selected  

> select add #2/A:255

35 atoms, 31 bonds, 4 residues, 1 model selected  

> select subtract #2/A:255

27 atoms, 24 bonds, 3 residues, 1 model selected  

> select add #2/A:259

36 atoms, 32 bonds, 4 residues, 1 model selected  

> select add #2/A:260

44 atoms, 39 bonds, 5 residues, 1 model selected  

> select add #2/A:261

51 atoms, 45 bonds, 6 residues, 1 model selected  

> select add #2/A:262

59 atoms, 52 bonds, 7 residues, 1 model selected  

> select add #2/A:263

67 atoms, 60 bonds, 8 residues, 1 model selected  

> undo

[Repeated 2 time(s)]

> select subtract #2/A:261

44 atoms, 39 bonds, 5 residues, 1 model selected  

> select subtract #2/A:260

36 atoms, 32 bonds, 4 residues, 1 model selected  

> select subtract #2/A:259

27 atoms, 24 bonds, 3 residues, 1 model selected  

> select subtract #2/A:258

18 atoms, 16 bonds, 2 residues, 1 model selected  

> select subtract #2/A:257

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select subtract #2/A:256

Nothing selected  

> toolshed show

> ui tool show "Selection Inspector"

> ui tool show "Show Sequence Viewer"

> sequence chain #1/A

Alignment identifier is 1/A  

> sequence chain #2/A

Alignment identifier is 2/A  

> show #1 target m

> view #1 clip false

[Repeated 1 time(s)]

> ui tool show "Modeller Comparative"

No alignments chosen for modeling  

> select #1/A

2088 atoms, 1994 bonds, 377 residues, 1 model selected  

> ui tool show "Selection Inspector"

> select intersect #1/A

2088 atoms, 1994 bonds, 377 residues, 1 model selected  

> select intersect #2/A

Nothing selected  

> select intersect #1/A

Nothing selected  

> select #1

2088 atoms, 1994 bonds, 377 residues, 1 model selected  

> select #2

2033 atoms, 2062 bonds, 263 residues, 1 model selected  

> select #1

2088 atoms, 1994 bonds, 377 residues, 1 model selected  

> select #2

2033 atoms, 2062 bonds, 263 residues, 1 model selected  

> select #1

2088 atoms, 1994 bonds, 377 residues, 1 model selected  

> select intersect #1/A

2088 atoms, 1994 bonds, 377 residues, 1 model selected  

> select #2

2033 atoms, 2062 bonds, 263 residues, 1 model selected  
Drag select of 38 residues  
Drag select of 20 atoms, 518 residues, 16 bonds  
Drag select of 20 atoms, 494 residues, 16 bonds  
Drag select of 20 atoms, 518 residues, 16 bonds  
[Repeated 1 time(s)]

> select add #1/A:192

2024 atoms, 2070 bonds, 262 residues, 2 models selected  

> select add #1/A:191

2031 atoms, 2077 bonds, 263 residues, 2 models selected  

> select add #1/A:190

2040 atoms, 2085 bonds, 264 residues, 2 models selected  

> select add #1/A:189

2048 atoms, 2092 bonds, 265 residues, 2 models selected  

> select subtract #2/A:187

2041 atoms, 2086 bonds, 264 residues, 2 models selected  

> select add #2/A:187

2048 atoms, 2092 bonds, 265 residues, 2 models selected  

> select subtract #2/A:187

2041 atoms, 2086 bonds, 264 residues, 2 models selected  

> select add #2/A:187

2048 atoms, 2092 bonds, 265 residues, 2 models selected  

> select add #1/A:187

2055 atoms, 2098 bonds, 266 residues, 2 models selected  

> select subtract #2/A:187

2048 atoms, 2092 bonds, 265 residues, 2 models selected  

> select #1

2088 atoms, 1994 bonds, 377 residues, 1 model selected  

> select #2

2033 atoms, 2062 bonds, 263 residues, 1 model selected  

> select subtract #1/A

2033 atoms, 2062 bonds, 263 residues, 1 model selected  

> select add #1/A

4121 atoms, 4056 bonds, 640 residues, 2 models selected  

> ui tool show "Modeller Comparative"

No alignments chosen for modeling  

> ui tool show Matchmaker

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> ui tool show Matchmaker

> matchmaker #2 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
Alignment identifier is 1  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Hiding conservation header for alignment 1  
Chains used in RMSD evaluation for alignment 1: 2zvv.pdb #1/A,
AF-Q9M7Q7-F1-model_v1.pdb #2/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> matchmaker #2 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
Alignment identifier is 2  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2  
Hiding conservation header for alignment 2  
Chains used in RMSD evaluation for alignment 2: 2zvv.pdb #1/A,
AF-Q9M7Q7-F1-model_v1.pdb #2/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> matchmaker #2 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
Alignment identifier is 3  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 3  
Hiding conservation header for alignment 3  
Chains used in RMSD evaluation for alignment 3: 2zvv.pdb #1/A,
AF-Q9M7Q7-F1-model_v1.pdb #2/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> matchmaker #2 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
Alignment identifier is 4  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 4  
Hiding conservation header for alignment 4  
Chains used in RMSD evaluation for alignment 4: 2zvv.pdb #1/A,
AF-Q9M7Q7-F1-model_v1.pdb #2/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> ui tool show "Model Panel"

> ui tool show Matchmaker

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 2zvv.pdb, chain A (#1) with AF-Q9M7Q7-F1-model_v1.pdb, chain A
(#2), sequence alignment score = 1287.6  
RMSD between 242 pruned atom pairs is 0.722 angstroms; (across all 255 pairs:
1.222)  
  
Alignment identifier is 1/A  
Alignment identifier is 2/A  

> ui tool show "Show Sequence Viewer"

> sequence chain #1/A

Alignment identifier is 1/A  

> sequence chain #2/A

Alignment identifier is 2/A  

> blastprotein 1/A:1

ChimeraX REST job id: job_d0jkrkxk  
BlastProtein finished.  
Parsing BLAST results.  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 268, in
_set_progress_bar_maxval  
self.progress_bar.setMaximum(val - 1)  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 52, in
setMaximum  
self._progress_bar.setMaximum(value)  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 52, in
setMaximum  
self._progress_bar.setMaximum(value)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  

[_many_ repetitions of this deleted]

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 258, in
_increment_progress_bar_results  
self._increment_progress_bar("Results")  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 261, in
_increment_progress_bar  
self._progress_bar_step = self.progress_bar.value + 1  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 46, in value  
return self._progress_bar.value()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 274, in
_on_finished_processing_hits  
self.progress_bar.setValue(0)  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 49, in
setValue  
self._progress_bar.setValue(value)  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
RuntimeError: wrapped C/C++ object of type QProgressBar has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 49, in
setValue  
self._progress_bar.setValue(value)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\results.py", line 252, in
_update_progress_bar_text  
self.progress_bar.text = text  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 38, in text  
self._label.setText(text)  
RuntimeError: wrapped C/C++ object of type QLabel has been deleted  
  
RuntimeError: wrapped C/C++ object of type QLabel has been deleted  
  
File "C:\Program Files\ChimeraX 1.3rc202111030053\bin\lib\site-
packages\chimerax\blastprotein\ui\widgets\labelledbar.py", line 38, in text  
self._label.setText(text)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.148201 Core Profile Forward-Compatible Context 20.50.02 27.20.15002.118
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.
Manufacturer: HP
Model: HP Laptop 15s-ey1xxx
OS: Microsoft Windows 10 Home Single Language (Build 19042)
Memory: 7,907,684,352
MaxProcessMemory: 137,438,953,344
CPU: 6 AMD Ryzen 5 4500U with Radeon Graphics         
OSLanguage: en-US
Locale: ('en_IN', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.7
    ChimeraX-AddCharge: 1.1.5
    ChimeraX-AddH: 2.1.10
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.30.2
    ChimeraX-AtomicLibrary: 4.1.5
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3rc202111030053
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.2
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.5
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.5.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.2.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.2
    ParmEd: 3.2.0
    parso: 0.8.2
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.21
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.2
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by pett, 4 years ago

Component: Unassigned → Sequence
Description: modified (diff)
Owner: set to Zach Pearson
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Blast Protein: wrapped C/C++ object of type QProgressBar has been deleted

comment:2 by Zach Pearson, 4 years ago

I think this happens when the user closes the BLAST results window before results are displayed. One fix would be to stop the background worker when the window is closed, another is to remove the progress bar entirely as it's been less useful than expected. Will have a fix in soon.

comment:3 by Zach Pearson, 4 years ago

Resolution: → fixed
Status: assigned → closed

I believe that one of ​this commit or ​this commit fixes this issue (probably the second).

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