![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 18 months ago
Closed 18 months ago
#15056 closed defect (can't reproduce)
Crash configuring display
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.4.1-x86_64-i386-64bit
ChimeraX Version: 1.8.dev202404062101 (2024-04-06 21:01:47 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff8549f9100 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.surface._surface, chimerax.pdb_lib._load_libs, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imagingmath (total: 48)
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{
"uptime" : 81000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"coalitionID" : 4948,
"osVersion" : {
"train" : "macOS 14.4.1",
"build" : "23E224",
"releaseType" : "User"
},
"captureTime" : "2024-04-28 19:19:18.7349 +0800",
"codeSigningMonitor" : 0,
"incident" : "68126E45-BA00-48FA-9C74-1F86C5EA8112",
"pid" : 88010,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-04-28 17:36:53.1445 +0800",
"procStartAbsTime" : 74964544617318,
"procExitAbsTime" : 81108254117483,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"AF0E444E-37B4-593A-957D-B5CF6828D46F","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "F7A40BD4-636A-5D03-BCEB-C22CD08BD04B",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"wakeTime" : 30868,
"bridgeVersion" : {"build":"21P4222","train":"8.4"},
"sleepWakeUUID" : "A3D7F7D8-6323-41AA-AE52-F1FDCC688347",
"sip" : "enabled",
"vmRegionInfo" : "0 is not in any region. Bytes before following region: 4348555264\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10331b000-10331f000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000000"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":88010},
"vmregioninfo" : "0 is not in any region. Bytes before following region: 4348555264\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 10331b000-10331f000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "0d55d7cc7e1201a304b3671cd1b34d5984140fec",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "5f72dc58705eff005a46b3a9",
"factorPackIds" : {
},
"deploymentId" : 240000015
},
{
"rolloutId" : "60186475825c62000ccf5450",
"factorPackIds" : {
},
"deploymentId" : 240000069
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.8.dev202404062101 (2024-04-06)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/lijuanyin/project/prp43/wt_cu142/j772/job14/c6/job33_focus_unknown/c135/multi/run_it008_half1_body001.mrc
Opened run_it008_half1_body001.mrc as #1, grid size 420,420,420, pixel 1.06,
shown at level 0.0118, step 2, values float32
> volume #1 step 1
> volume #1 level 0.01783
> open
> /Users/lijuanyin/project/prp43/wt_cu142/j772/job14/c6/job33_focus_unknown/c135/multi/run_it008_half1_body002.mrc
Opened run_it008_half1_body002.mrc as #2, grid size 420,420,420, pixel 1.06,
shown at level 0.0144, step 2, values float32
> volume #2 level 0.01004
> open
> /Users/lijuanyin/project/prp43/wt_cu142/j772/job14/c6/job33_focus_unknown/c135/multi/run_it008_half1_body003.mrc
Opened run_it008_half1_body003.mrc as #3, grid size 420,420,420, pixel 1.06,
shown at level 0.00475, step 2, values float32
> volume #3 level 0.01343
> volume #2 level 0.01501
> open
> /Users/lijuanyin/project/prp43/wt_cu142/j772/job14/c6/job33_focus_unknown/c135/multi/run_it008_half1_body004.mrc
Opened run_it008_half1_body004.mrc as #4, grid size 420,420,420, pixel 1.06,
shown at level 0.00348, step 2, values float32
> volume #4 level 0.007599
> open
> /Users/lijuanyin/project/prp43/wt_cu142/j772/job14/c6/job33_focus_unknown/c135/multi/run_it008_half1_body005.mrc
Opened run_it008_half1_body005.mrc as #5, grid size 420,420,420, pixel 1.06,
shown at level 0.00539, step 2, values float32
> volume #5 level 0.009476
> open
> /Users/lijuanyin/project/prp43/wt_cu142/j772/job14/c6/job33_focus_unknown/c135/head.mrc
Opened head.mrc as #6, grid size 420,420,420, pixel 1.06, shown at level
0.0146, step 2, values float32
> open
> /Users/lijuanyin/project/prp43/wt_cu142/j772/job14/c6/job33_focus_unknown/c135/head.mrc
Opened head.mrc as #7, grid size 420,420,420, pixel 1.06, shown at level
0.0146, step 2, values float32
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.8.dev202404062101 (2024-04-06)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lijuanyin/Downloads/8gxs.cif
8gxs.cif title:
PIC-Mediator in complex with +1 nucleosome (T40N) in H-binding state [more
info...]
Chain information for 8gxs.cif #1
---
Chain | Description | UniProt
BA | Transcription initiation factor IIB | TF2B_HUMAN 1-316
DA | Transcription initiation factor TFIID subunit 1 | TAF1_HUMAN 1-1872
DB | Transcription initiation factor TFIID subunit 2 | TAF2_HUMAN 1-1199
DD Dd | Transcription initiation factor TFIID subunit 4 | TAF4_HUMAN 1-1085
DE De | Transcription initiation factor TFIID subunit 5 | TAF5_HUMAN 1-800
DF Df | Transcription initiation factor TFIID subunit 6 | TAF6_HUMAN 1-677
DG | Transcription initiation factor TFIID subunit 7 | TAF7_HUMAN 1-349
DH | Transcription initiation factor TFIID subunit 8 | TAF8_HUMAN 1-310
DI Di | Transcription initiation factor TFIID subunit 9 | TAF9_HUMAN 1-264
DJ Dj | Transcription initiation factor TFIID subunit 10 | TAF10_HUMAN 1-218
DL Dl | Transcription initiation factor TFIID subunit 12 | TAF12_HUMAN 1-161
DO | Transcription initiation factor IIA subunit 2 | T2AG_HUMAN 1-109
DP | TATA-box-binding protein | TBP_HUMAN 1-339
DQ | Transcription initiation factor IIA subunit 1 | TF2AA_HUMAN 1-376
Dc | Transcription initiation factor TFIID subunit 3 | TAF3_HUMAN 1-929
Dk | Transcription initiation factor TFIID subunit 11 | TAF11_HUMAN 1-211
Dm | Transcription initiation factor TFIID subunit 13 | TAF13_HUMAN 1-124
EA | General transcription factor IIE subunit 1 | T2EA_HUMAN 1-439
EB | Transcription initiation factor IIE subunit beta | T2EB_HUMAN 1-291
FA | General transcription factor IIF subunit 1 | T2FA_HUMAN 1-517
FB | General transcription factor IIF subunit 2 | T2FB_HUMAN 1-249
HA | General transcription and DNA repair factor IIH helicase subunit XPD | ERCC2_HUMAN 1-760
HB | General transcription factor IIH subunit 1 | TF2H1_HUMAN 1-548
HC | General transcription factor IIH subunit 4 | TF2H4_HUMAN 1-462
HD | CDK-activating kinase assembly factor MAT1 | MAT1_HUMAN 1-309
HE | General transcription factor IIH subunit 3 | TF2H3_HUMAN 1-308
HF | General transcription factor IIH subunit 5 | TF2H5_HUMAN 1-71
HG | General transcription factor IIH subunit 2 | TF2H2_HUMAN 1-395
HH | General transcription and DNA repair factor IIH helicase subunit XPB | ERCC3_HUMAN 1-782
HI | Cyclin-dependent kinase 7 | CDK7_HUMAN 1-346
HJ | Cyclin-H | CCNH_HUMAN 1-323
NA NE | Histone H3 | A0A310TTQ1_XENLA 400-535 600-735
NB NF | Histone H4 | H4_XENLA 0-102 200-302
NC NG | HISTONE H2A.Z |
ND NH | Histone H2B | A0A8J0U496_XENLA 1197-1322 1397-1522
NX | DNA (162-mer) |
NY | DNA (162-mer) |
PA | DNA-directed RNA polymerase subunit | A0A8D1DPV6_PIG 1-1970
PB | DNA-directed RNA polymerase subunit beta | A0A4X1TVZ5_PIG 1-1174
PC | DNA-directed RNA polymerase II subunit RPB3 | I3LCH3_PIG 1-275
PD | DNA-directed RNA polymerase II subunit RPB4 | A0A481BYI6_PIG 1-142
PE | DNA-directed RNA polymerase II subunit E | A0A4X1VTX4_PIG 1-210
PF | DNA-directed RNA polymerase II subunit F | A0A4X1VEK9_PIG 1-127
PG | DNA-directed RNA polymerase II subunit RPB7 | A0A4X1VKG7_PIG 1-172
PH | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | A0A4X1ULF2_PIG 1-150
PI | DNA-directed RNA polymerase II subunit RPB9 | RPB9_PIG 1-125
PJ | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | A0A493TD97_ANAPP 1-67
PK | RNA_pol_L_2 domain-containing protein | A0A4X1UK25_PIG 1-117
PL | RPB12 | A0A4X1TRS6_PIG 1-58
X | DNA (228-mer) |
Y | DNA (228-mer) |
a | Mediator of RNA polymerase II transcription subunit 1 | MED1_HUMAN 1-1581
b | Mediator of RNA polymerase II transcription subunit 29 | MED29_HUMAN 1-200
c | Mediator of RNA polymerase II transcription subunit 27 | MED27_HUMAN 1-311
d | Mediator of RNA polymerase II transcription subunit 4 | MED4_HUMAN 1-270
e | Mediator of RNA polymerase II transcription subunit 28 | MED28_HUMAN 1-178
f | Mediator of RNA polymerase II transcription subunit 6 | MED6_HUMAN 1-246
g | Mediator of RNA polymerase II transcription subunit 7 | MED7_HUMAN 1-233
h | Isoform 2 of Mediator of RNA polymerase II transcription subunit 8 | MED8_HUMAN 1-268
i | Mediator of RNA polymerase II transcription subunit 9 | MED9_HUMAN 1-146
j | Mediator of RNA polymerase II transcription subunit 10 | MED10_HUMAN 1-135
k | Mediator of RNA polymerase II transcription subunit 11 | MED11_HUMAN 1-117
l | Mediator of RNA polymerase II transcription subunit 30 | MED30_HUMAN 1-178
m | Mediator of RNA polymerase II transcription subunit 31 | MED31_HUMAN 1-131
n | Mediator of RNA polymerase II transcription subunit 14 | MED14_HUMAN 1-1454
o | Mediator of RNA polymerase II transcription subunit 15 | MED15_HUMAN 1-788
p | Isoform 2 of Mediator of RNA polymerase II transcription subunit 16 | MED16_HUMAN 1-841
q | Mediator of RNA polymerase II transcription subunit 17 | MED17_HUMAN 1-651
r | Mediator of RNA polymerase II transcription subunit 18 | MED18_HUMAN 1-208
s | Mediator of RNA polymerase II transcription subunit 19 | MED19_HUMAN 1-244
t | Mediator of RNA polymerase II transcription subunit 20 | MED20_HUMAN 1-212
u | Mediator of RNA polymerase II transcription subunit 21 | MED21_HUMAN 1-144
v | Mediator of RNA polymerase II transcription subunit 22 | MED22_HUMAN 1-200
w | Mediator of RNA polymerase II transcription subunit 23 | MED23_HUMAN 1-1368
x | Mediator of RNA polymerase II transcription subunit 24 | MED24_HUMAN 1-989
y | Mediator of RNA polymerase II transcription subunit 25 | MED25_HUMAN 1-747
z | Mediator of RNA polymerase II transcription subunit 26 | MED26_HUMAN 1-600
Non-standard residues in 8gxs.cif #1
---
MG — magnesium ion
SF4 — iron/sulfur cluster
ZN — zinc ion
OpenGL version: 4.1 ATI-5.5.17
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2,3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 64 GB
System Firmware Version: 2022.100.22.0.0 (iBridge: 21.16.4222.0.0,0)
OS Loader Version: 580~1678
Software:
System Software Overview:
System Version: macOS 14.4.1 (23E224)
Kernel Version: Darwin 23.4.0
Time since boot: 1天9小时24分钟
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-020
Option ROM Version: 113-D32206U1-020
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
C34H89x:
Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
UI Looks like: 3440 x 1440 @ 50.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: H1AK500000
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: Apple USB-C Digital AV Adapter
Adapter Firmware Version: 2,35
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.14.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.1.1
certifi: 2023.11.17
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.16
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.4.3
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.5
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.56.1
ChimeraX-AtomicLibrary: 14.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8.dev202404062101
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.9
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.15
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.4
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.37.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.9
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.1
fonttools: 4.51.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.10.0
html2text: 2024.2.26
idna: 3.6
ihm: 0.43
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.2
jedi: 0.19.1
Jinja2: 3.1.3
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.10
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.1.0
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.3
matplotlib-inline: 0.1.6
msgpack: 1.0.8
ndindex: 1.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.2.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.0
prompt-toolkit: 3.0.43
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.3.0
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3302
pyparsing: 3.1.2
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 25.1.2
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.12.0
setuptools: 69.2.0
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.0
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.1
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4
traitlets: 5.14.1
typing-extensions: 4.11.0
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.10
Change History (2)
comment:1 by , 18 months ago
| Component: | Unassigned → Platform |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash configuring display |
comment:2 by , 18 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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