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Opened 19 months ago
Last modified 19 months ago
#14946 assigned defect
ISOLDE: 'NoneType' object has no attribute 'triggers'
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.4.1-arm64-arm-64bit
ChimeraX Version: 1.8.dev202404092000 (2024-04-09 20:00:21 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.8.dev202404092000 (2024-04-09)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
Unable to load numpy_formathandler accelerator from OpenGL_accelerate
> isolde benchmark maxSize huge
> set selectionWidth 4
Done loading forcefield
> isolde set simFidelityMode Medium/Medium
ISOLDE: setting sim fidelity mode to Medium/Medium
nonbonded_cutoff_distance = 0.900000
use_gbsa = True
gbsa_cutoff = 1.100000
> isolde start
> open 3io0 structureFactors true logInfo false
Summary of feedback from opening 3io0 fetched from pdb
---
warning | WARNING: multiple experimental reflection datasets found:
F_meas_au, F_meas_sigma_au,
pdbx_F_plus, pdbx_F_plus_sigma, pdbx_F_minus, pdbx_F_minus_sigma,
pdbx_anom_difference, pdbx_anom_difference_sigma,
intensity_meas, intensity_sigma,
pdbx_I_plus, pdbx_I_plus_sigma, pdbx_I_minus, pdbx_I_minus_sigma
Automatically choosing "F_meas_au, F_meas_sigma_au".
notes | Resolution: 3.003
Launching live xmap mgr took 1.5379939079284668 seconds.
Opened (LIVE) 2mFo-DFc as #1.1.1.2, grid size 28,26,26, pixel 0.963, shown at
level 0.0948, step 1, values float32
Opened (LIVE) mFo-DFc as #1.1.1.3, grid size 28,26,26, pixel 0.963, shown at
level -0.0565,0.0565, step 1, values float32
Opened (LIVE) 2mFo-DFc_sharp_29 as #1.1.1.4, grid size 28,26,26, pixel 0.963,
shown at level 0.346, step 1, values float32
3io0 title:
Crystal structure of EtuB from Clostridium kluyveri [more info...]
Current benchmark model: 3io0 (small crystal)
=========================
> addh #1.2 metalDist 1
Summary of feedback from adding hydrogens to 3io0 #1.2
---
notes | Termini for 3io0 (#1.2) chain A determined from SEQRES records
Chain-initial residues that are actual N termini:
Chain-initial residues that are not actual N termini: /A PRO 76
Chain-final residues that are actual C termini: /A PHE 304
Chain-final residues that are not actual C termini:
Missing OXT added to C-terminal residue /A PHE 304
198 hydrogen bonds
1692 hydrogens added
> isolde select #1.2
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: Corrected atom nomenclature of 12 residues in model #1.2 to IUPAC-IUB
standards.
Opened (LIVE) MDFF potential as #1.1.1.5, grid size 28,26,26, pixel 0.963,
shown at level 0.305, step 1, values float32
Simulation selection string: #1.2
\-------------------------
> show ~HC
> view #1.2
> isolde sim start #1.2
ISOLDE: started sim
> select clear
Simulated atom count: 3351
Simulation platform: HIP
Time to first coord update: 2.6722 seconds
Minimization time: 0.5184 seconds
> isolde sim stop discardTo start
Sim termination reason: None
reverting to start
Updating bulk solvent parameters...
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: stopped sim
Time per coord update (mean): 0.2172 seconds
Time per coord update (std): 0.0413 seconds
Time per x-ray map recalculation (mean): 0.4119 seconds
Time per x-ray map recalculation (std): 0.1639 seconds
Time per graphics update (mean): 17.3 ms
Time per graphics update (std): 11.1 ms
Time per graphics update (slowest): 478.6 ms
\-------------------------
Simulation selection string: #1.2/A:126
\-------------------------
> show ~HC
> view #1.2/A:126
> isolde sim start #1.2/A:126
ISOLDE: started sim
> select clear
Simulated atom count: 2707
Simulation platform: HIP
Time to first coord update: 1.9937 seconds
Minimization time: 0.2241 seconds
> isolde sim stop discardTo start
Sim termination reason: None
reverting to start
Updating bulk solvent parameters...
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: stopped sim
Time per coord update (mean): 0.2076 seconds
Time per coord update (std): 0.0465 seconds
Time per x-ray map recalculation (mean): 0.4038 seconds
Time per x-ray map recalculation (std): 0.1276 seconds
Time per graphics update (mean): 16.1 ms
Time per graphics update (std): 1.8 ms
Time per graphics update (slowest): 38.4 ms
\-------------------------
> close
Deleting Crystallographic maps(3io0-sf.cif)
Deleting (LIVE) 2mFo-DFc
Deleting (LIVE) mFo-DFc
Deleting (LIVE) 2mFo-DFc_sharp_29
Deleting (LIVE) MDFF potential
> open 7rzq logInfo false
7rzq title:
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex [more info...]
> open 24774 fromDatabase emdb
Summary of feedback from opening 24774 fetched from emdb
---
notes | Fetching compressed map 24774 from ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-24774/map/emd_24774.map.gz
Fetching map header 24774 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-24774/header/emd-24774.xml
Opened emdb 24774 as #2, grid size 256,256,256, pixel 0.816, shown at level
0.05, step 1, values float32, fit PDB 7rzq
> ui tool hide "Volume Viewer"
> clipper associate #2 toModel #1
Opened emdb 24774 as #1.1.1.1, grid size 256,256,256, pixel 0.816, shown at
level 0.352, step 1, values float32
7rzq title:
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex [more info...]
Current benchmark model: 7rzq (small cryo-EM)
=========================
> addh #1.2 metalDist 1
Summary of feedback from adding hydrogens to 7rzq #1.2
---
notes | Termini for 7rzq (#1.2) chain A determined from SEQRES records
Termini for 7rzq (#1.2) chain B determined from SEQRES records
Termini for 7rzq (#1.2) chain C determined from SEQRES records
Termini for 7rzq (#1.2) chain D determined from SEQRES records
Termini for 7rzq (#1.2) chain E determined from SEQRES records
1 messages similar to the above omitted
Chain-initial residues that are actual N termini:
Chain-initial residues that are not actual N termini: /A GLU 918, /B GLU 918,
/C GLU 918, /D LEU 1166, /E VAL 1164, /F VAL 1164
Chain-final residues that are actual C termini: /A GLU 988, /B GLU 988, /C GLU
988
Chain-final residues that are not actual C termini: /D LEU 1200, /E LEU 1200,
/F LEU 1200
Missing OXT added to C-terminal residue /A GLU 988
Missing OXT added to C-terminal residue /B GLU 988
Missing OXT added to C-terminal residue /C GLU 988
370 hydrogen bonds
Adding 'H' to /A GLU 918
Adding 'H' to /B GLU 918
Adding 'H' to /C GLU 918
Adding 'H' to /D LEU 1166
Adding 'H' to /E VAL 1164
1 messages similar to the above omitted
/D LEU 1200 is not terminus, removing H atom from 'C'
/E LEU 1200 is not terminus, removing H atom from 'C'
/F LEU 1200 is not terminus, removing H atom from 'C'
2489 hydrogens added
> isolde select #1.2
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: Corrected atom nomenclature of 9 residues in model #1.2 to IUPAC-IUB
standards.
Simulation selection string: #1.2
\-------------------------
> show ~HC
> view #1.2
> isolde sim start #1.2
ISOLDE: started sim
> select clear
Simulated atom count: 4913
Simulation platform: HIP
Time to first coord update: 2.5216 seconds
Minimization time: 0.4991 seconds
> isolde sim stop discardTo start
Sim termination reason: None
reverting to start
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: stopped sim
Time per coord update (mean): 0.2045 seconds
Time per coord update (std): 0.0144 seconds
Time per graphics update (mean): 16.7 ms
Time per graphics update (std): 11.4 ms
Time per graphics update (slowest): 499.1 ms
\-------------------------
Simulation selection string: #1.2/C:959
\-------------------------
> show ~HC
> view #1.2/C:959
> isolde sim start #1.2/C:959
ISOLDE: started sim
> select clear
Simulated atom count: 1946
Simulation platform: HIP
Time to first coord update: 1.9358 seconds
Minimization time: 0.3853 seconds
> isolde sim stop discardTo start
Sim termination reason: None
reverting to start
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: stopped sim
Time per coord update (mean): 0.1626 seconds
Time per coord update (std): 0.0224 seconds
Time per graphics update (mean): 16.0 ms
Time per graphics update (std): 0.7 ms
Time per graphics update (slowest): 20.6 ms
\-------------------------
> close
> open 6nak structureFactors true logInfo false
Summary of feedback from opening 6nak fetched from pdb
---
warning | WARNING: multiple experimental reflection datasets found:
F_meas_au, F_meas_sigma_au,
phase_calc, fom
Automatically choosing "F_meas_au, F_meas_sigma_au".
notes | Resolution: 3.1410925635747495
Launching live xmap mgr took 1.5196411609649658 seconds.
Opened (LIVE) 2mFo-DFc as #1.1.1.2, grid size 26,24,26, pixel 1,1.02,0.986,
shown at level 0.123, step 1, values float32
Opened (LIVE) mFo-DFc as #1.1.1.3, grid size 26,24,26, pixel 1,1.02,0.986,
shown at level -0.0745,0.0745, step 1, values float32
Opened (LIVE) 2mFo-DFc_sharp_34 as #1.1.1.4, grid size 26,24,26, pixel
1,1.02,0.986, shown at level 0.425, step 1, values float32
Opened (STATIC) F_calc_au, phase_calc as #1.1.1.5, grid size 26,24,26, pixel
1,1.02,0.986, shown at level -0.678,0.678, step 1, values float32
Opened (STATIC) pdbx_DELFWT, pdbx_DELPHWT as #1.1.1.6, grid size 26,24,26,
pixel 1,1.02,0.986, shown at level -0.121,0.121, step 1, values float32
Opened (STATIC) pdbx_FWT, pdbx_PHWT as #1.1.1.7, grid size 26,24,26, pixel
1,1.02,0.986, shown at level -0.38,0.38, step 1, values float32
6nak title:
BACTERIAL PROTEIN COMPLEX TM BDE complex [more info...]
ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
chains...
ISOLDE: Corrected atom nomenclature of 92 residues in model #1.2 to IUPAC-IUB
standards.
Opened (LIVE) MDFF potential as #1.1.1.8, grid size 26,24,26, pixel
1,1.02,0.986, shown at level 0.378, step 1, values float32
Current benchmark model: 6nak (medium crystal)
=========================
> addh #1.2 metalDist 1
Summary of feedback from adding hydrogens to 6nak #1.2
---
warning | Not adding hydrogens to /G LYS 38 CB because it is missing heavy-atom bond partners
notes | Termini for 6nak (#1.2) chain A determined from SEQRES records
Termini for 6nak (#1.2) chain B determined from SEQRES records
Termini for 6nak (#1.2) chain D determined from SEQRES records
Termini for 6nak (#1.2) chain C determined from SEQRES records
Termini for 6nak (#1.2) chain G determined from SEQRES records
1 messages similar to the above omitted
Chain-initial residues that are actual N termini: /A MET 1, /B MET 1, /C MET
1, /G MET 1
Chain-initial residues that are not actual N termini: /D GLU -3, /G GLU 45, /E
LYS 0
Chain-final residues that are actual C termini: /B VAL 327, /D THR 161, /C GLY
206, /G VAL 327
Chain-final residues that are not actual C termini: /A LYS 203, /G LYS 38, /E
ASN 160
Missing OXT added to C-terminal residue /D THR 161
1149 hydrogen bonds
Adding 'H' to /D GLU -3
Adding 'H' to /G GLU 45
Adding 'H' to /E LYS 0
/A LYS 203 is not terminus, removing H atom from 'C'
/E ASN 160 is not terminus, removing H atom from 'C'
11201 hydrogens added
> isolde select #1.2
Simulation selection string: #1.2
\-------------------------
> show ~HC
> view #1.2
> isolde sim start #1.2
Loading residue template for APC from internal database
Loading residue template for TXA from internal database
Sim termination reason: None
Updating bulk solvent parameters...
ISOLDE: stopped sim
> select clear
Traceback (most recent call last):
File
"/Users/eugenepichkur/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/eugenepichkur/Library/Application
Support/ChimeraX/1.8/lib/python/site-
packages/chimerax/isolde/delayed_reaction.py", line 20, in callback
self.cb(*self.cb_args)
File "/Users/eugenepichkur/Library/Application
Support/ChimeraX/1.8/lib/python/site-packages/chimerax/isolde/benchmark.py",
line 150, in start_benchmark
sh.triggers.add_handler('coord update', self._coord_update_cb)
^^^^^^^^^^^
AttributeError: 'NoneType' object has no attribute 'triggers'
Error processing trigger "new frame":
AttributeError: 'NoneType' object has no attribute 'triggers'
File "/Users/eugenepichkur/Library/Application
Support/ChimeraX/1.8/lib/python/site-packages/chimerax/isolde/benchmark.py",
line 150, in start_benchmark
sh.triggers.add_handler('coord update', self._coord_update_cb)
^^^^^^^^^^^
See log for complete Python traceback.
Failed to send bug report. Bug report server www.rbvi.ucsf.edu is unavailable
OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: MKGP3LL/A
Chip: Apple M1 Pro
Total Number of Cores: 8 (6 performance and 2 efficiency)
Memory: 16 GB
System Firmware Version: 10151.101.3
OS Loader Version: 10151.101.3
Software:
System Software Overview:
System Version: macOS 14.4.1 (23E224)
Kernel Version: Darwin 23.4.0
Time since boot: 14 hours, 40 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 14
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
aiobotocore: 2.12.2
aiohttp: 3.9.3
aioitertools: 0.11.0
aiosignal: 1.3.1
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asciitree: 0.3.3
asttokens: 2.4.1
attrs: 23.2.0
Babel: 2.14.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
botocore: 1.34.51
build: 1.2.1
certifi: 2023.11.17
cffi: 1.16.0
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.16
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.4.3
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.5
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.56.1
ChimeraX-AtomicLibrary: 14.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.23.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8.dev202404092000
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.8.dev0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.9
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.15
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OME-Zarr: 0.5.3
ChimeraX-OpenCommand: 1.13.4
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.37.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
click: 8.1.7
cloudpickle: 3.0.0
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cryptography: 42.0.5
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
dask: 2024.4.1
debugpy: 1.8.1
decorator: 5.1.1
distributed: 2024.4.1
docutils: 0.20.1
executing: 2.0.1
fasteners: 0.19
filelock: 3.13.3
fonttools: 4.51.0
frozenlist: 1.4.1
fsspec: 2024.3.1
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.10.0
html2text: 2024.2.26
idna: 3.6
ihm: 0.43
imagecodecs: 2024.1.1
imageio: 2.34.0
imagesize: 1.4.1
importlib-metadata: 7.1.0
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.2
jedi: 0.19.1
Jinja2: 3.1.3
jmespath: 1.0.1
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.10
kiwisolver: 1.4.5
lazy-loader: 0.4
line-profiler: 4.1.2
locket: 1.0.0
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.6
msgpack: 1.0.8
multidict: 6.0.5
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.0.1
nptyping: 2.5.0
numcodecs: 0.12.1
numexpr: 2.10.0
numpy: 1.26.4
ome-zarr: 0.8.3
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
partd: 1.4.1
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.0
prompt-toolkit: 3.0.43
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pycparser: 2.22
pydicom: 2.3.0
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3302
pyparsing: 3.1.2
pyproject-hooks: 1.0.0
PyQt6: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
pyspnego: 0.10.2
python-dateutil: 2.9.0.post0
pytz: 2024.1
PyYAML: 6.0.1
pyzmq: 25.1.2
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
s3fs: 2024.3.1
scikit-image: 0.22.0
scipy: 1.13.0
setuptools: 69.2.0
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
smbprotocol: 1.13.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.0
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tblib: 3.0.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
toolz: 0.12.1
tornado: 6.4
traitlets: 5.14.2
typing-extensions: 4.11.0
tzdata: 2024.1
urllib3: 2.0.7
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.10
wrapt: 1.16.0
yarl: 1.9.4
zarr: 2.17.2
zict: 3.0.0
zipp: 3.18.1
Change History (1)
comment:1 by , 19 months ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ISOLDE: 'NoneType' object has no attribute 'triggers' |
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