![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5480 closed defect (duplicate)
Can't bond an atom to itself
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-20.6.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [14726]
Path: /Applications/ChimeraX-1.1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.1 (1.1.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [14726]
User ID: 501
Date/Time: 2021-10-27 15:47:50.662 +0800
OS Version: macOS 11.5.2 (20G95)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: C3280A8A-B3DC-40C8-D0FA-15214714DACE
Time Awake Since Boot: 28000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
terminating with uncaught exception of type std::invalid_argument: Can't bond an atom to itself
abort() called
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2039192e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff203c05bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff202a4bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20405d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff20315406 abort + 125
6 libc++abi.dylib 0x00007fff20383ef2 abort_message + 241
7 libc++abi.dylib 0x00007fff203755e5 demangling_terminate_handler() + 242
8 libobjc.A.dylib 0x00007fff2026e595 _objc_terminate() + 104
9 libc++abi.dylib 0x00007fff20383307 std::__terminate(void (*)()) + 8
10 libc++abi.dylib 0x00007fff20385dd1 __cxa_rethrow + 99
11 libobjc.A.dylib 0x00007fff2026c110 objc_exception_rethrow + 37
12 com.apple.AppKit 0x00007fff22cafcb2 -[NSApplication run] + 659
13 libqcocoa.dylib 0x000000011f286de3 0x11f251000 + 220643
14 QtCore 0x000000011d8aa93f QEventLoop::exec(QFlags) + 431
15 QtCore 0x000000011d8af932 QCoreApplication::exec() + 130
16 QtWidgets.so 0x000000011c8727d2 meth_QApplication_exec_(_object*, _object*) + 82
17 org.python.python 0x000000010fc83382 _PyMethodDef_RawFastCallKeywords + 226
18 org.python.python 0x000000010fc828b9 _PyCFunction_FastCallKeywords + 41
19 org.python.python 0x000000010fd57b60 call_function + 656
20 org.python.python 0x000000010fd54817 _PyEval_EvalFrameDefault + 26567
21 org.python.python 0x000000010fc82d61 function_code_fastcall + 177
22 org.python.python 0x000000010fd57bd4 call_function + 772
23 org.python.python 0x000000010fd54817 _PyEval_EvalFrameDefault + 26567
24 org.python.python 0x000000010fd58a2c _PyEval_EvalCodeWithName + 3276
25 org.python.python 0x000000010fc82879 _PyFunction_FastCallKeywords + 217
26 org.python.python 0x000000010fd57bd4 call_function + 772
27 org.python.python 0x000000010fd548ae _PyEval_EvalFrameDefault + 26718
28 org.python.python 0x000000010fd58a2c _PyEval_EvalCodeWithName + 3276
29 org.python.python 0x000000010fd4dfb0 PyEval_EvalCode + 48
30 org.python.python 0x000000010fd4b547 builtin_exec + 583
31 org.python.python 0x000000010fc8352d _PyMethodDef_RawFastCallKeywords + 653
32 org.python.python 0x000000010fc828b9 _PyCFunction_FastCallKeywords + 41
33 org.python.python 0x000000010fd57b60 call_function + 656
34 org.python.python 0x000000010fd548ae _PyEval_EvalFrameDefault + 26718
35 org.python.python 0x000000010fd58a2c _PyEval_EvalCodeWithName + 3276
36 org.python.python 0x000000010fc82879 _PyFunction_FastCallKeywords + 217
37 org.python.python 0x000000010fd57bd4 call_function + 772
38 org.python.python 0x000000010fd548ae _PyEval_EvalFrameDefault + 26718
39 org.python.python 0x000000010fd58a2c _PyEval_EvalCodeWithName + 3276
40 org.python.python 0x000000010fc82377 _PyFunction_FastCallDict + 455
41 org.python.python 0x000000010fdb2af3 pymain_run_module + 147
42 org.python.python 0x000000010fdb1bdc pymain_main + 5900
43 org.python.python 0x000000010fdb04c3 Py_Main + 51
44 edu.ucsf.cgl.ChimeraX 0x000000010fc57dc8 main + 120
45 libdyld.dylib 0x00007fff203dbf3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff2038dcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c0e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000011157fc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff2038dcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c0e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000011157fc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff2038dcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c0e49 _pthread_cond_wait + 1298
2 libopenblasp-r0.3.7.dylib 0x000000011157fc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 4:
0 libsystem_pthread.dylib 0x00007fff203bc420 start_wqthread + 0
Thread 5:
0 libsystem_pthread.dylib 0x00007fff203bc420 start_wqthread + 0
Thread 6:
0 libsystem_pthread.dylib 0x00007fff203bc420 start_wqthread + 0
Thread 7:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff204b9b2f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff204b820f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff204b761c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22e4523a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e22f 0x1215dc000 + 35267119
4 QtWebEngineCore 0x000000012373205d 0x1215dc000 + 34955357
5 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
6 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 9:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff2038fc4a kevent + 10
1 QtWebEngineCore 0x0000000123a3f9a9 0x1215dc000 + 38156713
2 QtWebEngineCore 0x0000000123a3ccbd 0x1215dc000 + 38145213
3 QtWebEngineCore 0x00000001237f3cdc 0x1215dc000 + 35749084
4 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
5 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
6 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
7 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 10:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff2038fc4a kevent + 10
1 QtWebEngineCore 0x0000000123a3f9a9 0x1215dc000 + 38156713
2 QtWebEngineCore 0x0000000123a3ccbd 0x1215dc000 + 38145213
3 QtWebEngineCore 0x00000001237f3cc4 0x1215dc000 + 35749060
4 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
5 QtWebEngineCore 0x000000012379ca74 0x1215dc000 + 35392116
6 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 11:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x000000012379665b 0x1215dc000 + 35366491
6 QtWebEngineCore 0x00000001237962c4 0x1215dc000 + 35365572
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 12:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x000000012379665b 0x1215dc000 + 35366491
6 QtWebEngineCore 0x00000001237962c4 0x1215dc000 + 35365572
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 13:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x000000012379665b 0x1215dc000 + 35366491
6 QtWebEngineCore 0x00000001237962c4 0x1215dc000 + 35365572
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 14:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x00000001237963bf 0x1215dc000 + 35365823
6 QtWebEngineCore 0x00000001237962c4 0x1215dc000 + 35365572
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 15:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x00000001237963bf 0x1215dc000 + 35365823
6 QtWebEngineCore 0x0000000123796234 0x1215dc000 + 35365428
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 16:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x000000012379665b 0x1215dc000 + 35366491
6 QtWebEngineCore 0x0000000123796234 0x1215dc000 + 35365428
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 17:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff2038fc4a kevent + 10
1 QtWebEngineCore 0x0000000123a3f9a9 0x1215dc000 + 38156713
2 QtWebEngineCore 0x0000000123a3ccbd 0x1215dc000 + 38145213
3 QtWebEngineCore 0x00000001237f3cc4 0x1215dc000 + 35749060
4 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
5 QtWebEngineCore 0x00000001230c9fe4 0x1215dc000 + 28237796
6 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 18:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e22f 0x1215dc000 + 35267119
4 QtWebEngineCore 0x0000000123795d1a 0x1215dc000 + 35364122
5 QtWebEngineCore 0x00000001237963bf 0x1215dc000 + 35365823
6 QtWebEngineCore 0x0000000123796264 0x1215dc000 + 35365476
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 19:: CompositorTileWorker1/56323
0 libsystem_kernel.dylib 0x00007fff2038dcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203c0e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x00000001237ebfa8 0x1215dc000 + 35717032
3 QtWebEngineCore 0x00000001247724c8 0x1215dc000 + 51995848
4 QtWebEngineCore 0x00000001237ac694 0x1215dc000 + 35456660
5 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
6 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 20:: AudioThread
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e22f 0x1215dc000 + 35267119
4 QtWebEngineCore 0x000000012373205d 0x1215dc000 + 34955357
5 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
6 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 21:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e22f 0x1215dc000 + 35267119
4 QtWebEngineCore 0x000000012373205d 0x1215dc000 + 34955357
5 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
6 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 22:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x0000000123732052 0x1215dc000 + 34955346
4 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
5 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
6 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
7 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 23:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff2038fc4a kevent + 10
1 QtWebEngineCore 0x0000000123a3f9a9 0x1215dc000 + 38156713
2 QtWebEngineCore 0x0000000123a3ccbd 0x1215dc000 + 38145213
3 QtWebEngineCore 0x00000001237f3cdc 0x1215dc000 + 35749084
4 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
5 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
6 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
7 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 24:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e22f 0x1215dc000 + 35267119
4 QtWebEngineCore 0x0000000123795d1a 0x1215dc000 + 35364122
5 QtWebEngineCore 0x000000012379665b 0x1215dc000 + 35366491
6 QtWebEngineCore 0x0000000123796324 0x1215dc000 + 35365668
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 25:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e22f 0x1215dc000 + 35267119
4 QtWebEngineCore 0x000000012373205d 0x1215dc000 + 34955357
5 QtWebEngineCore 0x000000012375b085 0x1215dc000 + 35123333
6 QtWebEngineCore 0x00000001237ad9bc 0x1215dc000 + 35461564
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 26:
0 libsystem_pthread.dylib 0x00007fff203bc420 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff203bc420 start_wqthread + 0
Thread 28:
0 libsystem_pthread.dylib 0x00007fff203bc420 start_wqthread + 0
Thread 29:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x00000001237963bf 0x1215dc000 + 35365823
6 QtWebEngineCore 0x0000000123796234 0x1215dc000 + 35365428
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 30:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2038b2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2038b62c mach_msg + 60
2 QtWebEngineCore 0x000000012377e32d 0x1215dc000 + 35267373
3 QtWebEngineCore 0x000000012377e421 0x1215dc000 + 35267617
4 QtWebEngineCore 0x0000000123795d28 0x1215dc000 + 35364136
5 QtWebEngineCore 0x00000001237963bf 0x1215dc000 + 35365823
6 QtWebEngineCore 0x00000001237962c4 0x1215dc000 + 35365572
7 QtWebEngineCore 0x00000001237ed717 0x1215dc000 + 35723031
8 libsystem_pthread.dylib 0x00007fff203c08fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203bc443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011f6abe00 rcx: 0x00007fa845577a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007fa845577a80 rsp: 0x00007fa845577a58
r8: 0x00007fa845577f48 r9: 0xc3b07cd1e15a9c9a r10: 0x000000011f6abe00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000003000000008 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff2039192e rfl: 0x0000000000000246 cr2: 0x0000600002d6c000
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
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0x7fff3d52e000 - 0x7fff3d539fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d54e000 - 0x7fff3d560fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d561000 - 0x7fff3d564fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d57d000 - 0x7fff3d6ecfff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d6ed000 - 0x7fff3d948fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d949000 - 0x7fff3da5ffff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3da60000 - 0x7fff3da71fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e094000 - 0x7fff3e0f6fff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e0f7000 - 0x7fff3e11cfff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e7d8000 - 0x7fff3e904fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e905000 - 0x7fff3eda5fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3eda6000 - 0x7fff3ee8efff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff40d89000 - 0x7fff40d92fff com.apple.IOAccelMemoryInfo (1.0 - 1) /System/Library/PrivateFrameworks/IOAccelMemoryInfo.framework/Versions/A/IOAccelMemoryInfo
0x7fff40ded000 - 0x7fff40df0fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41215000 - 0x7fff41233fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff437c2000 - 0x7fff43a35fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff46308000 - 0x7fff46313fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff4793e000 - 0x7fff4797efff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff515fb000 - 0x7fff5169afff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff53f22000 - 0x7fff53f58fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff5554f000 - 0x7fff55552fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5ced1000 - 0x7fff5cee0fff libSimplifiedChineseConverter.dylib (90) /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
0x7fff5dc8a000 - 0x7fff5e119fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5e11a000 - 0x7fff5eb7dfff libSC.dylib (4.6.20) /System/Library/Extensions/AMDShared.bundle/Contents/PlugIns/libSC.dylib
0x7fff5eeb2000 - 0x7fff5fe99fff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff6964b000 - 0x7fff6964ffff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6ba96000 - 0x7fff6ba9cfff libCoreFSCache.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6ba9d000 - 0x7fff6baa1fff libCoreVMClient.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6baa2000 - 0x7fff6bab1fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bab2000 - 0x7fff6bab4fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bab5000 - 0x7fff6babdfff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6babe000 - 0x7fff6baf1fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6baf2000 - 0x7fff6bb2efff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bb2f000 - 0x7fff6bcc2fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bcc3000 - 0x7fff6bccdfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bcce000 - 0x7fff6be4bfff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6be4c000 - 0x7fff6be74fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d10d000 - 0x7fff6d165fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6dc8f000 - 0x7fff6deaafff com.apple.AMDMTLBronzeDriver (4.6.20 - 4.0.6) /System/Library/Extensions/AMDMTLBronzeDriver.bundle/Contents/MacOS/AMDMTLBronzeDriver
0x7fff6e00f000 - 0x7fff6e05efff ATIRadeonX4000SCLib.dylib (4.6.20) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/ATIRadeonX4000SCLib.dylib
0x7fff6e20f000 - 0x7fff6e216fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e217000 - 0x7fff6e2fefff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f87c000 - 0x7fff6f88efff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73b90000 - 0x7fff73b9bfff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73db1000 - 0x7fff73dc9fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77941000 - 0x7fff77948fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=986.3M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=986.3M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 3792K 6
CG image 72K 4
CoreAnimation 80K 11
CoreGraphics 12K 2
CoreUI image data 2184K 16
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 278.7M 261
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 120K 30
Stack 173.2M 31
Stack Guard 56.0M 1
VM_ALLOCATE 47.9M 245
VM_ALLOCATE (reserved) 96.0M 1 reserved VM address space (unallocated)
__DATA 41.3M 569
__DATA_CONST 22.4M 254
__DATA_DIRTY 1141K 158
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 523.9M 133
__OBJC_RO 70.2M 1
__OBJC_RW 2496K 2
__TEXT 550.8M 544
__UNICODE 588K 1
mapped file 125.7M 50
shared memory 772K 18
=========== ======= =======
TOTAL 2.3G 2361
TOTAL, minus reserved VM space 1.9G 2361
Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.6.20
OpenGL renderer: AMD Radeon Pro 555 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 429.140.8.0.0
SMC Version (system): 2.45f5
Software:
System Software Overview:
System Version: macOS 11.5.2 (20G95)
Kernel Version: Darwin 20.6.0
Time since boot: 7:52
Graphics/Displays:
Intel HD Graphics 630:
Chipset Model: Intel HD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x591b
Revision ID: 0x0004
Automatic Graphics Switching: Supported
gMux Version: 4.0.29 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 2
Radeon Pro 555:
Chipset Model: Radeon Pro 555
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 2 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00c7
ROM Revision: 113-C980AJ-927
VBIOS Version: 113-C9801AP-A02
EFI Driver Version: 01.A0.927
Automatic Graphics Switching: Supported
gMux Version: 4.0.29 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.0
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Can't bond an atom to itself |
comment:2 by , 4 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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Hi Allen,
--Eric