The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000700014f9b000 (most recent call first):
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 306 in wait
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 558 in wait
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 1252 in run
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 932 in _bootstrap_inner
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/threading.py", line 890 in _bootstrap
Current thread 0x000000010a24fe00 (most recent call first):
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/atomic/struct_edit.py", line 74 in add_atom
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/addh/cmd.py", line 888 in new_hydrogen
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/addh/cmd.py", line 862 in add_altloc_hyds
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/addh/hbond.py", line 895 in _attach_hydrogens
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/addh/hbond.py", line 214 in add_hydrogens
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/addh/cmd.py", line 170 in hbond_add_hydrogens
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/addh/cmd.py", line 63 in cmd_addh
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/coulombic/coulombic.py", line 74 in assign_charges
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/coulombic/cmd.py", line 90 in cmd_coulombic
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/cli.py", line 2852 in run
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/commands/run.py", line 36 in run
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/shortcuts.py", line 511 in run
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/shortcuts.py", line 568 in run_expanded_command
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/shortcuts.py", line 61 in func_plus_tip
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/shortcuts.py", line 326 in run
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/shortcuts.py", line 407 in run_shortcut
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/shortcuts.py", line 389 in try_shortcut
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/shortcuts.py", line 1333 in run_provider
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/shortcuts/__init__.py", line 52 in run_provider
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/toolshed/__init__.py", line 1285 in run_provider
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/core/toolshed/info.py", line 379 in run_provider
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/toolbar/tool.py", line 202 in callback
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main
Process: ChimeraX [2826]
Path: /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [2826]
User ID: 501
Date/Time: 2021-10-21 20:53:02.421 -0400
OS Version: macOS 11.6 (20G165)
Report Version: 12
Anonymous UUID: 6C30B814-BA8B-3445-A0EF-BD1E2CDBA1B0
Sleep/Wake UUID: 9B770A72-F06B-4230-8448-7647C0B5CC8A
Time Awake Since Boot: 8300 seconds
Time Since Wake: 1500 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 1058ca000-1058cb000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2039e92e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff203cd5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff202b1bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20412d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x0000000105926411 dict_traverse + 241
6 org.python.python 0x0000000105a277d4 collect + 692
7 org.python.python 0x0000000105a28744 _PyObject_GC_Alloc + 324
8 org.python.python 0x0000000105a28831 _PyObject_GC_NewVar + 49
9 org.python.python 0x000000010592c006 mbuf_add_view + 86
10 org.python.python 0x000000010592c56d PyMemoryView_FromObject + 189
11 _multiarray_umath.cpython-38-darwin.so 0x000000010626b188 _array_from_array_like + 120
12 _multiarray_umath.cpython-38-darwin.so 0x000000010626b422 discover_dimensions + 418
13 _multiarray_umath.cpython-38-darwin.so 0x000000010626b58f discover_dimensions + 783
14 _multiarray_umath.cpython-38-darwin.so 0x000000010626ae65 PyArray_GetArrayParamsFromObject_int + 629
15 _multiarray_umath.cpython-38-darwin.so 0x000000010626ba32 PyArray_FromAny + 194
16 _multiarray_umath.cpython-38-darwin.so 0x000000010626c108 PyArray_CheckFromAny + 232
17 _multiarray_umath.cpython-38-darwin.so 0x0000000106312b62 _array_fromobject + 866
18 org.python.python 0x00000001058f5018 cfunction_call_varargs + 120
19 org.python.python 0x00000001058f4a85 _PyObject_MakeTpCall + 373
20 org.python.python 0x00000001059c3665 call_function + 533
21 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
22 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
23 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
24 org.python.python 0x00000001059c360c call_function + 444
25 org.python.python 0x00000001059c0598 _PyEval_EvalFrameDefault + 25976
26 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
27 org.python.python 0x00000001059c360c call_function + 444
28 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
29 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
30 org.python.python 0x00000001059c360c call_function + 444
31 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
32 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
33 org.python.python 0x00000001059c360c call_function + 444
34 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
35 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
36 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
37 org.python.python 0x00000001059c360c call_function + 444
38 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
39 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
40 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
41 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
42 org.python.python 0x00000001059c0978 _PyEval_EvalFrameDefault + 26968
43 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
44 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
45 org.python.python 0x00000001059c360c call_function + 444
46 org.python.python 0x00000001059c0598 _PyEval_EvalFrameDefault + 25976
47 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
48 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
49 org.python.python 0x00000001059c360c call_function + 444
50 org.python.python 0x00000001059c0598 _PyEval_EvalFrameDefault + 25976
51 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
52 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
53 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
54 org.python.python 0x00000001059c0978 _PyEval_EvalFrameDefault + 26968
55 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
56 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
57 org.python.python 0x00000001058f7a9a method_vectorcall + 170
58 org.python.python 0x00000001059c360c call_function + 444
59 org.python.python 0x00000001059c0598 _PyEval_EvalFrameDefault + 25976
60 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
61 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
62 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
63 org.python.python 0x00000001059c0978 _PyEval_EvalFrameDefault + 26968
64 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
65 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
66 org.python.python 0x00000001059c360c call_function + 444
67 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
68 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
69 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
70 org.python.python 0x00000001059c360c call_function + 444
71 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
72 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
73 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
74 org.python.python 0x00000001059c360c call_function + 444
75 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
76 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
77 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
78 org.python.python 0x00000001058f7a9a method_vectorcall + 170
79 org.python.python 0x00000001059c360c call_function + 444
80 org.python.python 0x00000001059c0598 _PyEval_EvalFrameDefault + 25976
81 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
82 org.python.python 0x00000001059c360c call_function + 444
83 org.python.python 0x00000001059c044a _PyEval_EvalFrameDefault + 25642
84 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
85 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
86 org.python.python 0x00000001059c360c call_function + 444
87 org.python.python 0x00000001059c044a _PyEval_EvalFrameDefault + 25642
88 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
89 org.python.python 0x00000001059c360c call_function + 444
90 org.python.python 0x00000001059c046e _PyEval_EvalFrameDefault + 25678
91 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
92 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
93 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
94 org.python.python 0x00000001059c0978 _PyEval_EvalFrameDefault + 26968
95 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
96 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
97 org.python.python 0x00000001058f7b7c method_vectorcall + 396
98 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
99 org.python.python 0x00000001059c0978 _PyEval_EvalFrameDefault + 26968
100 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
101 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
102 org.python.python 0x00000001058f7a9a method_vectorcall + 170
103 org.python.python 0x00000001059c360c call_function + 444
104 org.python.python 0x00000001059c0598 _PyEval_EvalFrameDefault + 25976
105 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
106 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
107 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
108 QtCore.abi3.so 0x0000000108e8f99d PyQtSlot::call(_object*, _object*) const + 109
109 QtCore.abi3.so 0x0000000108e8f866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
110 QtCore.abi3.so 0x0000000108e90455 PyQtSlotProxy::unislot(void**) + 85
111 QtCore.abi3.so 0x0000000108e903ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
112 QtCore 0x0000000109273f6e void doActivate(QObject*, int, void**) + 1118
113 QtWidgets 0x0000000111e9c3c6 QAction::activate(QAction::ActionEvent) + 310
114 QtWidgets.abi3.so 0x00000001097b78a5 sipQToolButton::nextCheckState() + 101
115 QtWidgets 0x0000000111f8f000 QAbstractButtonPrivate::click() + 144
116 QtWidgets 0x0000000111f9020f QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 271
117 QtWidgets 0x000000011208ac4f QToolButton::mouseReleaseEvent(QMouseEvent*) + 15
118 QtWidgets.abi3.so 0x00000001097b6989 sipQToolButton::mouseReleaseEvent(QMouseEvent*) + 121
119 QtWidgets 0x0000000111edfdfd QWidget::event(QEvent*) + 445
120 QtWidgets 0x000000011208b40f QToolButton::event(QEvent*) + 319
121 QtWidgets.abi3.so 0x00000001097b729f sipQToolButton::event(QEvent*) + 191
122 QtWidgets 0x0000000111ea59ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
123 QtWidgets 0x0000000111ea8755 QApplication::notify(QObject*, QEvent*) + 6965
124 QtWidgets.abi3.so 0x00000001098d3db9 sipQApplication::notify(QObject*, QEvent*) + 233
125 QtCore 0x0000000109240a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
126 QtWidgets 0x0000000111ea6310 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 896
127 QtWidgets 0x0000000111eff022 QWidgetWindow::handleMouseEvent(QMouseEvent*) + 3266
128 QtWidgets 0x0000000111efd6e9 QWidgetWindow::event(QEvent*) + 233
129 QtWidgets 0x0000000111ea59ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
130 QtWidgets 0x0000000111ea6e11 QApplication::notify(QObject*, QEvent*) + 497
131 QtWidgets.abi3.so 0x00000001098d3db9 sipQApplication::notify(QObject*, QEvent*) + 233
132 QtCore 0x0000000109240a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
133 QtGui 0x0000000112512e2e QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 3534
134 QtGui 0x00000001124f7d7b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 219
135 libqcocoa.dylib 0x000000011fe0b260 QCocoaEventDispatcherPrivate::processPostedEvents() + 320
136 libqcocoa.dylib 0x000000011fe0b9c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
137 com.apple.CoreFoundation 0x00007fff204c52bc __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
138 com.apple.CoreFoundation 0x00007fff204c5224 __CFRunLoopDoSource0 + 180
139 com.apple.CoreFoundation 0x00007fff204c4fa4 __CFRunLoopDoSources0 + 242
140 com.apple.CoreFoundation 0x00007fff204c39cc __CFRunLoopRun + 893
141 com.apple.CoreFoundation 0x00007fff204c2f8c CFRunLoopRunSpecific + 563
142 com.apple.HIToolbox 0x00007fff2870b1f3 RunCurrentEventLoopInMode + 292
143 com.apple.HIToolbox 0x00007fff2870ae26 ReceiveNextEventCommon + 284
144 com.apple.HIToolbox 0x00007fff2870acf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
145 com.apple.AppKit 0x00007fff22ccc172 _DPSNextEvent + 864
146 com.apple.AppKit 0x00007fff22cca945 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
147 com.apple.AppKit 0x00007fff22cbcc69 -[NSApplication run] + 586
148 libqcocoa.dylib 0x000000011fe0a62f QCocoaEventDispatcher::processEvents(QFlags) + 2495
149 QtCore 0x000000010923cacf QEventLoop::exec(QFlags) + 431
150 QtCore 0x0000000109241042 QCoreApplication::exec() + 130
151 QtWidgets.abi3.so 0x00000001099c5702 meth_QApplication_exec_(_object*, _object*) + 82
152 org.python.python 0x00000001058f50c2 cfunction_call_varargs + 290
153 org.python.python 0x00000001058f4a85 _PyObject_MakeTpCall + 373
154 org.python.python 0x00000001059c3665 call_function + 533
155 org.python.python 0x00000001059c046e _PyEval_EvalFrameDefault + 25678
156 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
157 org.python.python 0x00000001058f7a9a method_vectorcall + 170
158 org.python.python 0x00000001059c360c call_function + 444
159 org.python.python 0x00000001059c046e _PyEval_EvalFrameDefault + 25678
160 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
161 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
162 org.python.python 0x00000001059c360c call_function + 444
163 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
164 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
165 org.python.python 0x00000001059b9f44 PyEval_EvalCode + 100
166 org.python.python 0x00000001059b7332 builtin_exec + 626
167 org.python.python 0x00000001059315ff cfunction_vectorcall_FASTCALL + 175
168 org.python.python 0x00000001059c360c call_function + 444
169 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
170 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
171 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
172 org.python.python 0x00000001059c360c call_function + 444
173 org.python.python 0x00000001059c0505 _PyEval_EvalFrameDefault + 25829
174 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
175 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
176 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
177 org.python.python 0x0000000105a26eb3 pymain_run_module + 195
178 org.python.python 0x0000000105a26585 Py_RunMain + 1413
179 org.python.python 0x0000000105a26bdf pymain_main + 223
180 org.python.python 0x0000000105a26aeb Py_Main + 43
181 edu.ucsf.cgl.ChimeraX 0x00000001058cadc8 main + 120
182 libdyld.dylib 0x00007fff203e8f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff2039acde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203cde49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000010a5c927b blas_thread_server + 507
3 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff203a11d2 kevent64 + 10
1 QtWebEngineCore 0x00000001156a0e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x00000001156a0cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000115634a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011563e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011563f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011563ec44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff203a11d2 kevent64 + 10
1 QtWebEngineCore 0x00000001156a0e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x00000001156a0cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011956df06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001155be1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff2039acde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203cde49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011568de18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001169455f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001155be20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff203a11d2 kevent64 + 10
1 QtWebEngineCore 0x00000001156a0e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x00000001156a0cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001155be1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001155be1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011563e76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011563f150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011563ed34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001155be1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 13:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001155be1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001155be1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011562962b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001155ed7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000115648a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff204c549f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff204c3b7f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff204c2f8c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22e5223a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001156962cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011563e76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011563ee3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011563ec74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 17:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203982ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2039862c mach_msg + 60
2 QtWebEngineCore 0x0000000115696492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011563e778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011563f150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011563ecd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000115691e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 18:
0 libsystem_pthread.dylib 0x00007fff203c9420 start_wqthread + 0
Thread 19:
0 libsystem_pthread.dylib 0x00007fff203c9420 start_wqthread + 0
Thread 20:
0 libsystem_pthread.dylib 0x00007fff203c9420 start_wqthread + 0
Thread 21:
0 libsystem_kernel.dylib 0x00007fff2039acde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203cde49 _pthread_cond_wait + 1298
2 org.python.python 0x0000000105a16b2c PyThread_acquire_lock_timed + 700
3 org.python.python 0x0000000105a63c4f acquire_timed + 111
4 org.python.python 0x0000000105a63d60 lock_PyThread_acquire_lock + 48
5 org.python.python 0x00000001058fdef5 method_vectorcall_VARARGS_KEYWORDS + 373
6 org.python.python 0x00000001059c360c call_function + 444
7 org.python.python 0x00000001059c044a _PyEval_EvalFrameDefault + 25642
8 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
9 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
10 org.python.python 0x00000001059c360c call_function + 444
11 org.python.python 0x00000001059c044a _PyEval_EvalFrameDefault + 25642
12 org.python.python 0x00000001059c4454 _PyEval_EvalCodeWithName + 2804
13 org.python.python 0x00000001058f556e _PyFunction_Vectorcall + 270
14 org.python.python 0x00000001059c360c call_function + 444
15 org.python.python 0x00000001059c044a _PyEval_EvalFrameDefault + 25642
16 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
17 org.python.python 0x00000001059c360c call_function + 444
18 org.python.python 0x00000001059c044a _PyEval_EvalFrameDefault + 25642
19 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
20 org.python.python 0x00000001059c360c call_function + 444
21 org.python.python 0x00000001059c044a _PyEval_EvalFrameDefault + 25642
22 org.python.python 0x00000001058f53d0 function_code_fastcall + 128
23 org.python.python 0x00000001058f7adb method_vectorcall + 235
24 org.python.python 0x00000001058f4dad PyVectorcall_Call + 109
25 org.python.python 0x0000000105a6364a t_bootstrap + 74
26 org.python.python 0x0000000105a16619 pythread_wrapper + 25
27 libsystem_pthread.dylib 0x00007fff203cd8fc _pthread_start + 224
28 libsystem_pthread.dylib 0x00007fff203c9443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010a24fe00 rcx: 0x00007f8e81055a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007f8e81055a80 rsp: 0x00007f8e81055a58
r8: 0x00007f8e81055f48 r9: 0x30b8b401b100fe5f r10: 0x000000010a24fe00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000000000000004 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2039e92e rfl: 0x0000000000000246 cr2: 0x00007f8e81055f48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
48 8b 71 08 48 83 e6 03-48 09 c6 48 89 71 08 49 H.q.H...H..H.q.I
8b 46 08 48 8b 4b f8 48-83 e1 03 48 09 c1 48 89 .F.H.K.H...H..H.
4b f8 48 89 10 4c 89 73-f0 49 89 56 08 48 8b 43 K.H..L.s.I.V.H.C
f8 eb 06 48 83 f8 03 77-0c 48 83 e0 03 48 83 c8 ...H...w.H...H..
04 48 89 43 f8 31 c0 5b-41 5e 5d c3 0f 1f 80 00 .H.C.1.[A^].....
00 00 00 55 48 89 e5 53-50 48 89 fb 48 8b 43 08 ...UH..SPH..H.C.
[f6]80 a9 00 00 00 40 74-25 48 8b 80 48 01 00 00 ......@t%H..H... /Applications/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
0x1058d4000 - 0x105b0afff +org.python.python (3.8.8, [c] 2001-2019 Python Software Foundation. - 3.8.8) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/Python
0x105c67000 - 0x105c69fff +_heapq.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_heapq.cpython-38-darwin.so
0x105c71000 - 0x105c76fff +zlib.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/zlib.cpython-38-darwin.so
0x105c80000 - 0x105c82fff +_bz2.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bz2.cpython-38-darwin.so
0x105c8b000 - 0x105cbcfff +_lzma.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_lzma.cpython-38-darwin.so
0x105ccb000 - 0x105cccfff +grp.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/grp.cpython-38-darwin.so
0x105cd4000 - 0x105cdcfff +math.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/math.cpython-38-darwin.so
0x105ce8000 - 0x105ce9fff +_bisect.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_bisect.cpython-38-darwin.so
0x105cf1000 - 0x105cf5fff +_sha512.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha512.cpython-38-darwin.so
0x105cfe000 - 0x105cfffff +_random.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_random.cpython-38-darwin.so
0x105d08000 - 0x105d0dfff +_json.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_json.cpython-38-darwin.so
0x105d17000 - 0x105d2bfff +_ssl.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_ssl.cpython-38-darwin.so
0x105d44000 - 0x105d9cfff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libssl.1.1.dylib
0x105dcb000 - 0x105fe1fff +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/libcrypto.1.1.dylib
0x10607f000 - 0x10608cfff +_socket.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_socket.cpython-38-darwin.so
0x106099000 - 0x10609cfff +select.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/select.cpython-38-darwin.so
0x1060a6000 - 0x1060abfff +_struct.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_struct.cpython-38-darwin.so
0x1060b8000 - 0x1060bcfff +binascii.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/binascii.cpython-38-darwin.so
0x1060c5000 - 0x1060c8fff +_hashlib.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_hashlib.cpython-38-darwin.so
0x1060d2000 - 0x1060d8fff +_blake2.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_blake2.cpython-38-darwin.so
0x1060e2000 - 0x1060f2fff +_sha3.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_sha3.cpython-38-darwin.so
0x1060fc000 - 0x10610bfff +_datetime.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_datetime.cpython-38-darwin.so
0x10611c000 - 0x10611cfff +_scproxy.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_scproxy.cpython-38-darwin.so
0x106124000 - 0x10616dfff +_decimal.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_decimal.cpython-38-darwin.so
0x10618c000 - 0x1061b5fff +pyexpat.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/pyexpat.cpython-38-darwin.so
0x1061ce000 - 0x1061cffff +_queue.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_queue.cpython-38-darwin.so
0x1061d8000 - 0x1061eefff +_pickle.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_pickle.cpython-38-darwin.so
0x1061fe000 - 0x106202fff +_csv.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_csv.cpython-38-darwin.so
0x10620c000 - 0x10620dfff +_posixsubprocess.cpython-38-darwin.so (0) /Applications/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/lib-dynload/_posixsubprocess.cpython-38-darwin.so
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0x7fff3c943000 - 0x7fff3c946fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3ca3f000 - 0x7fff3ca3ffff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cbf9000 - 0x7fff3cc18fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3cd65000 - 0x7fff3cdbbfff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3cdbc000 - 0x7fff3cdd9fff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3cdda000 - 0x7fff3cdddfff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d1f5000 - 0x7fff3d1fbfff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d36c000 - 0x7fff3d383fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d536000 - 0x7fff3d541fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d556000 - 0x7fff3d568fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d569000 - 0x7fff3d56cfff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d585000 - 0x7fff3d6f4fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d6f5000 - 0x7fff3d950fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d951000 - 0x7fff3da67fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3da68000 - 0x7fff3da79fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e09c000 - 0x7fff3e0fefff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e0ff000 - 0x7fff3e124fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e303000 - 0x7fff3e36ffff com.apple.Safari.Core (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e370000 - 0x7fff3e4d2fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e4d3000 - 0x7fff3e7b4fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e7e0000 - 0x7fff3e90cfff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e90d000 - 0x7fff3edadfff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3edae000 - 0x7fff3ee96fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3fbdd000 - 0x7fff3fc5afff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40df5000 - 0x7fff40df8fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff4121d000 - 0x7fff4123bfff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff43749000 - 0x7fff437a8fff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff437a9000 - 0x7fff437c2fff com.apple.SafariFoundation (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff437c3000 - 0x7fff437c9fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff437ca000 - 0x7fff43a3dfff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff442a6000 - 0x7fff442aafff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45c21000 - 0x7fff45c24fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff46310000 - 0x7fff4631bfff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47946000 - 0x7fff47986fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff481d4000 - 0x7fff481effff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff515bc000 - 0x7fff515e9fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff515ea000 - 0x7fff51604fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51605000 - 0x7fff516a4fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51894000 - 0x7fff51897fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53f2c000 - 0x7fff53f62fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55559000 - 0x7fff5555cfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff61d07000 - 0x7fff61d7efff com.apple.driver.AppleIntelHD5000GraphicsMTLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsMTLDriver
0x7fff65c0e000 - 0x7fff66121fff com.apple.driver.AppleIntelHD5000GraphicsGLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelHD5000GraphicsGLDriver.bundle/Contents/MacOS/AppleIntelHD5000GraphicsGLDriver
0x7fff69655000 - 0x7fff69659fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6baa0000 - 0x7fff6baa6fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6baa7000 - 0x7fff6baabfff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6baac000 - 0x7fff6babbfff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6babc000 - 0x7fff6babefff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6babf000 - 0x7fff6bac7fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bac8000 - 0x7fff6bafbfff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bafc000 - 0x7fff6bb38fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bb39000 - 0x7fff6bcccfff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bccd000 - 0x7fff6bcd7fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bcd8000 - 0x7fff6be55fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6be56000 - 0x7fff6be7efff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d117000 - 0x7fff6d16ffff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e219000 - 0x7fff6e220fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e221000 - 0x7fff6e308fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f88a000 - 0x7fff6f89cfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73b9a000 - 0x7fff73ba5fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73dbb000 - 0x7fff73dd3fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff7794b000 - 0x7fff77952fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=1.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.9G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 2880K 6
CG image 360K 40
CoreAnimation 560K 70
CoreGraphics 12K 2
CoreUI image data 5088K 42
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 1.2G 2134
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
MALLOC_REALLOC (reserved) 4K 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 384K 5
STACK GUARD 84K 21
Stack 146.7M 22
Stack Guard 56.0M 1
VM_ALLOCATE 217.6M 252
__DATA 31.0M 612
__DATA_CONST 23.4M 283
__DATA_DIRTY 1291K 185
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 592.0M 149
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 571.6M 588
__UNICODE 588K 1
mapped file 733.9M 107
shared memory 2972K 25
=========== ======= =======
TOTAL 4.0G 4571
TOTAL, minus reserved VM space 3.6G 4571
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.2
OpenGL renderer: Intel Iris OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro11,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.6 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 431.140.6.0.0
SMC Version (system): 2.16f68
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 3:20
Graphics/Displays:
Intel Iris:
Chipset Model: Intel Iris
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0a2e
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-Clipper: 0.16.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.2.2
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Another garbage collection crash in coulombic. That seems to be a particularly good way to cause this crash. Maybe the corruption happens when running coulombic. Or possibly it happens earlier and coulombic just results in lots of garbage collection.