![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
May 2, 2024:
- 6:43 PM Ticket #15100 (diffplot: Cluster atomic models by projecting atom positions with UMAP) created by
- Klim Verba, Katrina Black and Tom Goddard discussed on April 9, 2024 …
- 5:46 PM Ticket #15022 (Blast protein should align loaded structures even when raw query ...) closed by
- fixed
- 5:02 PM Ticket #15099 (Color a surface using volume data at a range of offsets) closed by
- fixed: Done. In ChimeraX daily builds dated May 2, 2024 or later. I've …
- 5:00 PM Ticket #15099 (Color a surface using volume data at a range of offsets) created by
- Shawn Zheng asked about coloring a membrane surface from a tomogram …
- 4:27 PM Ticket #15097 (Surface created by surface smooth command not saved in sessions) closed by
- fixed: Fixed. Command surface smooth created new surfaces but did not set …
- 4:23 PM Ticket #15098 (Saving a session while a BLAST job is in progress crashes ChimeraX) created by
- 4:13 PM Ticket #15097 (Surface created by surface smooth command not saved in sessions) created by
- […]
- 3:57 PM Ticket #15096 (Crash in garbage collection) created by
- […]
- 3:31 PM Ticket #15088 (Qt path override + missing Medical Image dependency) closed by
- limitation: The path override messages can only be fixed by a newer version of Qt.
- 3:22 PM Ticket #15082 (openmm.OpenMMException: There is no registered Platform called "OpenCL") closed by
- not a bug: Taking out the ChimeraX code that sets OPENMM_PLUGIN_DIR environment …
- 3:19 PM Ticket #15095 (Crash in garbage collection) closed by
- duplicate: Hi Rainer, Thanks for reporting this problem. It is fixed in the …
- 3:16 PM Ticket #15094 (Crash in garbage collection) closed by
- duplicate
- 2:22 PM Ticket #15091 (glDrawBuffer: invalid operation) closed by
- can't reproduce: I think Linux might drop the OpenGL context, maybe when the machine …
- 1:48 PM Ticket #15095 (Crash in garbage collection) created by
- […]
- 11:44 AM Ticket #15094 (Crash in garbage collection) created by
- […]
- 11:11 AM Ticket #15093 (Copick: crash in QCoPickTableModel) created by
- […]
- 10:58 AM Ticket #15085 (AlphaFold Prediction Requires Newer ChimeraX) closed by
- not a bug: Not sure what bug you are reporting. If it is that AlphaFold is not …
- 10:41 AM Ticket #15089 (Crash in garbage collection) closed by
- duplicate
- 10:36 AM Ticket #15087 (pydantic dependency not installed (on upgrade?)) closed by
- duplicate
- 9:37 AM Ticket #15092 (ArtiaX: smbprotocol: TimeoutError) created by
- […]
- 9:33 AM Ticket #15091 (glDrawBuffer: invalid operation) created by
- […]
- 9:28 AM Ticket #15084 (ArtiaX: SurfaceCollectionModel: masked_bounds: arrays used as indices ...) closed by
- duplicate
- 9:17 AM Ticket #15081 (MemoryError opening mmCIF files) closed by
- duplicate
- 8:55 AM Ticket #15090 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 8:18 AM Ticket #15089 (Crash in garbage collection) created by
- […]
- 6:24 AM Ticket #15088 (Qt path override + missing Medical Image dependency) created by
- […]
- 12:54 AM Ticket #15087 (pydantic dependency not installed (on upgrade?)) created by
- […]
- 12:53 AM Ticket #15086 (pydantic dependency not installed (on upgrade?)) created by
- […]
May 1, 2024:
- 5:05 PM Ticket #15058 (Errors upgrading/installing ChimeraX) closed by
- worksforme: Tt looks like the /usr/bin/chimerax-daily symbolic link was removed by …
- 4:27 PM Ticket #14976 (Make blastprotein command load structures and alignment without GUI) reopened by
- wording (as per comment 27) still not changed as of UCSF ChimeraX …
- 4:23 PM Ticket #15022 (Blast protein should align loaded structures even when raw query ...) reopened by
- Please reopen tickets when there are new concerns.
- 4:05 PM Ticket #15085 (AlphaFold Prediction Requires Newer ChimeraX) created by
- […]
- 2:02 PM Ticket #15084 (ArtiaX: SurfaceCollectionModel: masked_bounds: arrays used as indices ...) created by
- […]
- 2:02 PM Ticket #15083 (ArtiaX: SurfaceCollectionModel: masked_bounds: arrays used as indices ...) created by
- […]
- 1:00 PM Ticket #15082 (openmm.OpenMMException: There is no registered Platform called "OpenCL") created by
- […]
- 12:06 PM Ticket #15081 (MemoryError opening mmCIF files) created by
- […]
- 11:33 AM Ticket #15074 (perframe/coordset: commands executed with old coordset) closed by
- not a bug: We discussed two ways to play through the trajectory showing hydrogen …
- 10:52 AM Ticket #15080 (Better handling of multi-character chain IDs for Modeller) created by
- There is something seriously weird about this structure, and I can …
- 8:38 AM Ticket #15078 (Crash handling text input) closed by
- can't reproduce
- 1:45 AM Ticket #15079 (OpenMM on PyPi) created by
- […]
Apr 30, 2024:
- 8:27 PM Ticket #15078 (Crash handling text input) created by
- […]
- 8:02 PM Training edited by
- (diff)
- 8:02 PM Training edited by
- (diff)
- 1:59 PM Ticket #15077 (ArtiaX: move_children: boolean index did not match indexed array along ...) created by
- […]
- 1:32 PM Ticket #15076 (ArtiaX: delete_selected_particles: arrays used as indices must be of ...) created by
- […]
- 12:20 PM 2024-5-2 edited by
- (diff)
- 11:42 AM Ticket #15075 (Copick: QCoPickTableModel: child item has no parent) created by
- […]
- 11:13 AM Dev2024-5-6 created by
- 11:12 AM Dev2024-4-29 edited by
- (diff)
- 11:12 AM 2024-5-2 created by
- 11:10 AM DeveloperMeetings edited by
- (diff)
- 10:43 AM Ticket #15074 (perframe/coordset: commands executed with old coordset) created by
- I'm trying to visualize the hydrogen bonds of a small molecule in …
- 9:22 AM Ticket #15073 (Crash in QItemSelectionModel::isSelected) closed by
- can't reproduce
- 9:19 AM Ticket #15073 (Crash in QItemSelectionModel::isSelected) created by
- […]
- 9:08 AM Ticket #15071 (Message going to dead viewer's status) closed by
- can't reproduce
- 9:02 AM Ticket #15070 (Crash in garbage collection) closed by
- duplicate: Hi Haaris, Thanks for reporting this problem. It is fixed in the …
- 8:55 AM Ticket #15069 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 7:15 AM Ticket #15072 (Crash setting active window) created by
- […]
- 6:44 AM Ticket #15071 (Message going to dead viewer's status) created by
- […]
- 3:19 AM Ticket #15070 (Crash in garbage collection) created by
- […]
Apr 29, 2024:
- 11:41 PM Ticket #15069 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:11 PM Ticket #15054 (Can't save session because NewerVersionQuery not listed) closed by
- fixed: And the ChimeraX that has this problem is a daily build from 27 …
- 12:05 PM Ticket #15041 (Session save failed: Check Water Viewer, Residue already deleted) closed by
- duplicate
- 12:00 PM Ticket #15055 (AlphaFold Prediction Requires Newer ChimeraX) closed by
- fixed: already fixed for daily build
- 11:44 AM Ticket #15067 (QKeyEvent in drag/drop code) closed by
- duplicate: Duplicate of #14793
- 11:40 AM Ticket #15066 (Crash in garbage collection) closed by
- duplicate
- 11:38 AM Ticket #15065 (Crash as menu teardown makes previous window key) closed by
- can't reproduce
- 11:32 AM Ticket #15063 (Crash in event loop) closed by
- can't reproduce
- 11:31 AM Ticket #15062 (Crash in event loop) closed by
- can't reproduce
- 11:28 AM Ticket #15061 (Crash in garbage collection) closed by
- duplicate
- 11:25 AM Ticket #15059 (Crash in garbage collection) closed by
- duplicate
- 11:23 AM Ticket #15068 (ArtiaX: 'MarkerSetPlus' object has no attribute 'session') created by
- […]
- 11:21 AM Ticket #15057 (Crash in garbage collection) closed by
- can't reproduce: We've still got some crashes in garbage collection, just not as many.
- 11:19 AM Ticket #15056 (Crash configuring display) closed by
- can't reproduce
- 11:10 AM Ticket #15052 (Crash in python_instances_of_class) closed by
- duplicate: Hi George, Thanks for reporting this problem. It was fixed in a …
- 11:06 AM Ticket #15051 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate
- 11:03 AM Ticket #15050 (Add Charge: loop that checks for isolated atoms within residues: list ...) closed by
- fixed: Hi Mitch, Thanks for reporting this problem. I have committed a fix …
- 10:42 AM Ticket #15049 (Crash changing screen/display settings, possibly while in full screen mode) closed by
- can't reproduce
- 10:37 AM Ticket #15047 (Crash in garbage collection) closed by
- duplicate
- 10:35 AM Ticket #15046 (Crash in garbage collection) closed by
- duplicate
- 9:12 AM Ticket #15067 (QKeyEvent in drag/drop code) created by
- […]
- 6:45 AM Ticket #15066 (Crash in garbage collection) created by
- […]
- 5:42 AM Ticket #15065 (Crash as menu teardown makes previous window key) created by
- […]
- 3:15 AM Ticket #15064 (Mouse wheel: no Qt.KeyboardModifier.CtrlModifier) created by
- […]
- 2:59 AM Ticket #15063 (Crash in event loop) created by
- […]
- 2:45 AM Ticket #15062 (Crash in event loop) created by
- […]
- 1:14 AM Ticket #15061 (Crash in garbage collection) created by
- […]
Apr 28, 2024:
- 6:11 PM Ticket #15060 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:26 PM Ticket #15059 (Crash in garbage collection) created by
- […]
- 9:16 AM Ticket #15058 (Errors upgrading/installing ChimeraX) created by
- […] problem_installing_daily_20.04.out
- 8:38 AM Ticket #15057 (Crash in garbage collection) created by
- […]
- 4:33 AM Ticket #15056 (Crash configuring display) created by
- […]
- 3:42 AM Ticket #15055 (AlphaFold Prediction Requires Newer ChimeraX) created by
- […]
Apr 27, 2024:
- 6:43 PM Ticket #15054 (Can't save session because NewerVersionQuery not listed) created by
- […]
- 11:19 AM Ticket #15053 (Segmentation cursors don't open if seg tool opened after view layout ...) created by
- 11:17 AM Ticket #9850 (Issues when Segmentations tool is already open w/o data when new DICOM ...) closed by
- fixed: Was fixed by …
- 8:28 AM Ticket #15052 (Crash in python_instances_of_class) created by
- […]
- 8:17 AM Ticket #15051 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
Apr 26, 2024:
- 8:33 PM Ticket #15050 (Add Charge: loop that checks for isolated atoms within residues: list ...) created by
- […] mincell.20nm-2.pdb
- 5:10 PM Ticket #15049 (Crash changing screen/display settings, possibly while in full screen mode) created by
- […]
- 4:04 PM Ticket #15048 (Bundle builder produces incorrect metadata if "category" is not a list) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/84a01dd48d7e88f93a44bba54e0962 …
- 3:48 PM Ticket #15048 (Bundle builder produces incorrect metadata if "category" is not a list) created by
- [chimerax] category = "General" and [chimerax] categories = …
- 2:59 PM Ticket #9267 (make build-from-scratch fails on Linux) closed by
- fixed: Good point.
- 2:26 PM Ticket #10424 (KeyError in tasks after opening then closing session with BLAST failure) closed by
- fixed: It is …
- 2:25 PM Ticket #14510 (KeyError restoring tasks) closed by
- fixed: It is …
- 2:25 PM Ticket #14404 (Session restore, tasks: KeyError) closed by
- fixed: It is …
- 2:25 PM Ticket #10391 (Session restore: KeyError deleting tasks) closed by
- fixed: It is …
- 1:31 PM Ticket #15022 (Blast protein should align loaded structures even when raw query ...) closed by
- fixed
- 1:27 PM Ticket #15047 (Crash in garbage collection) created by
- […]
- 1:22 PM Ticket #15046 (Crash in garbage collection) created by
- […]
- 12:44 PM Ticket #14733 (Session restore: blast protein: KeyError: '_protein_chain') closed by
- can't reproduce: Most likely. Can't reproduce without the session.
- 12:43 PM Ticket #15029 (value error traceback when checking "List only best chain per hit" ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/973f037a2349527d06167b1cee825b …
- 12:30 PM Ticket #15045 (Crash showing Save File dialog) closed by
- can't reproduce
- 12:25 PM Ticket #15044 (Crash in event loop in NSMenuBarTrackingSession, terminated by SIGKILL) closed by
- can't reproduce
- 12:21 PM Ticket #15043 (Crashed in garbage collection) closed by
- duplicate
- 12:06 PM Ticket #15045 (Crash showing Save File dialog) created by
- […]
- 12:04 PM Ticket #15040 (Crash showing rapid access in QStackedWidget_setCurrentWidget() while ...) closed by
- can't reproduce
- 11:58 AM Ticket #15039 (Crash in garbage collection) closed by
- duplicate
- 11:56 AM Ticket #15038 (Crash in garbage collection) closed by
- duplicate
- 11:55 AM Ticket #15037 (Garbage collection crash) closed by
- duplicate
- 11:53 AM Ticket #15036 (Opening session: RuntimeError: LZ4F_decompress failed) closed by
- limitation
- 8:18 AM Ticket #15044 (Crash in event loop in NSMenuBarTrackingSession, terminated by SIGKILL) created by
- […]
- 8:16 AM Ticket #15043 (Crashed in garbage collection) created by
- […]
- 5:36 AM Ticket #15042 (ArtiaX importing Copick tool: ModuleNotFoundError: No module named ...) created by
- […]
- 3:16 AM Ticket #15041 (Session save failed: Check Water Viewer, Residue already deleted) created by
- […]
- 2:05 AM Ticket #15040 (Crash showing rapid access in QStackedWidget_setCurrentWidget() while ...) created by
- […]
Apr 25, 2024:
- 10:05 PM Ticket #15039 (Crash in garbage collection) created by
- […]
- 9:57 PM Ticket #15038 (Crash in garbage collection) created by
- […]
- 9:40 PM Ticket #15037 (Garbage collection crash) created by
- […]
- 8:02 PM 2024-4-25 edited by
- (diff)
- 7:24 PM Ticket #15036 (Opening session: RuntimeError: LZ4F_decompress failed) created by
- […]
- 6:29 PM Ticket #15035 (Revert Greek/special characters to plain text on output) created by
- I just downloaded a pdb file from AlphaFold DB …
- 6:03 PM Ticket #15033 (Crash in garbage collection) closed by
- duplicate: Hi Mitch, Thanks for reporting this problem. It is fixed in the …
- 6:02 PM Ticket #15031 (Crash in garbage collection) closed by
- duplicate: Hi Daniel, Thanks for reporting this problem. It is fixed in the …
- 5:49 PM Ticket #15001 (Links to example files in Toolshed Building and Distributing bundles ...) closed by
- fixed: Re-enabled zip download while retaining references to GitHub sample code.
- 5:08 PM 2024-4-25 edited by
- (diff)
- 3:37 PM Ticket #15030 (Dock Prep ChargeError) closed by
- duplicate
- 3:27 PM Ticket #15034 (Better user-facing message when sessions require newer internal bundles) created by
- When a session needs a newer version of an internal bundle, like …
- 3:25 PM Ticket #15033 (Crash in garbage collection) created by
- […]
- 3:22 PM Ticket #15027 (Update atomic bundle) closed by
- not a bug: Hi Nishant, The Atomic bundle is shipped as part of the ChimeraX app, …
- 2:25 PM Ticket #15032 (VR user interface suggestions) created by
- From: Scooter Morris Subject: VR comments Date: April 24, 2024 at …
- 2:22 PM Ticket #15026 (Graphics crash, macOS 14.4.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:10 PM NIAID2024 edited by
- (diff)
- 2:08 PM NIAID2024 edited by
- (diff)
- 2:04 PM NIAID2024 edited by
- (diff)
- 2:00 PM Ticket #15031 (Crash in garbage collection) created by
- […]
- 11:45 AM Ticket #15030 (Dock Prep ChargeError) created by
- […]
- 10:44 AM Ticket #15029 (value error traceback when checking "List only best chain per hit" ...) created by
- […]
Apr 24, 2024:
- 6:50 PM Ticket #15028 (Session save failed: Can't convert object of type: <enum 'Matrix'>) closed by
- limitation: Sessions support IntEnum.
- 6:27 PM Ticket #15028 (Session save failed: Can't convert object of type: <enum 'Matrix'>) created by
- […]
- 5:04 PM Ticket #15027 (Update atomic bundle) created by
- […]
- 3:31 PM Ticket #15025 (ChimeraX bug report submission) closed by
- fixed: I've added a check for sequence only results. A summary will be …
- 3:23 PM Ticket #15026 (Graphics crash, macOS 14.4.1, Intel Iris Plus Graphics) created by
- […]
- 2:45 PM Ticket #15025 (ChimeraX bug report submission) created by
- […]
- 2:35 PM Ticket #15023 (Crash in garbage collection) closed by
- duplicate
- 2:33 PM Ticket #15024 (Realsense: Couldn't resolve requests) created by
- […] error1.PNG
- 1:27 PM Ticket #15023 (Crash in garbage collection) created by
- […]
- 11:53 AM Ticket #15022 (Blast protein should align loaded structures even when raw query ...) created by
- […]
- 11:46 AM Ticket #10127 (DICOM session does not restore thresholds or colors) closed by
- fixed: This commit …
- 11:38 AM Ticket #15021 (Spec given to 'hbonds' selects nothing) closed by
- nonchimerax: Well, because it seems that the ligand "residue" is two residues when …
- 11:29 AM Ticket #14917 (Angle tool allows decimal places to go to -1) closed by
- fixed: Fix available in next daily build. (fix: …
- 11:26 AM Ticket #15020 (Level popup persists after PlaneViewer closes) closed by
- fixed: Closed by …
- 11:24 AM Ticket #15018 (Showing molecular surface: Unable to allocate 4.41 MiB for an array) closed by
- limitation: User opened an mmCIF file of a virus with 780 chains then tried to …
- 11:22 AM Ticket #15021 (Spec given to 'hbonds' selects nothing) created by
- […]
- 11:19 AM Ticket #15016 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Possible OpenGL graphics driver bug. But I suspect there is something …
- 10:51 AM Ticket #10389 (wrapped C/C++ object of type DICOMTable has been deleted) closed by
- fixed: Should have been fixed by …
- 10:31 AM Ticket #15020 (Level popup persists after PlaneViewer closes) created by
- While fixing #14618 I discovered that if I timed it just right then …
- 10:27 AM Ticket #14618 (Cancel mouse movement callback if viewers closed) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/2243441636ccc44cd3454c32544681 …
- 9:10 AM Ticket #15019 (Match structure to itself: list index out of range) closed by
- duplicate
- 8:58 AM Ticket #15015 (Crash in garbage collection) closed by
- can't reproduce: This is after the fix I made, so there still is a less-frequent …
- 8:51 AM Ticket #15014 (Crash in garbage collection) closed by
- duplicate
- 8:50 AM Ticket #15012 (Crash in garbage collection) closed by
- duplicate
- 6:57 AM Ticket #15019 (Match structure to itself: list index out of range) created by
- […]
- 4:44 AM Ticket #15018 (Showing molecular surface: Unable to allocate 4.41 MiB for an array) created by
- […]
- 2:46 AM Ticket #15017 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 1:12 AM Ticket #15016 (glDrawBuffer: invalid operation) created by
- […]
Apr 23, 2024:
- 11:56 PM Ticket #15015 (Crash in garbage collection) created by
- […]
- 10:21 PM Ticket #14976 (Make blastprotein command load structures and alignment without GUI) closed by
- fixed: I've pushed the changes. YMMV, it was fast for an Alphafold version 2 …
- 8:30 PM Ticket #15014 (Crash in garbage collection) created by
- […]
- 7:47 PM Ticket #15013 (Dragging docked tool logs "Already setting window visible!") created by
- […]
- 4:09 PM Ticket #15012 (Crash in garbage collection) created by
- […]
- 3:57 PM Ticket #15004 (ArtiaX dependency not installed) closed by
- limitation: Any version number change should work. ChimeraX uses pip to install …
- 2:03 PM Ticket #15011 (Alt locs in 7b6w not coalesced) created by
- In 7b6w residue T0B, the alternate locations are separate atoms, …
- 1:38 PM Ticket #14993 (No models) closed by
- fixed: Glad you got it working!
- 11:58 AM Ticket #15009 (MD Viewer: self.atomLocation[0]: list index out of range) closed by
- not a bug: Not a multi-model PDB file
- 11:42 AM Ticket #15006 (Crash in event loop) closed by
- can't reproduce
- 11:39 AM Ticket #15005 (Crash in garbage collection) closed by
- duplicate
- 11:04 AM Ticket #15010 (Better assignment of BLAST results to sequences) created by
- From Tom's ticket, #14976: Besides these 3 new options I also want …
- 11:01 AM Dev2024-4-29 created by
- 10:59 AM 2024-4-25 created by
- 10:58 AM DeveloperMeetings edited by
- (diff)
- 10:53 AM Ticket #15009 (MD Viewer: self.atomLocation[0]: list index out of range) created by
- […]
- 9:51 AM Ticket #15008 (Clipper: 'NoneType' object has no attribute 'dim') created by
- […]
- 9:47 AM Ticket #15007 (Clipper: 'NoneType' object has no attribute 'dim') created by
- […]
Apr 22, 2024:
- 9:53 PM Ticket #15006 (Crash in event loop) created by
- […]
- 5:50 PM Ticket #14982 (combine command: ValueError: Illegal chain ID character: 'Α') closed by
- not a bug: This PDB file has unicode Greek capital letter A (0391) instead of …
- 5:03 PM Ticket #15005 (Crash in garbage collection) created by
- […]
- 4:23 PM Dev2024-4-22 edited by
- (diff)
- 4:15 PM Ticket #15004 (ArtiaX dependency not installed) created by
- […]
- 1:52 PM Ticket #14990 (Surface Color tool: list index out of range) closed by
- duplicate: User had colormap on volume surface with more than 8 colors and then …
- 1:38 PM Ticket #14989 (Crash changing volume level) closed by
- nonchimerax: This ChimeraX crashed happened in Apple's OpenGL graphics driver (in …
- 1:37 PM Ticket #15002 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 1:24 PM Ticket #15003 (PICKLUSTER: handle_scheme: KeyError: 'chain1') created by
- […]
- 12:49 PM Ticket #15002 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 12:29 PM Ticket #15000 (Crash saving atomic session state) closed by
- duplicate: Duplicate of #14998
- 12:28 PM Ticket #14999 (Crash saving atomic session state) closed by
- duplicate: More or less a duplicate of #14998
- 12:27 PM Ticket #15001 (Links to example files in Toolshed Building and Distributing bundles ...) created by
- Roden Luo points out that links to example code files are missing in …
- 12:26 PM Ticket #14998 (Crash saving atomic session state) closed by
- can't reproduce: No good indication of the actual cause of the crash
- 12:14 PM Ticket #14997 (ISOLDE: ResidueStepper references dead Structure) closed by
- duplicate: Duplicate of #14631
- 12:01 PM Ticket #14994 (Crash in check_for_changes) closed by
- can't reproduce
- 11:52 AM Ticket #14991 (ISOLDE: crash in _set_global_k) closed by
- can't reproduce: Yeah - that's almost certainly obsolete.
- 11:03 AM Ticket #14988 (Cannot write into Modeller temporary folder) closed by
- nonchimerax: Hi Robert, If you do not specify a specific folder for Modeller to …
- 10:51 AM Ticket #14987 (Crash in garbage collection) closed by
- duplicate
- 10:49 AM Ticket #14986 (Crash in garbage collection) closed by
- duplicate: Hi Whitney, Thanks for reporting this problem. We believe it is fixed …
- 10:46 AM Ticket #14985 (Infinite loop in OpenCommands) closed by
- fixed: I'm guessing the commands that got run opened another file of the same …
- 9:34 AM Ticket #15000 (Crash saving atomic session state) created by
- […]
- 9:31 AM Ticket #14999 (Crash saving atomic session state) created by
- […]
- 9:30 AM Ticket #14998 (Crash saving atomic session state) created by
- […]
- 9:20 AM Ticket #14997 (ISOLDE: ResidueStepper references dead Structure) created by
- […]
- 9:16 AM Ticket #14996 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 1:59 AM Ticket #14995 (ArtiaX: cannot load Dynamo table: could not convert string to float) created by
- […]
Apr 21, 2024:
- 10:56 PM Ticket #14994 (Crash in check_for_changes) created by
- […]
- 10:26 PM Ticket #14993 (No models) created by
- […]
- 9:23 PM Ticket #14992 (Crash in QWindowSystemInterface::handleFileOpenEvent) created by
- […]
- 6:31 PM Ticket #14991 (ISOLDE: crash in _set_global_k) created by
- […]
- 3:32 PM Ticket #14990 (Surface Color tool: list index out of range) created by
- […]
- 12:44 AM Ticket #14989 (Crash changing volume level) created by
- […]
Apr 20, 2024:
- 5:32 PM Ticket #14988 (Cannot write into Modeller temporary folder) created by
- […] TAPV-5F1B Chain A MSA.fasta
- 4:09 PM Ticket #14987 (Crash in garbage collection) created by
- […]
- 10:34 AM Ticket #14986 (Crash in garbage collection) created by
- […]
- 8:07 AM Ticket #14985 (Infinite loop in OpenCommands) created by
- […]
Apr 19, 2024:
- 1:20 PM Ticket #14971 (surface dust not working in a multi-line script) closed by
- fixed: Fixed. The "wait 1" is no longer needed to get volume surfaces to be …
- 10:38 AM Ticket #14963 (Alphafold prediction send sequence to Google Colab returned: None) closed by
- can't reproduce: No reply from reporter.
- 10:37 AM Ticket #14984 (Crash in event loop. Linux. No useful details.) closed by
- can't reproduce
- 10:35 AM Ticket #14983 (Garbage collection crash) closed by
- duplicate
- 10:30 AM Ticket #14981 (Coulombic command: UnboundLocalError: local variable 'cmap' referenced ...) closed by
- fixed: Fixed probably long ago. Report is from ancient ChimeraX 1.1!
- 10:27 AM Ticket #14979 (Graphics crash, macOS 11.7.10, NVIDIA GeForce GT 750M) closed by
- nonchimerax
- 4:48 AM Ticket #14984 (Crash in event loop. Linux. No useful details.) created by
- […]
- 2:06 AM Ticket #14983 (Garbage collection crash) created by
- […]
Apr 18, 2024:
- 8:53 PM Ticket #14982 (combine command: ValueError: Illegal chain ID character: 'Α') created by
- […]
- 8:51 PM Ticket #14981 (Coulombic command: UnboundLocalError: local variable 'cmap' referenced ...) created by
- […]
- 7:29 PM Ticket #14980 (False "BLAST job failed" error on session restore) created by
- […] braf_23.cxs
- 5:52 PM 2024-4-18 edited by
- (diff)
- 5:27 PM Ticket #14979 (Graphics crash, macOS 11.7.10, NVIDIA GeForce GT 750M) created by
- […]
- 3:46 PM Ticket #14973 (Crash in event loop after RCSB fetch failed) closed by
- can't reproduce
- 3:43 PM Ticket #14972 (Crash in garbage collection while DockPrep deleting alt-locs) closed by
- duplicate
- 3:41 PM Ticket #14970 (Crash in QTabBar:paintEvent(). QPainter::begin: Paint device returned ...) closed by
- can't reproduce: Probable Qt bug. Crashed in Qt with more than 80 models open, two …
- 1:40 PM Ticket #14975 (Graphics crash, macOS 14.4, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 1:37 PM Ticket #14974 (Crash splitting molecule) closed by
- can't reproduce
- 1:16 PM Ticket #14978 (ChimeraX bug report submission) closed by
- not a bug
- 12:38 PM Ticket #14978 (ChimeraX bug report submission) created by
- […]
- 12:30 PM Ticket #14977 (Toolshed updates: IndexError: tuple index out of range) created by
- […]
- 12:21 PM Ticket #14976 (Make blastprotein command load structures and alignment without GUI) created by
- I'd like 3 new options to the blastprotein command blastprotein …
- 7:44 AM Ticket #14975 (Graphics crash, macOS 14.4, Intel Iris Plus Graphics 655) created by
- […]
- 7:01 AM Ticket #14974 (Crash splitting molecule) created by
- […] 7jjo.pdb
- 2:49 AM Ticket #14973 (Crash in event loop after RCSB fetch failed) created by
- […]
- 2:45 AM Ticket #14972 (Crash in garbage collection while DockPrep deleting alt-locs) created by
- […]
Apr 17, 2024:
- 11:53 PM Ticket #14971 (surface dust not working in a multi-line script) created by
- […]
- 11:40 PM Ticket #14970 (Crash in QTabBar:paintEvent(). QPainter::begin: Paint device returned ...) created by
- […]
- 3:13 PM Ticket #14968 (Silhouettes artifacts when saving image) closed by
- nonchimerax: Unfortunately only Apple can fix the OpenGL graphics driver and they …
- 1:50 PM Ticket #14969 (Test) closed by
- not a bug
- 1:42 PM Ticket #14969 (Test) created by
- […]
- 1:04 PM Ticket #14967 (Test) closed by
- not a bug
- 11:48 AM Ticket #14968 (Silhouettes artifacts when saving image) created by
- […] [[Image(...)]] smime.p7s
- 11:45 AM Ticket #14967 (Test) created by
- […]
- 10:24 AM Ticket #14962 (Setting background color with RGB sliders not working) closed by
- fixed: Well, "fixed", but because of some systems at UCSF being down the fix …
Apr 16, 2024:
- 11:24 AM Ticket #14966 (Make fitmap search use random placements within the target volume envelope) created by
- Roden Luo the developer of DiffFit points out that choosing the center …
- 11:11 AM Dev2024-4-22 created by
- 11:10 AM 2024-4-11 edited by
- (diff)
- 11:09 AM 2024-4-18 created by
- 11:07 AM DeveloperMeetings edited by
- (diff)
- 8:06 AM Ticket #7936 (ResidueStepper refers to dead Structure) closed by
- fixed: Sorry for the ridiculously long wait, but this will be fixed in the …
- 8:05 AM Ticket #8772 (isolde residue stepper referencing dead structure) closed by
- fixed: See #14894.
- 8:04 AM Ticket #8877 (ResidueStepper referencing dead structure) closed by
- fixed: Sorry it's taken such a long time, but this is now fixed. See #14894 …
- 8:03 AM Ticket #9523 (ISOLDE ResidueStepper holding reference to dead structure) closed by
- fixed: Sorry it's taken such a ridiculously long time, but this will be fixed …
- 8:03 AM Ticket #14538 (ISOLDE: ResidueStepper: self.positions is None) closed by
- fixed: See #14894.
- 8:02 AM Ticket #14599 (ISOLDE session save: ResidueStepper referenced closed AtomicStructure) closed by
- fixed: See #14894.
- 8:01 AM Ticket #14631 (ISOLDE: ResidueStepper references dead Structure) closed by
- fixed: Fixed (finally!). See #14894.
- 8:00 AM Ticket #14828 (ISOLDE: ResidueStepper holding reference to closed structure) closed by
- fixed: See #14894.
- 7:49 AM Ticket #14894 (ISOLDE: ResidueStepper holding reference to closed structure) closed by
- fixed: A neat solution, and works beautifully. After …
Apr 15, 2024:
- 4:02 PM Dev2024-4-15 edited by
- (diff)
- 3:27 PM Ticket #14661 (PDB-REDO: Unknown polymer entity) closed by
- fixed: Fixed in daily release.
- 2:20 PM Ticket #14965 (Windowsize typo crashes ChimeraX.) closed by
- limitation: Thanks for reporting the problem. I tried "windowsize 850850" on Mac …
- 12:14 PM ChangeLog edited by
- (diff)
Apr 12, 2024:
- 6:09 PM Ticket #14965 (Windowsize typo crashes ChimeraX.) created by
- […]
- 3:54 PM Ticket #14914 (Allow Quest passthrough video for PC VR) closed by
- fixed: Implemented passthrough. Uses new xr command option passthrough with …
- 12:20 PM Ticket #14933 (ChimeraX GLTF embedded in PowerPoint has bad lighting) closed by
- nonchimerax
- 11:52 AM Ticket #14964 (Update RealSense toolshed bundle for use with Python 3.11) closed by
- fixed: Added RealSense bundle to Toolshed compatible with current ChimeraX …
- 11:51 AM Ticket #14964 (Update RealSense toolshed bundle for use with Python 3.11) created by
- Subject: [chimerax-users] Download issue for Realsense plugin Date: …
- 8:13 AM Ticket #14963 (Alphafold prediction send sequence to Google Colab returned: None) created by
- Hi, I am trying to do structure predictions using AlphaFold in …
- 7:49 AM Ticket #14962 (Setting background color with RGB sliders not working) created by
- […] Screenshot 2024-04-12 at 16.42.09.png …
Apr 11, 2024:
- 4:37 PM Ticket #14841 (Qt6WebEngineCore) closed by
- fixed
- 4:33 PM 2024-4-11 edited by
- (diff)
- 3:26 PM 2024-4-11 edited by
- (diff)
- 3:26 PM 2024-4-11 edited by
- (diff)
- 2:54 PM Ticket #14959 (AlphaFold Prediction Requires Newer ChimeraX) closed by
- not a bug: You can either delete your previous ChimeraX or rename it when you …
- 2:25 PM Ticket #14961 (Angle tool allows decimal places to go to -1) closed by
- duplicate: Hi Jason, Thanks for reporting this problem. It was reported a few …
- 2:23 PM Ticket #14960 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Dmitrii, Thanks for reporting this problem. This is a bug …
- 2:03 PM NIAID2024 edited by
- (diff)
- 2:01 PM NIAID2024 edited by
- (diff)
- 1:23 PM Ticket #14961 (Angle tool allows decimal places to go to -1) created by
- […]
- 12:57 PM Ticket #14960 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 12:11 PM Ticket #14959 (AlphaFold Prediction Requires Newer ChimeraX) created by
- […]
- 12:02 PM Ticket #14956 (Crash in swap_buffers) closed by
- can't reproduce: Possible graphics driver bug, Mesa 22.3.5, RTX 4090 GPU.
- 10:28 AM Ticket #14958 (Crash in garbage collection) closed by
- duplicate
- 10:26 AM Ticket #14957 (Crash in python_instances_of_class) closed by
- duplicate
- 10:23 AM Ticket #14955 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 10:22 AM Ticket #14954 (Crash in garbage collection) closed by
- duplicate
- 10:12 AM Ticket #14958 (Crash in garbage collection) created by
- […]
- 10:00 AM Ticket #14953 (Crash in garbage collection) closed by
- duplicate
- 9:59 AM Ticket #14952 (Crash in garbage collection) closed by
- duplicate: Hi Mark, Thanks for reporting this problem. We believe it is fixed in …
- 9:55 AM Ticket #14951 (Crash in garbage collection) closed by
- can't reproduce: So there must be another garbage-collection-related bug, since this is …
- 9:36 AM Ticket #14957 (Crash in python_instances_of_class) created by
- […]
- 6:01 AM Ticket #14956 (Crash in swap_buffers) created by
- […]
- 2:17 AM Ticket #14955 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
Apr 10, 2024:
- 11:41 PM Ticket #14954 (Crash in garbage collection) created by
- […]
- 11:34 PM Ticket #14953 (Crash in garbage collection) created by
- […]
- 11:00 PM Ticket #14952 (Crash in garbage collection) created by
- […]
- 3:15 PM Ticket #14951 (Crash in garbage collection) created by
- […]
- 3:02 PM Ticket #14950 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 3:00 PM Ticket #14949 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 11:54 AM Ticket #14950 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 11:30 AM Ticket #14949 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:19 AM Ticket #14942 (MOE docking results) closed by
- fixed: Okay, tomorrow's build will support the MOE files you supplied in …
- 11:12 AM phenix-4-11-24 edited by
- (diff)
- 10:37 AM Ticket #14947 (Crash changing display configuration, Mac, AMD and Intel graphics, 2 ...) closed by
- nonchimerax: Probable Qt bug, 2 displays on Mac, AMD graphics.
- 10:00 AM Ticket #14948 (available.categories is empty) created by
- […]
- 9:14 AM Ticket #14945 (Crash in Chromium backend) closed by
- can't reproduce
- 7:53 AM Ticket #14947 (Crash changing display configuration, Mac, AMD and Intel graphics, 2 ...) created by
- […]
- 3:29 AM Ticket #14946 (ISOLDE: 'NoneType' object has no attribute 'triggers') created by
- […]
- 12:53 AM Ticket #14945 (Crash in Chromium backend) created by
- […]
Apr 9, 2024:
- 5:43 PM Ticket #14943 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 5:32 PM Ticket #14944 (Crash processing mouse event) closed by
- can't reproduce
- 5:08 PM phenix-4-11-24 edited by
- (diff)
- 2:07 PM phenix-4-11-24 edited by
- (diff)
- 1:45 PM Ticket #14944 (Crash processing mouse event) created by
- […]
- 1:21 PM phenix-4-11-24 edited by
- (diff)
- 1:19 PM phenix-4-11-24 edited by
- (diff)
- 11:52 AM phenix-4-11-24 created by
- 11:52 AM Features edited by
- (diff)
- 11:36 AM Ticket #14880 (defattr Attribute File recipient value molecules or structures) closed by
- fixed: Actually, the *code* already supports all the features I outlined, as …
- 10:49 AM Ticket #14941 (chimeraX silhouette look spotty) closed by
- nonchimerax: Unfortunately this is a known problem with one specific old Intel …
- 10:43 AM Ticket #14940 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:39 AM Ticket #14943 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by
- […]
- 10:39 AM Ticket #14942 (MOE docking results) created by
- Hi Eric, Thanks. I have attached a mol2 format file saved from moe …
- 10:27 AM Dev2024-4-15 created by
- 10:26 AM DeveloperMeetings edited by
- (diff)
- 10:25 AM 2024-4-4 edited by
- (diff)
- 10:22 AM 2024-4-11 created by
- 10:21 AM DeveloperMeetings edited by
- (diff)
- 9:30 AM Ticket #14941 (chimeraX silhouette look spotty) created by
- […] Screenshot.png
- 9:08 AM Ticket #14939 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:06 AM Ticket #14940 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by
- […]
- 9:03 AM Ticket #14938 (MemoryError opening mmCIF files) closed by
- duplicate
- 5:34 AM Ticket #14939 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:09 AM Ticket #14938 (MemoryError opening mmCIF files) created by
- […]
Apr 8, 2024:
- 5:41 PM Ticket #14930 (Problem reading .dx map: could not convert string to float: b'attribute') closed by
- can't reproduce: ChimeraX only handles 3d maps in OpenDX format (.dx). The file the …
- 5:13 PM Ticket #14935 (cpuinfo launches new ChimeraX) closed by
- fixed: Fixed. The PyTables version 3.9.2 in its leaf.py runs when it is …
- 5:01 PM Ticket #14926 (EMAN2 HDF5 file: cannot import name '_broken_hdf5_long_double' from ...) closed by
- fixed
- 4:44 PM Ticket #14937 (Crash in python_instances_of_class) closed by
- duplicate
- 4:43 PM Ticket #14936 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') closed by
- duplicate
- 4:41 PM Ticket #14932 (OpenGL error) closed by
- wontfix
- 4:18 PM Dev2024-4-8 edited by
- (diff)
- 3:06 PM Dev2024-4-8 created by
- 3:04 PM DeveloperMeetings edited by
- (diff)
- 2:41 PM Ticket #14937 (Crash in python_instances_of_class) created by
- […]
- 2:34 PM Ticket #14936 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by
- […]
- 2:14 PM Ticket #14935 (cpuinfo launches new ChimeraX) created by
- […]
- 1:24 PM Ticket #14934 (Daily build "developer cannot be verified") created by
- […]
- 1:13 PM Ticket #14927 (Graphics driver crash) closed by
- can't reproduce
- 12:49 PM Ticket #14933 (ChimeraX GLTF embedded in PowerPoint has bad lighting) created by
- From the March 28, 2024 NIAID ChimeraX meeting: Phil: ChimeraX gltf …
- 12:34 PM Ticket #14929 (Crash in garbage collection) closed by
- duplicate
- 12:26 PM Ticket #14932 (OpenGL error) created by
- […]
- 12:18 PM Ticket #14925 (Crash in garbage collection) closed by
- duplicate: Hi Abhi, Thanks for reporting this problem. We believe it is fixed in …
- 12:15 PM Ticket #14924 (Crash in python_instances_of_class) closed by
- duplicate
- 12:14 PM Ticket #14923 (Crash in garbage collection) closed by
- duplicate
- 12:13 PM Ticket #14922 (Crash in python_instances_of_class) closed by
- duplicate
- 12:11 PM Ticket #14921 (Crash in python_instances_of_class) closed by
- duplicate
- 12:10 PM Ticket #14920 (Crash in garbage collection) closed by
- duplicate
- 12:08 PM ChangeLog edited by
- (diff)
- 12:06 PM Ticket #14919 (Log volume level: local variable 'levels' referenced before assignment) closed by
- duplicate: ChimeraX 0.94!
- 12:05 PM Ticket #14918 (Graphics driver crash) closed by
- can't reproduce
- 11:58 AM Ticket #14913 (AlphaFold: File is not a zip file) closed by
- can't reproduce: Appears that the downloaded results.zip file may have been truncated. …
- 10:45 AM Ticket #14916 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 10:44 AM Ticket #14915 (Crash setting volume level) closed by
- limitation
- 10:26 AM Ticket #14931 (QGLXContext: Failed to create dummy context) created by
- […]
- 9:21 AM Ticket #14930 (Problem reading .dx map: could not convert string to float: b'attribute') created by
- […]
- 7:58 AM Ticket #14929 (Crash in garbage collection) created by
- […]
- 2:37 AM Ticket #14928 (Problem handling SEQCROW job error(?)) created by
- […]
Apr 7, 2024:
- 10:40 PM Ticket #14927 (Graphics driver crash) created by
- […]
- 11:16 AM Ticket #14926 (EMAN2 HDF5 file: cannot import name '_broken_hdf5_long_double' from ...) created by
- […] threed_09.hdf
- 11:10 AM Ticket #14925 (Crash in garbage collection) created by
- […]
- 9:47 AM Ticket #14924 (Crash in python_instances_of_class) created by
- […]
- 9:30 AM Ticket #14923 (Crash in garbage collection) created by
- […]
- 9:24 AM Ticket #14922 (Crash in python_instances_of_class) created by
- […]
- 9:18 AM Ticket #14921 (Crash in python_instances_of_class) created by
- […]
- 7:12 AM Ticket #14920 (Crash in garbage collection) created by
- […]
- 6:54 AM Ticket #14919 (Log volume level: local variable 'levels' referenced before assignment) created by
- […]
- 5:13 AM Ticket #14918 (Graphics driver crash) created by
- […]
- 1:24 AM Ticket #14917 (Angle tool allows decimal places to go to -1) created by
- […]
Apr 6, 2024:
- 4:54 AM Ticket #14916 (KeyError: "No known data format 'mtz'") created by
- […]
- 4:19 AM Ticket #14915 (Crash setting volume level) created by
- […]
Apr 5, 2024:
- 5:42 PM Ticket #14914 (Allow Quest passthrough video for PC VR) created by
- Want to be able to use passthrough video on Quest 3 headsets with …
- 5:35 PM Ticket #14913 (AlphaFold: File is not a zip file) created by
- […]
- 4:17 PM Ticket #10436 (Make VR hand controller button deactivation mode) closed by
- fixed: Done. I added a VR "button lock" button mode. You can assign this …
- 3:36 PM Ticket #14601 (openvr.error_code.CompositorError_TextureUsesUnsupportedFormat) closed by
- can't reproduce: No response from reporter.
- 3:34 PM Ticket #6845 (Adjust VR controller button layout for different controllers) closed by
- wontfix: Meta Quest completely dominates the VR market so I think only their …
- 3:28 PM Ticket #9641 (VR glitches on Nvidia 4070 Ti graphics) closed by
- fixed: We tried disabling Async spacewarp at the NIH BioViz lab during our …
- 3:06 PM Ticket #14912 (SEQCROW failure computing buried volume) created by
- […] double_AlI.log
- 3:01 PM Ticket #14911 (Add H.265 video encoding to the movie encode command) created by
- The movie encode command currently use H.264 video codec by default. …
- 11:56 AM Ticket #14910 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by
- […]
- 10:50 AM Ticket #14909 (xdg-open of html files on RHEL 9 invokes ChimeraX instead of web browser) created by
- Hello, I encountered an annoying behavior of ChimeraX on Rocky Linux …
- 6:06 AM Ticket #14908 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
Apr 4, 2024:
- 7:32 PM Ticket #14907 (Clipper: 'SymmetryManager' object has no attribute 'spacegroup') created by
- […]
- 6:31 PM Ticket #14901 (Problem getting matrix origin while saving map in session) closed by
- fixed: Fixed. Saving a flipped volume in a session was broken by a code …
- 5:25 PM Ticket #14906 (RFE: Start core tools before initializing bundles) closed by
- wontfix: That's a much better idea!
- 4:22 PM Ticket #14879 (Better handling of conflicting defattr registration) closed by
- fixed: Re-registration by defattr now only warns instead of raising an error.
- 4:13 PM Ticket #14906 (RFE: Start core tools before initializing bundles) created by
- By 'core tools' I mean the toolbar, rapid access menu, log, model …
- 3:18 PM Ticket #14905 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by
- […]
- 2:59 PM Ticket #14904 (KeyError: "No known data format 'mtz'") closed by
- can't reproduce: The following daily build had this fixed.
- 2:56 PM Ticket #14902 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce: Already trying UTF-8/16/32; would need file to determine solution
- 2:38 PM Ticket #14900 (Crash in python_instances_of_class) closed by
- duplicate
- 2:34 PM Ticket #14896 (Crash in closest_atom_by_template reading mmCIF) closed by
- can't reproduce: Need test case.
- 2:32 PM Ticket #14898 (Crash deleting hydrogens) closed by
- can't reproduce: Chuck's next ticket (#14899) seems more tractable to work with, so …
- 12:17 PM Ticket #14904 (KeyError: "No known data format 'mtz'") created by
- […]
- 8:59 AM Ticket #14903 (ChimeraX 1.7.1 Alma8/Alma9 menus not working) created by
- […]
- 7:28 AM Ticket #14902 (UnicodeDecodeError reading PDB file) created by
- […]
- 1:14 AM Ticket #14901 (Problem getting matrix origin while saving map in session) created by
- […]
- 12:20 AM Ticket #14900 (Crash in python_instances_of_class) created by
- […]
Apr 3, 2024:
- 11:01 PM Ticket #14899 (Crash deleting hydrogens) created by
- […]
- 10:54 PM Ticket #14898 (Crash deleting hydrogens) created by
- […]
- 5:35 PM Ticket #14872 (swapaa mousemode assigns -1 serial numbers) closed by
- wontfix: Given there seems to be no problem with atom serial numbers = -1 I'm …
- 5:09 PM Ticket #14897 (fitmap search is assuming local model positions are the same as scene ...) created by
- […]
- 5:06 PM Ticket #14863 (fitmap search variable fitting results) closed by
- fixed: Ok, I added a "seed" option to the fitmap command used only if the …
- 3:07 PM Ticket #14896 (Crash in closest_atom_by_template reading mmCIF) created by
- […]
- 2:38 PM Ticket #14895 (Port measure contactArea command from chimera) closed by
- fixed: Done. Same options and behavior as in Chimera except second surface …
- 2:36 PM Ticket #14895 (Port measure contactArea command from chimera) created by
- On Mar 31, 2024, at 7:59 PM, Krishnan Raman wrote: …
- 1:10 PM Ticket #14893 (error evaluating selector) closed by
- can't reproduce: Tried a few things but couldn't reproduce the selector problem. I …
- 12:01 PM Ticket #14892 (Crash in garbage collection) closed by
- duplicate
- 11:58 AM Ticket #14891 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:55 AM Ticket #14890 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:52 AM Ticket #14889 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:49 AM Ticket #14888 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 11:48 AM Ticket #14887 ('Sequence' object has no attribute 'structure') closed by
- can't reproduce
- 11:44 AM Ticket #14886 ('Sequence' object has no attribute 'structure') closed by
- can't reproduce: Going to be entirely different in the daily build now that Chains are …
- 11:29 AM Ticket #14883 (KeyError matching selected regions) closed by
- duplicate
- 11:17 AM Ticket #14881 (Crash in garbage collection) closed by
- duplicate
- 10:52 AM Ticket #14894 (ISOLDE: ResidueStepper holding reference to closed structure) created by
- […]
- 10:35 AM Ticket #14878 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 10:24 AM Ticket #14876 (KeyError: "No known data format 'mtz'") closed by
- duplicate
- 10:17 AM Ticket #14893 (error evaluating selector) created by
- […]
- 9:58 AM Ticket #14892 (Crash in garbage collection) created by
- […]
- 9:01 AM Ticket #14891 (KeyError: "No known data format 'mtz'") created by
- […]
- 6:29 AM Ticket #14890 (KeyError: "No known data format 'mtz'") created by
- […]
- 5:33 AM Ticket #14889 (KeyError: "No known data format 'mtz'") created by
- […]
- 5:22 AM Ticket #14888 (KeyError: "No known data format 'mtz'") created by
- […]
- 5:21 AM Ticket #14887 ('Sequence' object has no attribute 'structure') created by
- […]
- 5:21 AM Ticket #14886 ('Sequence' object has no attribute 'structure') created by
- […]
- 5:20 AM Ticket #14885 (ISOLDE: No compatible OpenCL platform is available) created by
- […]
- 3:59 AM Ticket #14884 (ISOLDE: crash in "isolde sim") created by
- […]
- 2:14 AM Ticket #14883 (KeyError matching selected regions) created by
- […]
- 1:31 AM Ticket #14882 (Bundle ChimeraX-NMRSTAR has no module) created by
- […]
- 12:29 AM Ticket #14881 (Crash in garbage collection) created by
- […]
Apr 2, 2024:
- 9:45 PM Ticket #14880 (defattr Attribute File recipient value molecules or structures) created by
- […]
- 9:19 PM Ticket #14879 (Better handling of conflicting defattr registration) created by
- […]
- 7:33 PM Ticket #14729 (map_series: model is None) closed by
- duplicate: User closed one volume of a series. I believe the ChimeraX volume …
- 7:30 PM Ticket #14773 (ArrayMemoryError copying buffer when restoring map) closed by
- limitation: Out of memory trying to allocate 892 Mbytes for a volume saved in a …
- 7:28 PM Ticket #14784 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Drawing silhouettes, no back buffer. Probable graphics driver bug.
- 7:27 PM Ticket #14805 (Graphics crash, macOS 13.4, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 7:25 PM Ticket #14808 (Crash drawing scene) closed by
- can't reproduce: User opened a map of size 768,256,768 float32, about 500 Mbytes in …
- 7:21 PM Ticket #14811 (Graphics crash, macOS 14.3.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 7:19 PM Ticket #14816 (Framebuffer incomplete) closed by
- can't reproduce: Looks like a graphics driver bug.
- 7:17 PM Ticket #14822 (glClearColor: out of memory) closed by
- can't reproduce
- 6:49 PM Ticket #14878 (KeyError: "No known data format 'mtz'") created by
- […]
- 3:23 PM Ticket #14877 (Medical imaging on toolshed) created by
- Our most recent NIAID contract asks us to explore putting ChimeraX's …
- 2:07 PM Ticket #14876 (KeyError: "No known data format 'mtz'") created by
- […]
- 11:43 AM Ticket #14874 (Have PDB-Redo fetch of mtz automatically fetch and associate pdb-redo ...) created by
- […]
- 11:20 AM 2024-4-4 created by
- 11:19 AM Ticket #14873 (Some kind of crash giving a widget focus) closed by
- can't reproduce
- 11:19 AM DeveloperMeetings edited by
- (diff)
- 11:10 AM Ticket #14871 (Crash in event loop) closed by
- can't reproduce: Possibly the user sent an abort signal to ChimeraX.
- 11:07 AM Ticket #14868 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:57 AM Ticket #14873 (Some kind of crash giving a widget focus) created by
- […]
- 10:47 AM Ticket #14867 (PDB-Redo fetch: open_mmcif() got an unexpected keyword argument ...) closed by
- fixed: Usage no longer reports overSampling or structureFactors as legal …
- 9:26 AM Ticket #14869 (KeyError: "No known data format 'mtz'") closed by
- duplicate: Duplicate of #14862
- 9:20 AM Ticket #14866 (Crash using open dialog) closed by
- can't reproduce
- 9:19 AM Ticket #14865 (KeyError: "No known data format 'mtz'") closed by
- duplicate: Duplicate of #14862
- 9:06 AM Ticket #14872 (swapaa mousemode assigns -1 serial numbers) created by
- […]
- 8:59 AM Ticket #14871 (Crash in event loop) created by
- […]
- 7:25 AM Ticket #14870 (New version check: BlockingIOError: [Errno 35] Resource temporarily ...) created by
- […]
- 6:34 AM Ticket #14869 (KeyError: "No known data format 'mtz'") created by
- […]
- 4:53 AM Ticket #14868 (Graphics crash, macOS 14.2.1, Intel UHD Graphics 617) created by
- […]
- 12:39 AM Ticket #14850 (perframe / clip front problem) closed by
- not a bug: I guess what you mean is that the clip plane is not positioned where …
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