Opened 18 months ago

Closed 18 months ago

#15037 closed defect (duplicate)

Garbage collection crash

Reported by: yakonfire@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-14.4.1-arm64-arm-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Thread 0x00000003befff000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x00000003bdff3000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000031aaf3000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000319ae7000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000318adb000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 930 in wait
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000317acf000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000316ac3000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000315ab7000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000314aab000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000313a9f000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000312a93000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000311a87000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x0000000310a7b000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000030fa6f000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Thread 0x000000030ea63000 (most recent call first):
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 975 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap

Current thread 0x00000001ff60fac0 (most recent call first):
  Garbage-collecting
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in 
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 161 in __iter__
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/hbonds/hbond.py", line 774 in _find_acceptors
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/hbonds/hbond.py", line 498 in find_hbonds
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/hbonds/cmd.py", line 94 in cmd_hbonds
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3468 in __call__
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2929 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/scripting.py", line 184 in _run_commands
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/runscript.py", line 61 in run_command_script
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/runscript.py", line 51 in runscript
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 319 in execute
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/cmd_line/tool.py", line 146 in keyPressEvent
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
  File "/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, chimerax.surface._surface, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, PIL._imagingmath, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp, chimerax.mlp._mlp (total: 57)


{"app_name":"ChimeraX","timestamp":"2024-04-25 22:22:35.00 -0600","app_version":"1.7.1","slice_uuid":"17982d98-65bc-3327-8526-577ec996453c","build_version":"1.7.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 14.4.1 (23E224)","roots_installed":0,"name":"ChimeraX","incident_id":"3B28B4B6-DAAB-4DF6-8E08-45FFA58D4153"}
{
  "uptime" : 680000,
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro18,2",
  "coalitionID" : 86980,
  "osVersion" : {
    "train" : "macOS 14.4.1",
    "build" : "23E224",
    "releaseType" : "User"
  },
  "captureTime" : "2024-04-25 22:22:32.6319 -0600",
  "codeSigningMonitor" : 1,
  "incident" : "3B28B4B6-DAAB-4DF6-8E08-45FFA58D4153",
  "pid" : 96935,
  "translated" : false,
  "cpuType" : "ARM-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2024-04-25 22:04:26.3938 -0600",
  "procStartAbsTime" : 16459745176593,
  "procExitAbsTime" : 16485814103929,
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.7.1","CFBundleVersion":"1.7.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"54EDB63B-59DA-5473-BF40-1A458E1F4283","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "3FE89ED7-3137-4E81-0724-502C8964939F",
  "codeSigningID" : "edu.ucsf.cgl.ChimeraX",
  "codeSigningTeamID" : "LWV8X224YF",
  "codeSigningFlags" : 570491649,
  "codeSigningValidationCategory" : 6,
  "codeSigningTrustLevel" : 4294967295,
  "instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRW+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkVDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
  "wakeTime" : 5515,
  "sleepWakeUUID" : "2DB6F9B8-3317-49B5-AAA9-411FC2E04D3B",
  "sip" : "enabled",
  "vmRegionInfo" : "0xa9 is not in any region.  Bytes before following region: 4333797207\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      __TEXT                      102508000-10250c000    [   16K] r-x\/r-x SM=COW  \/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
  "exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
  "termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":96935},
  "vmregioninfo" : "0xa9 is not in any region.  Bytes before following region: 4333797207\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      __TEXT                      102508000-10250c000    [   16K] r-x\/r-x SM=COW  \/Applications\/ChimeraX-1.7.1.app\/Contents\/MacOS\/ChimeraX",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
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    "uuid" : "031f3e8c-5227-3138-a444-68174c1c28cf",
    "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    "name" : "libsystem_platform.dylib"
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  {
    "source" : "P",
    "arch" : "arm64e",
    "base" : 6897524736,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.AppKit",
    "size" : 20172800,
    "uuid" : "8b85317d-d56a-3370-8b78-da6c1d0fb53c",
    "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
    "name" : "AppKit",
    "CFBundleVersion" : "2487.50.124"
  },
  {
    "source" : "P",
    "arch" : "arm64e",
    "base" : 7014219776,
    "CFBundleShortVersionString" : "2.1.1",
    "CFBundleIdentifier" : "com.apple.HIToolbox",
    "size" : 2899968,
    "uuid" : "c315e2a3-3fd1-3a2b-b205-b8b492b0f506",
    "path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
    "name" : "HIToolbox"
  },
  {
    "source" : "P",
    "arch" : "arm64e",
    "base" : 6834044928,
    "size" : 559580,
    "uuid" : "f6dd3ec2-85a4-3ab1-8486-b189cd980ebe",
    "path" : "\/usr\/lib\/dyld",
    "name" : "dyld"
  },
  {
    "size" : 0,
    "source" : "A",
    "base" : 0,
    "uuid" : "00000000-0000-0000-0000-000000000000"
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  {
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    "arch" : "arm64e",
    "base" : 6838173696,
    "CFBundleShortVersionString" : "6.9",
    "CFBundleIdentifier" : "com.apple.CoreFoundation",
    "size" : 5083136,
    "uuid" : "33908a83-098f-3437-973e-fb848c4f39df",
    "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
    "name" : "CoreFoundation",
    "CFBundleVersion" : "2420"
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],
  "sharedCache" : {
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  "size" : 4189880320,
  "uuid" : "a53b7d2f-a773-3524-8828-248b33ef0b4e"
},
  "vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=5.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.3G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               128K        1 \nActivity Tracing                   256K        1 \nCG image                           160K        9 \nColorSync                          624K       29 \nCoreAnimation                     3264K      124 \nCoreGraphics                        32K        2 \nCoreUI image data                 3952K       28 \nFoundation                          16K        1 \nKernel Alloc Once                   32K        1 \nMALLOC                             4.4G      190 \nMALLOC guard page                  384K       24 \nMach message                        64K        3 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        656K       41 \nStack                            389.5M       42 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      564.5M      380 \n__AUTH                            2787K      414 \n__AUTH_CONST                      32.7M      632 \n__CTF                               824        1 \n__DATA                            25.4M      776 \n__DATA_CONST                      42.5M      789 \n__DATA_DIRTY                      1878K      229 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__LINKEDIT                       555.3M      152 \n__OBJC_RO                         71.7M        1 \n__OBJC_RW                         2195K        1 \n__TEXT                           961.5M      806 \ndyld private memory                464K        4 \nmapped file                      211.0M       51 \nshared memory                     3760K       61 \n===========                     =======  ======= \nTOTAL                              7.3G     4800 \n",
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},
  "logWritingSignature" : "ca100c34a56764d7856ee9dcb1431caef0850939",
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}
}
===== Log before crash start =====
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
You can double click a model's Name or ID in the model panel to edit those
fields  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> runscript /Users/neyrinck/Dropbox/notebook/proteins/makepictures.cxc

> alias picmovie view orient ; save "/Users/neyrinck/Google Drive/My
> Drive/$1/$2/$2_$3.jpg" supersample 2 ; movie record ; turn y 2 180 ; wait
> 180 ; movie encode "/Users/neyrinck/Google Drive/My
> Drive/$1/$2/$2_$3_rot.mp4"

> alias makepicture close ; set bgColor white ; windowsize 480 480 ;open
> "/Users/neyrinck/Google Drive/My Drive/$1/$2/best_model.pdb" ; alphafold pae
> #1 file "/Users/neyrinck/Google Drive/My Drive/$1/$2/best_model_pae.json" ;
> view orient ; sequence chain #1/A ; sequence chain #1/B ;color bychain ;
> color /A indianred ; color /B royalblue ; alphafold contacts /A to /B
> palette paegreen ; hbonds /A reveal true restrict /B color fuchsia radius
> 0.8 dashes 2 ; picmovie $1 $2 contacts_hbonds ; style sphere ; show atoms ;
> picmovie $1 $2 sphere ; style nucleic stick ; hide atoms ; coulombic key
> true ; picmovie $1 $2 coulombic ; style nucleic stick ; hide atoms ; mlp key
> true ; picmovie $1 $2 hydrophobic

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA186

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
14 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA186/AA186_contacts_hbonds_rot.mp4  
  
Changed 8236 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA186/AA186_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -24.91, mean
-3.45, maximum 18.96  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.91, mean
0.27, maximum 17.12  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA186/AA186_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -28.9, mean
-5.402, maximum 27.2  
Map values for surface "best_model.pdb_B SES surface": minimum -33.89, mean
-6.165, maximum 25.75  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA186/AA186_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA186/AA186_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA187

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
3 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA187/AA187_contacts_hbonds_rot.mp4  
  
Changed 6019 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA187/AA187_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.03, mean
-3.67, maximum 22.15  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -10.55, mean
-0.38, maximum 8.98  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA187/AA187_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -32.26, mean
-5.262, maximum 25.53  
Map values for surface "best_model.pdb_B SES surface": minimum -25.71, mean
-5.142, maximum 22.48  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA187/AA187_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA187/AA187_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA188

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA188/AA188_contacts_hbonds_rot.mp4  
  
Changed 8614 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA188/AA188_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -38.16, mean
-2.92, maximum 19.47  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.05, mean
-2.44, maximum 10.15  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA188/AA188_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -27.49, mean
-5.448, maximum 26.09  
Map values for surface "best_model.pdb_B SES surface": minimum -27.72, mean
-3.147, maximum 24.08  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA188/AA188_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA188/AA188_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA190

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA190/AA190_contacts_hbonds_rot.mp4  
  
Changed 6317 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA190/AA190_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -24.42, mean
-3.27, maximum 19.24  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -23.57, mean
-1.27, maximum 12.65  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA190/AA190_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -27.13, mean
-5.362, maximum 22.73  
Map values for surface "best_model.pdb_B SES surface": minimum -28.29, mean
-1.995, maximum 24.45  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA190/AA190_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA190/AA190_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA191

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
11 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA191/AA191_contacts_hbonds_rot.mp4  
  
Changed 11455 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA191/AA191_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.01, mean
-2.83, maximum 22.37  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -21.18, mean
0.52, maximum 18.94  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA191/AA191_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -31.38, mean
-5.34, maximum 25.04  
Map values for surface "best_model.pdb_B SES surface": minimum -29.11, mean
-3.532, maximum 23.69  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA191/AA191_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA191/AA191_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA192

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
9 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA192/AA192_contacts_hbonds_rot.mp4  
  
Changed 11820 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA192/AA192_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.61, mean
-3.59, maximum 19.85  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.51, mean
1.62, maximum 20.76  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA192/AA192_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -32.99, mean
-5.396, maximum 30.04  
Map values for surface "best_model.pdb_B SES surface": minimum -28.44, mean
-3.959, maximum 25.98  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA192/AA192_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA192/AA192_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA193

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
3 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA193/AA193_contacts_hbonds_rot.mp4  
  
Changed 9596 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA193/AA193_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.11, mean
-2.56, maximum 23.64  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -42.39, mean
-0.10, maximum 15.73  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA193/AA193_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -31.34, mean
-5.428, maximum 25.19  
Map values for surface "best_model.pdb_B SES surface": minimum -28.64, mean
-3.417, maximum 23.47  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA193/AA193_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA193/AA193_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA194

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA194/AA194_contacts_hbonds_rot.mp4  
  
Changed 12503 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA194/AA194_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -26.89, mean
-3.00, maximum 20.61  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.00, mean
-0.51, maximum 14.86  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA194/AA194_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -30.98, mean
-5.388, maximum 27.15  
Map values for surface "best_model.pdb_B SES surface": minimum -30.38, mean
-3.552, maximum 26.1  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA194/AA194_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA194/AA194_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA195

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA195/AA195_contacts_hbonds_rot.mp4  
  
Changed 8027 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA195/AA195_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -25.35, mean
-2.87, maximum 20.00  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -28.84, mean
-1.33, maximum 13.32  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA195/AA195_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -28.08, mean
-5.331, maximum 24.7  
Map values for surface "best_model.pdb_B SES surface": minimum -28.54, mean
-3.605, maximum 24  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA195/AA195_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA195/AA195_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AA196

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA196/AA196_contacts_hbonds_rot.mp4  
  
Changed 7633 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA196/AA196_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.14, mean
-2.91, maximum 19.43  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -15.07, mean
0.08, maximum 18.08  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA196/AA196_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -26.61, mean
-5.327, maximum 25.49  
Map values for surface "best_model.pdb_B SES surface": minimum -28.14, mean
-2.916, maximum 25.28  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AA196/AA196_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AA196/AA196_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB186

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB186/AB186_contacts_hbonds_rot.mp4  
  
Changed 5381 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB186/AB186_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -17.98, mean
-2.28, maximum 8.81  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -16.07, mean
0.21, maximum 18.05  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB186/AB186_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -27.84, mean
-5.09, maximum 22.1  
Map values for surface "best_model.pdb_B SES surface": minimum -27.72, mean
-6.068, maximum 24.02  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB186/AB186_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB186/AB186_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB187

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
4 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB187/AB187_contacts_hbonds_rot.mp4  
  
Changed 3164 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB187/AB187_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -13.97, mean
-2.03, maximum 8.91  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -10.35, mean
-0.34, maximum 9.68  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB187/AB187_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -30.24, mean
-5.187, maximum 22.01  
Map values for surface "best_model.pdb_B SES surface": minimum -26.55, mean
-5.109, maximum 22.84  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB187/AB187_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB187/AB187_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB188

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
6 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB188/AB188_contacts_hbonds_rot.mp4  
  
Changed 5759 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB188/AB188_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.45, mean
-2.40, maximum 14.15  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.89, mean
-2.42, maximum 10.40  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB188/AB188_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -29.08, mean
-5.29, maximum 22.01  
Map values for surface "best_model.pdb_B SES surface": minimum -28.34, mean
-3.106, maximum 24.37  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB188/AB188_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB188/AB188_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB189

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB189/AB189_contacts_hbonds_rot.mp4  
  
Changed 11436 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB189/AB189_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -14.10, mean
-2.72, maximum 8.68  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -21.48, mean
-1.56, maximum 18.03  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB189/AB189_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -30.74, mean
-5.483, maximum 28.27  
Map values for surface "best_model.pdb_B SES surface": minimum -32.48, mean
-4.342, maximum 25.92  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB189/AB189_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB189/AB189_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB190

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB190/AB190_contacts_hbonds_rot.mp4  
  
Changed 3462 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB190/AB190_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.94, mean
-2.18, maximum 8.91  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.18, mean
-1.26, maximum 11.78  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB190/AB190_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -28.63, mean
-5.26, maximum 21.99  
Map values for surface "best_model.pdb_B SES surface": minimum -27.65, mean
-2.096, maximum 23.33  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB190/AB190_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB190/AB190_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB191

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
19 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB191/AB191_contacts_hbonds_rot.mp4  
  
Changed 8600 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB191/AB191_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -13.38, mean
-2.52, maximum 8.68  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.16, mean
0.52, maximum 30.73  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB191/AB191_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -33.01, mean
-5.304, maximum 22.18  
Map values for surface "best_model.pdb_B SES surface": minimum -27.39, mean
-3.607, maximum 23.95  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB191/AB191_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB191/AB191_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB192

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
20 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB192/AB192_contacts_hbonds_rot.mp4  
  
Changed 8965 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB192/AB192_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.36, mean
-2.55, maximum 9.46  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -14.78, mean
1.71, maximum 21.57  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB192/AB192_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -30.94, mean
-5.128, maximum 21.8  
Map values for surface "best_model.pdb_B SES surface": minimum -28.25, mean
-3.985, maximum 23.29  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB192/AB192_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB192/AB192_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB193

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
0 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB193/AB193_contacts_hbonds_rot.mp4  
  
Changed 6741 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB193/AB193_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -15.84, mean
-2.71, maximum 8.52  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -19.48, mean
-0.11, maximum 16.95  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB193/AB193_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -28.16, mean
-5.376, maximum 22.41  
Map values for surface "best_model.pdb_B SES surface": minimum -29.6, mean
-3.358, maximum 23.25  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB193/AB193_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB193/AB193_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB194

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
3 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB194/AB194_contacts_hbonds_rot.mp4  
  
Changed 9648 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB194/AB194_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.59, mean
-2.26, maximum 9.57  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.39, mean
-0.52, maximum 19.31  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB194/AB194_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -29.37, mean
-5.314, maximum 21.7  
Map values for surface "best_model.pdb_B SES surface": minimum -29.24, mean
-3.512, maximum 27.19  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB194/AB194_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB194/AB194_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB195

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB195/AB195_contacts_hbonds_rot.mp4  
  
Changed 5172 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB195/AB195_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -19.68, mean
-2.20, maximum 10.20  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.10, mean
-1.41, maximum 14.50  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB195/AB195_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -29.78, mean
-5.286, maximum 22.61  
Map values for surface "best_model.pdb_B SES surface": minimum -28.28, mean
-3.822, maximum 28.02  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB195/AB195_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB195/AB195_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AB196

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB196/AB196_contacts_hbonds_rot.mp4  
  
Changed 4778 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB196/AB196_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.20, mean
-2.16, maximum 8.74  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -20.34, mean
0.05, maximum 18.28  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB196/AB196_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -28.03, mean
-5.173, maximum 22.61  
Map values for surface "best_model.pdb_B SES surface": minimum -28.77, mean
-3.276, maximum 25.05  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AB196/AB196_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AB196/AB196_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC186

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
12 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC186/AC186_contacts_hbonds_rot.mp4  
  
Changed 5379 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC186/AC186_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -20.95, mean
-2.23, maximum 8.85  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -16.29, mean
0.39, maximum 19.36  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC186/AC186_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -26.67, mean
-5.891, maximum 22.7  
Map values for surface "best_model.pdb_B SES surface": minimum -29.73, mean
-6.058, maximum 27.56  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC186/AC186_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC186/AC186_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC187

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
12 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC187/AC187_contacts_hbonds_rot.mp4  
  
Changed 3162 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC187/AC187_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.68, mean
-2.33, maximum 9.06  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -9.90, mean
-0.27, maximum 9.33  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC187/AC187_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -27.47, mean
-5.712, maximum 22.14  
Map values for surface "best_model.pdb_B SES surface": minimum -25.75, mean
-5.149, maximum 23.24  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC187/AC187_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC187/AC187_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC188

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
5 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC188/AC188_contacts_hbonds_rot.mp4  
  
Changed 5757 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC188/AC188_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.05, mean
-2.48, maximum 8.40  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -20.14, mean
-2.43, maximum 9.82  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC188/AC188_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -25.87, mean
-5.828, maximum 22.33  
Map values for surface "best_model.pdb_B SES surface": minimum -30.43, mean
-3.125, maximum 24.01  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC188/AC188_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC188/AC188_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC189

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
20 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC189/AC189_contacts_hbonds_rot.mp4  
  
Changed 11434 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC189/AC189_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -22.26, mean
-2.19, maximum 8.17  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -21.40, mean
-1.62, maximum 14.33  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC189/AC189_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -27.26, mean
-5.898, maximum 21.64  
Map values for surface "best_model.pdb_B SES surface": minimum -28.57, mean
-4.458, maximum 25.71  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC189/AC189_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC189/AC189_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC190

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
9 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC190/AC190_contacts_hbonds_rot.mp4  
  
Changed 3460 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC190/AC190_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.03, mean
-2.51, maximum 8.22  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -20.61, mean
-1.35, maximum 11.56  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC190/AC190_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -25.92, mean
-5.851, maximum 22.86  
Map values for surface "best_model.pdb_B SES surface": minimum -26.44, mean
-1.954, maximum 26.51  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC190/AC190_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC190/AC190_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC191

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
9 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC191/AC191_contacts_hbonds_rot.mp4  
  
Changed 8598 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC191/AC191_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -20.65, mean
-2.21, maximum 8.17  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -25.51, mean
0.54, maximum 21.36  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC191/AC191_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -26.98, mean
-5.848, maximum 22.07  
Map values for surface "best_model.pdb_B SES surface": minimum -32.59, mean
-3.607, maximum 23.52  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC191/AC191_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC191/AC191_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC192

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
12 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC192/AC192_contacts_hbonds_rot.mp4  
  
Changed 8963 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC192/AC192_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -20.63, mean
-2.10, maximum 9.34  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.60, mean
1.78, maximum 20.18  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC192/AC192_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -27.25, mean
-5.889, maximum 22.52  
Map values for surface "best_model.pdb_B SES surface": minimum -30.3, mean
-3.986, maximum 25.88  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC192/AC192_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC192/AC192_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC193

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
20 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC193/AC193_contacts_hbonds_rot.mp4  
  
Changed 6739 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC193/AC193_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.42, mean
-2.48, maximum 8.30  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.55, mean
0.06, maximum 16.72  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC193/AC193_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -25.99, mean
-5.905, maximum 22.5  
Map values for surface "best_model.pdb_B SES surface": minimum -28.97, mean
-3.339, maximum 24.02  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC193/AC193_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC193/AC193_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC194

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
12 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC194/AC194_contacts_hbonds_rot.mp4  
  
Changed 9646 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC194/AC194_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -23.51, mean
-2.36, maximum 8.77  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -17.11, mean
-0.51, maximum 16.98  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC194/AC194_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -25.86, mean
-5.792, maximum 22.33  
Map values for surface "best_model.pdb_B SES surface": minimum -29, mean
-3.581, maximum 26.04  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC194/AC194_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC194/AC194_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC195

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
14 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC195/AC195_contacts_hbonds_rot.mp4  
  
Changed 5170 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC195/AC195_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -21.50, mean
-2.40, maximum 8.43  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.83, mean
-1.37, maximum 15.82  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC195/AC195_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -29.83, mean
-5.767, maximum 22.83  
Map values for surface "best_model.pdb_B SES surface": minimum -27.39, mean
-3.788, maximum 26.02  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC195/AC195_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC195/AC195_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AC196

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
13 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC196/AC196_contacts_hbonds_rot.mp4  
  
Changed 4776 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC196/AC196_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -25.07, mean
-2.42, maximum 9.05  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -13.57, mean
0.11, maximum 15.96  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC196/AC196_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -26.96, mean
-5.708, maximum 22.69  
Map values for surface "best_model.pdb_B SES surface": minimum -29.1, mean
-3.118, maximum 25.12  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AC196/AC196_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AC196/AC196_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD186

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
0 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD186/AD186_contacts_hbonds_rot.mp4  
  
Changed 4085 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD186/AD186_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.21, mean
-0.43, maximum 9.71  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -18.45, mean
0.29, maximum 18.54  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD186/AD186_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -24.22, mean
-3.747, maximum 22.91  
Map values for surface "best_model.pdb_B SES surface": minimum -28.97, mean
-6.16, maximum 22.4  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD186/AD186_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD186/AD186_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD187

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
0 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD187/AD187_contacts_hbonds_rot.mp4  
  
Changed 1868 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD187/AD187_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.30, mean
-0.39, maximum 9.55  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -11.67, mean
-0.32, maximum 9.61  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD187/AD187_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -24.3, mean
-3.661, maximum 21.99  
Map values for surface "best_model.pdb_B SES surface": minimum -24.61, mean
-5.134, maximum 25.6  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD187/AD187_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD187/AD187_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD188

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/AD188_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD188/AD188_contacts_hbonds_rot.mp4  
  
Changed 4463 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/AD188_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD188/AD188_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -11.84, mean
-0.34, maximum 9.45  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -23.60, mean
-2.35, maximum 11.28  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/AD188_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD188/AD188_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -24.63, mean
-3.775, maximum 23.45  
Map values for surface "best_model.pdb_B SES surface": minimum -28.75, mean
-3.079, maximum 30.2  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD188/AD188_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD188/AD188_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD189

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD189/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
2 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD189/AD189_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD189/AD189_contacts_hbonds_rot.mp4  
  
Changed 10140 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD189/AD189_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD189/AD189_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -11.95, mean
-0.37, maximum 9.89  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -26.51, mean
-1.61, maximum 17.42  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD189/AD189_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD189/AD189_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -24.43, mean
-3.562, maximum 22.17  
Map values for surface "best_model.pdb_B SES surface": minimum -28.69, mean
-4.304, maximum 26.15  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD189/AD189_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD189/AD189_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD190

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD190/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
2 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD190/AD190_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD190/AD190_contacts_hbonds_rot.mp4  
  
Changed 2166 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD190/AD190_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD190/AD190_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -11.83, mean
-0.42, maximum 9.66  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -21.95, mean
-1.39, maximum 14.79  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD190/AD190_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD190/AD190_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -25.59, mean
-3.755, maximum 22.3  
Map values for surface "best_model.pdb_B SES surface": minimum -26.92, mean
-2.172, maximum 24.22  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD190/AD190_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD190/AD190_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD191

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD191/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  
1 hydrogen bonds found  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD191/AD191_contacts_hbonds.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD191/AD191_contacts_hbonds_rot.mp4  
  
Changed 7304 atom styles  

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD191/AD191_sphere.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD191/AD191_sphere_rot.mp4  
  
Changed 0 atom styles  
Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_A SES surface #1.3: minimum, -12.83, mean
-0.37, maximum 9.56  
Coulombic values for best_model.pdb_B SES surface #1.4: minimum, -20.23, mean
0.44, maximum 19.03  

> key red-white-blue :-10 :0 :10 showTool true

> ui mousemode right "color key"

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD191/AD191_coulombic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD191/AD191_coulombic_rot.mp4  
  
Changed 0 atom styles  
Map values for surface "best_model.pdb_A SES surface": minimum -25.05, mean
-3.812, maximum 22.08  
Map values for surface "best_model.pdb_B SES surface": minimum -30.24, mean
-3.567, maximum 26.89  

> key lipophilicity :-20 :0 :20 showTool true

> save "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD191/AD191_hydrophobic.jpg"
> supersample 2

Movie saved to /Users/neyrinck/.../AD191/AD191_hydrophobic_rot.mp4  
  

> makepicture 0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults AD192

> ui mousemode right translate

> open "/Users/neyrinck/Google Drive/My
> Drive/0_DUF1220_202208_howard/0_AlphaFold_results/0_MarksResults/AD192/best_model.pdb"

Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Alignment identifier is 1/A  
Alignment identifier is 1/B  


===== Log before crash end =====

Log:
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,2
      Model Number: Z14W00106LL/A
      Chip: Apple M1 Max
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 32 GB
      System Firmware Version: 10151.101.3
      OS Loader Version: 10151.101.3

Software:

    System Software Overview:

      System Version: macOS 14.4.1 (23E224)
      Kernel Version: Darwin 23.4.0
      Time since boot: 24 days, 11 hours, 22 minutes

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 24
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.4.1
    Babel: 2.14.0
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.3
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.13
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.4.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.49.1
    ChimeraX-AtomicLibrary: 12.1.5
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.5
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.3.2
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.5
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.8
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6.1
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.14
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.1
    ChimeraX-NRRD: 1.1
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.1
    ChimeraX-PDB: 2.7.3
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.2
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.4
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.33.3
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.3.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.3
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.1
    contourpy: 1.2.0
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 0.29.33
    debugpy: 1.8.0
    decorator: 5.1.1
    docutils: 0.19
    executing: 2.0.1
    filelock: 3.9.0
    fonttools: 4.47.2
    funcparserlib: 2.0.0a0
    glfw: 2.6.4
    grako: 3.16.5
    h5py: 3.10.0
    html2text: 2020.1.16
    idna: 3.6
    ihm: 0.38
    imagecodecs: 2023.9.18
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.1.1
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.7.1
    jupyterlab-widgets: 3.0.9
    kiwisolver: 1.4.5
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.4
    matplotlib: 3.7.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.6.0
    netCDF4: 1.6.2
    networkx: 3.1
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.8
    numpy: 1.25.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 10.2.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 4.1.0
    prompt-toolkit: 3.0.43
    psutil: 5.9.5
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.16.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.2801
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2023.3.post1
    pyzmq: 25.1.2
    qtconsole: 5.4.3
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.11.1
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.5.0
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2023.7.18
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.4
    traitlets: 5.9.0
    typing-extensions: 4.9.0
    tzdata: 2023.4
    urllib3: 2.1.0
    wcwidth: 0.2.13
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.9

Change History (2)

comment:1 by Tom Goddard, 18 months ago

Component: Unassigned → Core
Owner: set to Eric Pettersen
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Garbage collection crash

This crash in ChimeraX 1.7.1 has been fixed in the ChimeraX daily builds.

comment:2 by Tom Goddard, 18 months ago

Resolution: → duplicate
Status: assigned → closed
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